CF835871

Overview
NameCF835871
Unique NameCF835871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13509 contig Csv1_Contig13509:10..568. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THIC2_ARATH (Probable acetyl-CoA acetyltransferase, cytosolic 2 OS=Arabidopsis thaliana GN=At5g47720 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.227e-42
Identity = 85/115 (73.91%), Postives = 95/115 (82.61%), Query Frame = 3
Query:   54 YADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXXASALVVELV 398
            YADAAQAPE+FTT PALAIPKAI  AGL+ASQVD YEINEAF+VVALANQKLLGL+P+++N HGGAV+LGHPLGCSGARILVTLLGVLR K  KY           ASALV+E +
Sbjct:  291 YADAAQAPELFTTTPALAIPKAIKRAGLDASQVDYYEINEAFSVVALANQKLLGLDPERLNAHGGAVSLGHPLGCSGARILVTLLGVLRAKKGKYGVASICNGGGGASALVLEFM 405          

HSP 2 Score: 25.7942 bits (55), Expect = 3.227e-42
Identity = 12/16 (75.00%), Postives = 13/16 (81.25%), Query Frame = 2
Query:    5 EKAFKLGLQVIAKITG 52
            EKA +LGL VIAKI G
Sbjct:  275 EKALELGLHVIAKIRG 290          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THIC1_ARATH (Acetyl-CoA acetyltransferase, cytosolic 1 OS=Arabidopsis thaliana GN=AAT1 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.307e-42
Identity = 84/115 (73.04%), Postives = 98/115 (85.22%), Query Frame = 3
Query:   54 YADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXXASALVVELV 398
            Y DAAQ PE FTTAPALAIPKAI++AGLE+SQVD YEINEAFAVVALANQKLLG+ P+KVNV+GGAV+LGHPLGCSGARIL+TLLG+L+++N KY           ASALV+EL+
Sbjct:  289 YGDAAQEPEFFTTAPALAIPKAIAHAGLESSQVDYYEINEAFAVVALANQKLLGIAPEKVNVNGGAVSLGHPLGCSGARILITLLGILKKRNGKYGVGGVCNGGGGASALVLELL 403          

HSP 2 Score: 24.2534 bits (51), Expect = 9.307e-42
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 2
Query:    5 EKAFKLGLQVIAKITG 52
            EKA +LGL V+AKI G
Sbjct:  273 EKALQLGLLVLAKIKG 288          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THIL_SCHPO (Acetyl-CoA acetyltransferase OS=Schizosaccharomyces pombe GN=erg10 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.608e-31
Identity = 66/115 (57.39%), Postives = 89/115 (77.39%), Query Frame = 3
Query:   54 YADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXXASALVVELV 398
            + +AAQ PE FTT+P+LAIPKA+ +AG+EASQVD YEINEAF+VVA+AN K+LGL+P++VN++GG VA+GHPLG SG+RI+ TL  +L QK+ K            AS++V+E V
Sbjct:  281 WGEAAQDPERFTTSPSLAIPKALKHAGIEASQVDYYEINEAFSVVAVANTKILGLDPERVNINGGGVAMGHPLGSSGSRIICTLAYILAQKDAKIGVAAVCNGGGGASSIVIERV 395          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THIL1_DICDI (Probable acetyl-CoA acetyltransferase OS=Dictyostelium discoideum GN=DDB_G0271544 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.339e-30
Identity = 68/113 (60.18%), Postives = 84/113 (74.34%), Query Frame = 3
Query:   54 YADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXXASALVVE 392
