CF835811

Overview
NameCF835811
Unique NameCF835811
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length371
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835811 vs. ExPASy Swiss-Prot
Match: IF5A5_SOLTU (Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum GN=EIF5A5 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.140e-19
Identity = 46/61 (75.41%), Postives = 51/61 (83.61%), Query Frame = -1
Query:  189 DGFVSFWVENGNPKGDLRLPSDETLLAQVKDGFDEGKDLVLTVMFSMGGGQICALKDIGPK 371
            DGFVS   ENGN K DLRLP+D+TLLAQVKDGF EGKDLVL+VM +MG  QIC +KDIGPK
Sbjct:   99 DGFVSLLTENGNTKDDLRLPTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159          
BLAST of CF835811 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLLC (Eukaryotic translation initiation factor 5A-1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.140e-19
Identity = 46/61 (75.41%), Postives = 51/61 (83.61%), Query Frame = -1
Query:  189 DGFVSFWVENGNPKGDLRLPSDETLLAQVKDGFDEGKDLVLTVMFSMGGGQICALKDIGPK 371
            DGFVS   ENGN K DLRLP+D+TLLAQVKDGF EGKDLVL+VM +MG  QIC +KDIGPK
Sbjct:   99 DGFVSLLTENGNTKDDLRLPTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159          
BLAST of CF835811 vs. ExPASy Swiss-Prot
Match: IF5A2_NICPL (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.392e-19
Identity = 44/61 (72.13%), Postives = 50/61 (81.97%), Query Frame = -1
Query:  189 DGFVSFWVENGNPKGDLRLPSDETLLAQVKDGFDEGKDLVLTVMFSMGGGQICALKDIGPK 371
            DGFVS   ENGN K DLRLP+D+ LL Q+KDGF EGKDLV++VM +MG  QICALKDIGPK
Sbjct:   99 DGFVSLLTENGNTKDDLRLPTDDNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159          
BLAST of CF835811 vs. ExPASy Swiss-Prot
Match: IF5A_SENVE (Eukaryotic translation initiation factor 5A OS=Senecio vernalis GN=EIFSV1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.261e-18
Identity = 43/61 (70.49%), Postives = 50/61 (81.97%), Query Frame = -1
Query:  189 DGFVSFWVENGNPKGDLRLPSDETLLAQVKDGFDEGKDLVLTVMFSMGGGQICALKDIGPK 371
            DGFVS   ENGN K DL+LP+D+ LL Q+KDGF EGKDLV++VM +MG  QICALKDIGPK
Sbjct:   99 DGFVSLLTENGNTKDDLKLPTDDALLTQIKDGFGEGKDLVVSVMSAMGEEQICALKDIGPK 159          
BLAST of CF835811 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLLC (Eukaryotic translation initiation factor 5A-4 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.668e-18
Identity = 44/62 (70.97%), Postives = 51/62 (82.26%), Query Frame = -1
Query:  186 DGFVSFWVENGNPKGDLRLPSDETLLAQVKDGFDEGKDLVLTVMFSMGGGQICALKDIGPKS 371
            DGFVS   ENGN K DLRLP+D+TLL QVK GF+EGKDLVL+VM +MG  QICA+KDIG K+
Sbjct:   99 DGFVSLLTENGNTKDDLRLPTDDTLLNQVKGGFEEGKDLVLSVMSAMGEEQICAVKDIGTKT 160          
BLAST of CF835811 vs. ExPASy Swiss-Prot
Match: IF5A1_TOBAC (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.791e-18
Identity = 42/61 (68.85%), Postives = 49/61 (80.33%), Query Frame = -1
Query:  189 DGFVSFWVENGNPKGDLRLPSDETLLAQVKDGFDEGKDLVLTVMFSMGGGQICALKDIGPK 371
            DGFVS   ENGN K DLRLP+D+ LLA +KDGF EGKDLVL+VM +MG  QIC +KD+GPK
Sbjct:   99 DGFVSLLTENGNTKDDLRLPTDDNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159          
BLAST of CF835811 vs. ExPASy Swiss-Prot
Match: IF5A1_NICPL (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia GN=EIF-5A1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.791e-18
Identity = 42/61 (68.85%), Postives = 49/61 (80.33%), Query Frame = -1
