CF835859

Overview
NameCF835859
Unique NameCF835859
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835859 vs. ExPASy Swiss-Prot
Match: RNLE_SOLLC (Extracellular ribonuclease LE OS=Solanum lycopersicum PE=1 SV=2)

HSP 1 Score: 363.229 bits (931), Expect = 9.539e-100
Identity = 167/231 (72.29%), Postives = 193/231 (83.55%), Query Frame = 3
Query:   30 MESKRQFSIILIKLFFIQYLSVLCAARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPTAPFDQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCSESVL-NQHQYFQTALNLKNQINLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSASNFINCPVFPNGKKCGSQIEFPPF 719
            M S   FS+ LI L   Q LSVL AA++FDFFYFV QWPGSYCDT +SCCYPTTGKPAADFGIHGLWPN NDG+YPSNCDP +P+DQSQISDL SSMQ+NWPTLACPSG+G TFWSHEWEKHGTC+ESVL NQH YF+ AL+LKNQI+LL  L+ A I PDG SY L +I++AIK A G++PWI+CNVD+SGNSQLYQ+Y+CVD S S+ I CP+FP G KCG+ IEFP F
Sbjct:    1 MASNSAFSLFLILLIITQCLSVLNAAKDFDFFYFVQQWPGSYCDTKQSCCYPTTGKPAADFGIHGLWPNNNDGTYPSNCDPNSPYDQSQISDLISSMQQNWPTLACPSGSGSTFWSHEWEKHGTCAESVLTNQHAYFKKALDLKNQIDLLSILQGADIHPDGESYDLVNIRNAIKSAIGYTPWIQCNVDQSGNSQLYQVYICVDGSGSSLIECPIFPGG-KCGTSIEFPTF 230          
BLAST of CF835859 vs. ExPASy Swiss-Prot
Match: RNS1_ARATH (Ribonuclease 1 OS=Arabidopsis thaliana GN=RNS1 PE=1 SV=1)

HSP 1 Score: 347.436 bits (890), Expect = 5.416e-95
Identity = 158/225 (70.22%), Postives = 182/225 (80.89%), Query Frame = 3
Query:   51 SIILIKLFFI--QYLSVLCAARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPTAPFDQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQINLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSASNFINCPVFPNGKKCGSQIEFPPF 719
            S+ LI L  I     S   ++ +FDFFYFV QWPGSYCDT K CCYP +GKPAADFGIHGLWPNY DG+YPSNCD + PFD S ISDL +SM+K+WPTLACPSG+G  FW HEWEKHGTCSESV++QH+YFQTALNLK + NLL AL  AGI PDG SYSLESI+D+IKE+ GF+PW+ECN D SGNSQLYQ+YLCVD S S  I CPVFP+G KCG++IEFP F
Sbjct:    7 SLCLISLLVILPSVFSASSSSEDFDFFYFVQQWPGSYCDTQKKCCYPNSGKPAADFGIHGLWPNYKDGTYPSNCDASKPFDSSTISDLLTSMKKSWPTLACPSGSGEAFWEHEWEKHGTCSESVIDQHEYFQTALNLKQKTNLLGALTKAGINPDGKSYSLESIRDSIKESIGFTPWVECNRDGSGNSQLYQVYLCVDRSGSGLIECPVFPHG-KCGAEIEFPSF 230          
BLAST of CF835859 vs. ExPASy Swiss-Prot
Match: RNLX_SOLLC (Intracellular ribonuclease LX OS=Solanum lycopersicum GN=RNALX PE=1 SV=2)

HSP 1 Score: 317.005 bits (811), Expect = 7.839e-86
Identity = 146/233 (62.66%), Postives = 181/233 (77.68%), Query Frame = 3
Query:   27 IMESKRQFSIILIKLFFIQYLSVLCA-ARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPTAPFDQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQINLLQALRTAGIVP-DGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSASNFINCPVFPNGKKCGSQIEFPPF 719
            +M+S+++   +LIK+  +Q L VLC  +++FDFFYFV QWP SYCDT +SCCYPTTGKP  DF IHGLWPNY DG +P NCD  +  D+S+ SDL S+M+KNWP+LACPS +G+ FWSHEW KHGTC  S LNQH YFQTAL+ K + NLLQ L  AGI P +G  Y +ESIK AI++  G +P+IECNVD  GN QLYQ+YLCVD+SAS FI+CP+FP+G KCGS+IEFP F