            YADA QAP  F TAPALAIPKA+ NAG+  SQVD +EINEAFAVV LAN K+L ++ +K+NV+GGAVALGHP+G SG RI+VTL  +L+ KN KY           ++ALV+E
Sbjct:  300 YADAEQAPIEFPTAPALAIPKALKNAGINMSQVDLFEINEAFAVVGLANAKILDIDHNKLNVNGGAVALGHPIGSSGCRIVVTLTHLLQNKNLKYGVAAICNGGGGSTALVLE 412          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THIA_CANTR (Acetyl-CoA acetyltransferase IA OS=Candida tropicalis GN=PACTA PE=1 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 1.086e-27
Identity = 60/115 (52.17%), Postives = 84/115 (73.04%), Query Frame = 3
Query:   54 YADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXXASALVVELV 398
            + +AA+ P  FT APALA+PKA+ +AGL   +VD +E+NEAF+VV LAN +L+ +  +K+NV+GGAVA+GHPLGCSGARI+VTLL VL Q+  ++           ASA+V+E +
Sbjct:  283 WGEAARTPFDFTIAPALAVPKAVKHAGLTVDRVDFFELNEAFSVVGLANAELVNIPLEKLNVYGGAVAMGHPLGCSGARIIVTLLSVLTQEGGRFGVAGVCNGGGGASAVVIEKI 397          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THIB_CANTR (Acetyl-CoA acetyltransferase IB OS=Candida tropicalis GN=PACTB PE=1 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 1.419e-27
Identity = 60/115 (52.17%), Postives = 84/115 (73.04%), Query Frame = 3
Query:   54 YADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXXASALVVELV 398
            + +AA+ P  FT APALA+PKA+ +AGL   +VD +E+NEAF+VV LAN +L+ +  +K+NV+GGAVA+GHPLGCSGARI+VTLL VL Q+  ++           ASA+V+E +
Sbjct:  283 WGEAARTPFDFTIAPALAVPKAVKHAGLTVDRVDFFELNEAFSVVGLANAELVKIPLEKLNVYGGAVAMGHPLGCSGARIIVTLLSVLTQEGGRFGAAGVCNGGGGASAIVIEKI 397          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THIL_YEAST (Acetyl-CoA acetyltransferase OS=Saccharomyces cerevisiae GN=ERG10 PE=1 SV=3)

HSP 1 Score: 121.709 bits (304), Expect = 2.420e-27
Identity = 61/116 (52.59%), Postives = 83/116 (71.55%), Query Frame = 3
Query:   54 YADAAQAPEMFTTAPALAIPKAISNAGLE-ASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXXASALVVELV 398
            + +AA  P  FT AP+LA+PKA+ +AG+E  + VD +E NEAF+VV L N K+L L+P KVNV+GGAVALGHPLGCSGAR++VTLL +L+Q+  K            AS++V+E +
Sbjct:  283 WGEAAHQPADFTWAPSLAVPKALKHAGIEDINSVDYFEFNEAFSVVGLVNTKILKLDPSKVNVYGGAVALGHPLGCSGARVVVTLLSILQQEGGKIGVAAICNGGGGASSIVIEKI 398          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THIL_SACBA (Acetyl-CoA acetyltransferase OS=Saccharomyces bayanus GN=ERG10 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.128e-27
Identity = 61/114 (53.51%), Postives = 82/114 (71.93%), Query Frame = 3
Query:   54 YADAAQAPEMFTTAPALAIPKAISNAGLE-ASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXXASALVVE 392
            + +AA  P  FT AP+LA+PKA+ +AG+E  + VD +E NEAF+VV L N K+L L+P KVNV+GGAVALGHPLGCSGAR++VTLL +L+Q+  K            AS++V+E
Sbjct:  283 WGEAAHLPADFTWAPSLAVPKALKHAGIEDINSVDYFEFNEAFSVVGLVNTKILKLDPSKVNVYGGAVALGHPLGCSGARVVVTLLSILQQEGGKIGVAAICNGGGGASSVVIE 396          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THIL_YARLI (Acetyl-CoA acetyltransferase OS=Yarrowia lipolytica GN=PAT1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.344e-22
