CF835843

Overview
NameCF835843
Unique NameCF835843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1156 contig Csv1_Contig1156:389..1102. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835843 vs. ExPASy Swiss-Prot
Match: Y4466_ARATH (ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana GN=At4g24660 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.295e-18
Identity = 40/69 (57.97%), Postives = 53/69 (76.81%), Query Frame = -1 
Query:  433 NSSDNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRK 639
            +SS    KR RTKFT EQKEKML+FAERLGW++ + ++   + FC+E GV R+V K+WMHNNKN+ G+K
Sbjct:  151 SSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSLGKK 219
[Close]
BLAST of CF835843 vs. ExPASy Swiss-Prot
Match: Y5541_ARATH (ZF-HD homeobox protein At5g65410 OS=Arabidopsis thaliana GN=At5g65410 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.084e-16
Identity = 36/70 (51.43%), Postives = 52/70 (74.29%), Query Frame = -1 
Query:  436 AANSSDNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGR 645
            +A +    +KR RTKFT EQKE+ML+ AER+GW++ R ++++ Q FC E GV R+V KVW+HNNK+  G+
Sbjct:  183 SAEAGGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHTLGK 252
The following BLAST results are available for this feature:
BLAST of CF835843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y4466_ARATH3.295e-1857.97ZF-HD homeobox protein At4g24660 OS=Arabidopsis th... [more]
Y5541_ARATH3.084e-1651.43ZF-HD homeobox protein At5g65410 OS=Arabidopsis th... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01P22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01P22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835843 ID=CF835843; Name=CF835843; organism=Citrus sinensis; type=EST; length=714bp
TTTTTTTTTATCGATAATCTTTCATTAAGAGCGGCCACCATTAAGAGAAT
TAAAAACACACATGGGATAAACACTTGCAAGAAGAAAGCGAGACAAAACC
CTAAATCTAATGTAGAAGATGAAGGATATAATTAAGACTAATTAGCATAT
AATTAAGTTAAAATTGACAATGATAATTGCGATATCATCTATTCTCTTCT
TCACCCACATCAAAATCAAGAAAGGAAAAAAGGTAAAACATCTTCCATTT
CCAGTCAAAGCTAGCAACTTGTTCATTAATTTAATTTACTCTTCACATTT
AGGAGCCACAGCAACACTACCGTTTCCATTTCCGTCATTGTGGTTTTTGC
AGTTGCCATTGACGTCAAAACTAACCCTGCTGCAACCATTGACAATGTCA
TTAATGTTCTTGTTATTGATACTCCTCTGATCTTTTCTCCCGGAAGCGTT
CTTGTTGTTATGCATCCAGACTTTGAACACGCGTCTGCTAACACCAACTT
CACTGCAGAAATCTTGGGTCAATTTCTCTTCAGCTCTGTTCATCTTCCAG
CCTAGCCTTTCGGCAAAAGATAACATTTTTTCTTTCTGCTCTTGTGTAAA
CTTTGTTCTTGATCTCTTCTTTCCATTATCTGATGAATTTGCAGCAAGCA
CTTGATTGAAGGGAGGCTGGTGCTGGGGATAATGATGATGACGAGGATGA
TTATCATCACCATC
back to top