Sbjct:    1 MMKSQKK---LLIKIIVVQCLLVLCVTSQDFDFFYFVQQWPASYCDTRRSCCYPTTGKPDEDFSIHGLWPNYKDGKWPQNCDRESSLDESEFSDLISTMEKNWPSLACPSSDGLKFWSHEWLKHGTC--SALNQHAYFQTALDFKTKSNLLQNLNNAGIKPRNGDYYGVESIKKAIEKGVGHTPFIECNVDSQGNHQLYQVYLCVDSSASKFIDCPIFPHGGKCGSKIEFPSF 228          
BLAST of CF835859 vs. ExPASy Swiss-Prot
Match: RNS3_ARATH (Ribonuclease 3 OS=Arabidopsis thaliana GN=RNS3 PE=2 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 8.112e-83
Identity = 135/219 (61.64%), Postives = 167/219 (76.26%), Query Frame = 3
Query:   63 IKLFFIQYLSVLCAARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPTAPFDQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQINLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSASNFINCPVFPNGKKCGSQIEFPPF 719
            I +  +Q L V   A++FDFFYFVLQWPG+YCD+  SCCYP TGKPAADFGIHGLWPNY  G +P NC+P + FD  ++SDL S +Q+ WPTL+CPS +G+ FW+HEWEKHGTC+ES L+QH YF+  L LK + NLL AL  AGI PD   Y ++ I++ IK+  GF+P IECN D S NSQLYQIYLCVDTSAS FINCPV P+G +C S+++FP F
Sbjct:    5 IFILALQQLYVQSFAQDFDFFYFVLQWPGAYCDSRHSCCYPQTGKPAADFGIHGLWPNYKTGGWPQNCNPDSRFDDLRVSDLMSDLQREWPTLSCPSNDGMKFWTHEWEKHGTCAESELDQHDYFEAGLKLKQKANLLHALTNAGIKPDDKFYEMKDIENTIKQVVGFAPGIECNKDSSHNSQLYQIYLCVDTSASKFINCPVMPHG-RCDSRVQFPKF 222          
BLAST of CF835859 vs. ExPASy Swiss-Prot
Match: RNS2_ARATH (Ribonuclease 2 OS=Arabidopsis thaliana GN=RNS2 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.452e-31
Identity = 80/217 (36.87%), Postives = 110/217 (50.69%), Query Frame = 3
Query:  108 RNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAAD----FGIHGLWPNYNDGSYPSNCDPTAPFDQSQISDLRSSMQKNWPTLACPS-----GNGITFWSHEWEKHGTCSESVL-NQHQYFQTALNLKNQINLLQALRTAGIVPDGS-SYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCV--DTSASNFINCPVFPNGKKCGSQIEFPPF 719
            R FD+F   LQWPG+YC   + CC        +D    F IHGLWP+YNDGS+PS C   + F + +IS L   ++K WP+L+C S     G   +FW HEWEKHGTCS  V  +++ YF T LNL  + N+   L  AG V   S  Y L  I  AI+ A   +P + C  D      + +I +C   D    + +      + K C   +  P +
Sbjct:   30 REFDYFALSLQWPGTYCRGTRHCCSKNACCRGSDAPTQFTIHGLWPDYNDGSWPS-CCYRSDFKEKEISTLMDGLEKYWPSLSCGSPSSCNGGKGSFWGHEWEKHGTCSSPVFHDEYNYFLTTLNLYLKHNVTDVLYQAGYVASNSEKYPLGGIVTAIQNAFHITPEVVCKRD-----AIDEIRICFYKDFKPRDCVGSQDLTSRKSCPKYVSLPEY 240          
BLAST of CF835859 vs. ExPASy Swiss-Prot
Match: RNMC_MOMCH (Ribonuclease MC OS=Momordica charantia PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.896e-31
Identity = 73/185 (39.46%), Postives = 102/185 (55.14%), Query Frame = 3
Query:  114 FDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPTAPFDQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQINLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVD-ESGNSQLYQIYLCVDTSASNFINC 665
            FD F+FV QWP + C   KS   P +G     F IHGLWP    G+  +NC   +PFD ++IS L+S +   WP +     N   FWSHEW KHGTCSES  NQ  YF+ A++++N  +++ ALR     P+G + S ++IK  +K   G  P + C  D ++  S L Q+  C     S  I+C
Sbjct:    1 FDSFWFVQQWPPAVCSFQKSGSCPGSG--LRTFTIHGLWPQ-GSGTSLTNCPQGSPFDITKISHLQSQLNTLWPNVL--RANNQQFWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDIIGALRPHAAGPNGRTKSRQAIKGFLKAKFGKFPGLRCRTDPQTKVSYLVQVVACFAQDGSTLIDC 180          