Query:  189 DGFVSFWVENGNPKGDLRLPSDETLLAQVKDGFDEGKDLVLTVMFSMGGGQICALKDIGPK 371
            DGFVS   ENGN K DLRLP+D+ LLA +KDGF EGKDLVL+VM +MG  QIC +KD+GPK
Sbjct:   99 DGFVSLLTENGNTKDDLRLPTDDNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159          
BLAST of CF835811 vs. ExPASy Swiss-Prot
Match: IF5A_MANES (Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 6.257e-18
Identity = 42/62 (67.74%), Postives = 51/62 (82.26%), Query Frame = -1
Query:  186 DGFVSFWVENGNPKGDLRLPSDETLLAQVKDGFDEGKDLVLTVMFSMGGGQICALKDIGPKS 371
            DGFVS   E GN K DLRLP+DE LL+Q+KDGF EGKDLV++VM +MG  +IC+LKDIGPK+
Sbjct:   99 DGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVSVMSAMGEERICSLKDIGPKN 160          
BLAST of CF835811 vs. ExPASy Swiss-Prot
Match: IF5A_MAIZE (Eukaryotic translation initiation factor 5A OS=Zea mays GN=TIF5A PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 6.257e-18
Identity = 41/61 (67.21%), Postives = 50/61 (81.97%), Query Frame = -1
Query:  189 DGFVSFWVENGNPKGDLRLPSDETLLAQVKDGFDEGKDLVLTVMFSMGGGQICALKDIGPK 371
            DGFVS    +GN K DLRLP+DETL+AQ+K+GF+ GKDLV+TV  +MG  QICALKD+GPK
Sbjct:  100 DGFVSLLTSDGNTKDDLRLPTDETLVAQIKEGFESGKDLVVTVQSAMGEEQICALKDVGPK 160          
BLAST of CF835811 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLTU (Eukaryotic translation initiation factor 5A-1/2 OS=Solanum tuberosum GN=EIF5A1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.257e-18
Identity = 44/62 (70.97%), Postives = 50/62 (80.65%), Query Frame = -1
Query:  186 DGFVSFWVENGNPKGDLRLPSDETLLAQVKDGFDEGKDLVLTVMFSMGGGQICALKDIGPKS 371
            DGFVS   ENGN K DLRLP+D+ LL QVK GF+EGKDLVL+VM +MG  QICA+KDIG KS
Sbjct:   99 DGFVSLLTENGNTKDDLRLPTDDALLNQVKGGFEEGKDLVLSVMSAMGEEQICAVKDIGTKS 160          
The following BLAST results are available for this feature:
BLAST of CF835811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
IF5A5_SOLTU1.140e-1975.41Eukaryotic translation initiation factor 5A-5 OS=S... [more]
IF5A1_SOLLC1.140e-1975.41Eukaryotic translation initiation factor 5A-1 OS=S... [more]
IF5A2_NICPL7.392e-1972.13Eukaryotic translation initiation factor 5A-2 OS=N... [more]
IF5A_SENVE1.261e-1870.49Eukaryotic translation initiation factor 5A OS=Sen... [more]
IF5A4_SOLLC3.668e-1870.97Eukaryotic translation initiation factor 5A-4 OS=S... [more]
IF5A1_TOBAC4.791e-1868.85Eukaryotic translation initiation factor 5A-1 OS=N... [more]
IF5A1_NICPL4.791e-1868.85Eukaryotic translation initiation factor 5A-1 OS=N... [more]
IF5A_MANES6.257e-1867.74Eukaryotic translation initiation factor 5A OS=Man... [more]
IF5A_MAIZE6.257e-1867.21Eukaryotic translation initiation factor 5A OS=Zea... [more]
IF5A1_SOLTU6.257e-1870.97Eukaryotic translation initiation factor 5A-1/2 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01O21_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01O21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835811 ID=CF835811; Name=CF835811; organism=Citrus sinensis; type=EST; length=371bp
AAAAAATTGAACACCCCCCTATTTTCCGCCCCCAATCAAAAAAACTACCT
TTTCCAGGCAGCTTGCAATTCTCACCACAAAACAAAGACCCCACAAATAT
TAAAGGCAAACTCTAAATGATTAAAAAATTTTTCCAAAAAACAGATGCAA
CCAAACACTGCAAATAATCACATATTGCCCAACTACGACTTTGGGCCAAT
ATCCTTGAGGGCACAAATCTGCCCCCCACCCATTGAAAACATGACAGTCA
AAACCAAGTCCTTCCCCTCATCAAAACCGTCCTTGACCTGGGCCAGCAAA
GTCTCATCGGATGGGAGCCTCAAATCACCCTTGGGGTTCCCATTTTCAAC
CCAAAAACTCACAAATCCATC
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