Identity = 59/115 (51.30%), Postives = 74/115 (64.35%), Query Frame = 3
Query:   54 YADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQKNWKYXXXXXXXXXXXASALVVELV 398
            YADAA AP  FT AP+LAIP A+  AGL    +  +EINEAF+ VALAN   LG++  KVNV GGAVALGHP+G SG RI VTL+  L  K  +Y           ++A+V++ V
Sbjct:  281 YADAATAPIDFTIAPSLAIPAALKKAGLTKDDIALWEINEAFSGVALANLMRLGIDKSKVNVKGGAVALGHPIGASGNRIFVTLVNAL--KEGEYGVAAICNGGGASTAIVIKKV 393          
BLAST of CF835871 vs. ExPASy Swiss-Prot
Match: THIL_RAT (Acetyl-CoA acetyltransferase, mitochondrial OS=Rattus norvegicus GN=Acat1 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.820e-22
Identity = 51/90 (56.67%), Postives = 66/90 (73.33%), Query Frame = 3
Query:   54 YADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 323
            +ADAA  P  F  APA A+PK +  AGL+   +  +E+NEAF+VV LAN K+L ++P KVNVHGGAV+LGHP+G SGARI+V L   L+Q
Sbjct:  312 FADAAVDPIDFPLAPAYAVPKVLKYAGLKKEDIAMWEVNEAFSVVVLANIKMLEIDPQKVNVHGGAVSLGHPIGMSGARIVVHLAHALKQ 401          
The following BLAST results are available for this feature:
BLAST of CF835871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
THIC2_ARATH3.227e-4273.91Probable acetyl-CoA acetyltransferase, cytosolic 2... [more]
THIC1_ARATH9.307e-4273.04Acetyl-CoA acetyltransferase, cytosolic 1 OS=Arabi... [more]
THIL_SCHPO3.608e-3157.39Acetyl-CoA acetyltransferase OS=Schizosaccharomyce... [more]
THIL1_DICDI2.339e-3060.18Probable acetyl-CoA acetyltransferase OS=Dictyoste... [more]
THIA_CANTR1.086e-2752.17Acetyl-CoA acetyltransferase IA OS=Candida tropica... [more]
THIB_CANTR1.419e-2752.17Acetyl-CoA acetyltransferase IB OS=Candida tropica... [more]
THIL_YEAST2.420e-2752.59Acetyl-CoA acetyltransferase OS=Saccharomyces cere... [more]
THIL_SACBA4.128e-2753.51Acetyl-CoA acetyltransferase OS=Saccharomyces baya... [more]
THIL_YARLI2.344e-2251.30Acetyl-CoA acetyltransferase OS=Yarrowia lipolytic... [more]
THIL_RAT6.820e-2256.67Acetyl-CoA acetyltransferase, mitochondrial OS=Rat... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02A17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835871 ID=CF835871; Name=CF835871; organism=Citrus sinensis; type=EST; length=560bp
GAGAGAGAAGGCATTTAAGCTGGGTTTGCAAGTGATCGCCAAGATCACAG
GACTATGCTGATGCTGCTCAGGCACCAGAGATGTTTACAACAGCTCCAGC
CCTAGCCATACCTAAAGCCATTTCAAATGCTGGCTTGGAGGCTTCTCAAG
TTGACTGTTACGAAATAAATGAGGCCTTTGCTGTCGTCGCCCTTGCAAAC
CAGAAATTGCTTGGACTAAATCCTGACAAGGTTAATGTCCATGGTGGAGC
AGTAGCTTTGGGACATCCTCTGGGCTGCAGCGGAGCTCGTATCTTGGTCA
CACTTTTGGGGGTACTTAGGCAGAAAAACTGGAAATACGGTGTTGGTGGC
GTTTGCAACGGAGGAGGAGGTGCATCGGCACTTGTTGTAGAGCTTGTGTA
AGCATTTTCTGTTCGGATTATTATCAACGAGGTTGCACCCTTCTTGTGGA
GGATAATTATGGCCCATTTGGGTGGGGTGTTGTGCAATTGTATCTCCATT
TCTTTTTCATATGTGCTTTCATCTTCAATAAAAAGATAATAATTAAAAAA
AAAAAAAAAA
back to top