BLAST of CF835859 vs. ExPASy Swiss-Prot
Match: RNDI_DICDI (Ribonuclease DdI OS=Dictyostelium discoideum GN=ddiA PE=1 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 4.671e-30
Identity = 74/204 (36.27%), Postives = 113/204 (55.39%), Query Frame = 3
Query:  111 NFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPTAPFDQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCSES--VLNQHQYFQTALNLKNQINLLQALRTAGIVP-DGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSASNFINCPVFPNGKKCGSQIEFP 713
            +FDF+ FV QW  SYCD+ ++C      K    F IHGLWP  +DGSYPS C   + F+ + I DL   +  +WP+L  P+ +   FW+HE+ KHGTCS +  + + H YF T + L  + N+  AL +  I P D ++Y    I +AI    G  P I+C+     + QL  + +C+D ++ + ++CP    G  C   ++FP
Sbjct:   31 DFDFYLFVQQWIYSYCDS-QTCIQ---NKEREAFTIHGLWPENSDGSYPSFCSGPS-FNVNAIQDLEDQLNFDWPSLTGPNTD---FWTHEFSKHGTCSITGPITDIHDYFATGIKLYTEFNITAALESENIYPSDSNTYKPVDITNAITTHFGGKPGIQCS-----SGQLSTVAVCIDKNSLSIMDCPDL-QGWSCSGSVKFP 220          
BLAST of CF835859 vs. ExPASy Swiss-Prot
Match: RN28_PANGI (Ribonuclease-like storage protein OS=Panax ginseng PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 2.170e-27
Identity = 69/206 (33.50%), Postives = 106/206 (51.46%), Query Frame = 3
Query:   51 SIILIKLFFIQYLSVLCAARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPTAPFDQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQINLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSASNFINCP 668
            S+I++ L    +     +   +  F   LQWP  +C+   +C    T      F IHGL+P    G+    CD TA FD + +SD  + M   WP+    + + I FW HEW+KHG CSE++L Q  YF+TAL  +   +++  L   GI P+   Y  + IK+AIK+     P I+   +E+    L  I +CV+  A+ F++CP
Sbjct:    8 SVIIVSLSIFSWGGNARSDYPWAMFALRLQWPAGFCEVNNAC---DTKSLLNTFTIHGLYPYNAKGTPALYCDGTA-FDVNSVSDFLAEMHLAWPSHETNTED-IQFWEHEWKKHGRCSEALLKQTDYFRTALAFRKAFDIVGLLNQEGIYPNNDLYRPKMIKEAIKKHLNAVPEIDFTKNENSEYVLTDINVCVNQQATRFVDCP 208          
BLAST of CF835859 vs. ExPASy Swiss-Prot
Match: RNS7_NICAL (Ribonuclease S-7 OS=Nicotiana alata PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.717e-25
Identity = 74/224 (33.04%), Postives = 108/224 (48.21%), Query Frame = 3
Query:   57 ILIKLFFIQYLSVLCAARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPTAPFDQSQISDLRSSMQKNWPTLACPSG---NGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQINLLQALRTAGIVPD-GSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSASNFINCPVFPNGKKCGS-QIEFP 713
            +L  L F+  LS +  A  F++   VLQWP ++C T      P       +F IHGLWP+ N  +  + C     F   +    +  + K WP L            FW HE+ KHG C     N+ QYF  A+ LK++ +LL +LR  GI+P  G  Y+++ I   IK+ +   P + C     G  +L +I +C D+   N INCP     K  GS +I+FP
Sbjct:    9 VLFVLLFV--LSPIYGA--FEYMQLVLQWPTAFCHTTPCKRIPN------NFTIHGLWPD-NVSTTLNYCAAKENFKNIEDDTKKDDLYKRWPDLTTAETYCKQHQNFWRHEYNKHGKCCSESYNREQYFDLAMALKDKFDLLSSLRNHGIIPGRGMKYTVQKINSTIKKITQGYPNLSCT---KGIMELVEIGICFDSMVKNVINCPHPKTCKPTGSNEIKFP 218          
BLAST of CF835859 vs. ExPASy Swiss-Prot
Match: RNOY_CRAGI (Ribonuclease Oy OS=Crassostrea gigas PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.008e-24
Identity = 66/193 (34.20%), Postives = 102/193 (52.85%), Query Frame = 3
Query:  108 RNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSY-PSNCDPTAPFDQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCSESV---LNQHQYFQTALNLKNQINLLQALRTAGIVPDGSS-YSLESIKDAIKEASGFSPWIECNVDESGNSQ--LYQIYLCVDTSASNFINC 665
            +++++F F  QWP + C   KSC  P +      +GIHGLWP+ +  S  P NC+ + PFD + +  L   ++K WP L  P     +FW HEW KHGTC+ S+    N+ +YF   L L  + N+ + L   GI+P  ++ Y +   + A+K   G    IEC  D+    +  LY+I +C+ T     I+C
Sbjct:    1 KDWNYFTFAQQWPIAVCAEHKSCFIPDS---VVGWGIHGLWPSSDTESKGPENCNGSWPFDINNVMPLVPELKKYWPNLY-PDTKANSFWEHEWSKHGTCATSLPATSNELKYFGMGLKLHAKYNISRILVNQGILPSKTAGYMINETEAAVKRELGVDAVIECVYDKEKTKKQLLYEISICL-TKEFELISC 188          
The following BLAST results are available for this feature:
BLAST of CF835859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RNLE_SOLLC9.539e-10072.29Extracellular ribonuclease LE OS=Solanum lycopersi... [more]
RNS1_ARATH5.416e-9570.22Ribonuclease 1 OS=Arabidopsis thaliana GN=RNS1 PE=... [more]
RNLX_SOLLC7.839e-8662.66Intracellular ribonuclease LX OS=Solanum lycopersi... [more]
RNS3_ARATH8.112e-8361.64Ribonuclease 3 OS=Arabidopsis thaliana GN=RNS3 PE=... [more]
RNS2_ARATH1.452e-3136.87Ribonuclease 2 OS=Arabidopsis thaliana GN=RNS2 PE=... [more]
RNMC_MOMCH1.896e-3139.46Ribonuclease MC OS=Momordica charantia PE=1 SV=1[more]
RNDI_DICDI4.671e-3036.27Ribonuclease DdI OS=Dictyostelium discoideum GN=dd... [more]
RN28_PANGI2.170e-2733.50Ribonuclease-like storage protein OS=Panax ginseng... [more]
RNS7_NICAL7.717e-2533.04Ribonuclease S-7 OS=Nicotiana alata PE=1 SV=1[more]
RNOY_CRAGI1.008e-2434.20Ribonuclease Oy OS=Crassostrea gigas PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835859 ID=CF835859; Name=CF835859; organism=Citrus sinensis; type=EST; length=813bp
TTGATTTTACTCTTTGCACTTTGAGAATTATGGAGTCCAAGCGCCAGTTT
TCAATAATCTTGATCAAACTTTTCTTCATTCAGTATCTATCAGTTCTTTG
TGCTGCCCGGAACTTCGATTTCTTCTACTTTGTCCTGCAGTGGCCAGGAT
CATACTGTGATACAGCGAAGAGTTGCTGCTATCCAACGACTGGAAAGCCA
GCAGCAGATTTCGGGATTCATGGACTCTGGCCTAATTACAACGATGGCTC
CTATCCATCCAACTGTGACCCCACTGCCCCTTTCGATCAATCCCAGATAT
CAGACCTGCGAAGCAGCATGCAAAAGAACTGGCCAACACTGGCTTGCCCA
AGCGGGAATGGCATAACATTTTGGTCCCATGAATGGGAGAAACACGGCAC
TTGCTCTGAGTCTGTGCTTAACCAACATCAGTACTTTCAAACAGCTCTTA
ACCTGAAAAATCAAATCAATCTCCTCCAAGCTCTCAGAACCGCAGGAATA
GTGCCTGACGGGAGTTCGTACAGCTTGGAAAGCATCAAGGATGCGATAAA
AGAAGCAAGTGGGTTCAGTCCATGGATAGAATGCAATGTTGATGAATCAG
GCAACAGCCAGCTTTATCAGATTTACTTGTGTGTCGACACTTCTGCCTCT
AATTTCATCAACTGCCCCGTCTTTCCCAACGGCAAAAAATGTGGATCCCA
GATTGAGTTTCCTCCGTTTTAGTGATCAAGGGATCAATCATCAACGTGTG
TGATTAATTTCTTCATCATGCTAAGCTGATTCTATTTCAGTCGTTTTTAT
TCTTGATCAATCT
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