CF835902
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835902 vs. ExPASy Swiss-Prot
Match: SF3BB_ARATH (Uncharacterized protein At4g14342 OS=Arabidopsis thaliana GN=At4g14342 PE=3 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 2.998e-39 Identity = 77/87 (88.51%), Postives = 80/87 (91.95%), Query Frame = -3 Query: 308 MQVSDRSNINSQLEHLQAKSVGTGHGDLIRFEWAVNIQRDSYASYIGHCPMLAYFAIAENESIGRELYNFMQKMLLPCGLPPEREDD 568 MQ SDR NINSQLEHLQAK VGTGH DL RFEWAVNIQRDSYASYIGH PML+YFAIAENESIGRE YNFMQKMLLPCGLPPERE++ Sbjct: 1 MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREEE 87
BLAST of CF835902 vs. ExPASy Swiss-Prot
Match: SF3BA_ARATH (Uncharacterized protein At3g23325 OS=Arabidopsis thaliana GN=At3g23325 PE=2 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 2.998e-39 Identity = 77/87 (88.51%), Postives = 79/87 (90.80%), Query Frame = -3 Query: 308 MQVSDRSNINSQLEHLQAKSVGTGHGDLIRFEWAVNIQRDSYASYIGHCPMLAYFAIAENESIGRELYNFMQKMLLPCGLPPEREDD 568 MQ SDR NINSQLEHLQAK VGTGH DL RFEW VNIQRDSYASYIGH PML+YFAIAENESIGRE YNFMQKMLLPCGLPPERED+ Sbjct: 1 MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE 87
BLAST of CF835902 vs. ExPASy Swiss-Prot
Match: SF3B5_DROME (Probable splicing factor 3B subunit 5 OS=Drosophila melanogaster GN=CG11985 PE=1 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.766e-23 Identity = 50/85 (58.82%), Postives = 63/85 (74.12%), Query Frame = -3 Query: 308 VSDRSNINSQLEHLQAKSVGTGHGDLIRFEWAVNIQRDSYASYIGHCPMLAYFAIAENESIGRELYNFMQKMLLPCGLPPEREDD 562 + +R NI+SQLEHLQ+K +GTGH D +FEW N RDS ASY+GH +L YFAIAENES R +N M++ML PCG PPE+ +D Sbjct: 1 MGERYNIHSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENESKARVRFNLMERMLQPCGPPPEKLED 85
BLAST of CF835902 vs. ExPASy Swiss-Prot
Match: SF3B5_HUMAN (Splicing factor 3B subunit 5 OS=Homo sapiens GN=SF3B5 PE=1 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.144e-22 Identity = 48/85 (56.47%), Postives = 63/85 (74.12%), Query Frame = -3 Query: 308 VSDRSNINSQLEHLQAKSVGTGHGDLIRFEWAVNIQRDSYASYIGHCPMLAYFAIAENESIGRELYNFMQKMLLPCGLPPEREDD 562 ++DR I+SQLEHLQ+K +GTGH D ++EW VN RDSY SY+GH +L YFAIAENES R +N M+KML PCG P ++ ++ Sbjct: 1 MTDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPCGPPADKPEE 85
BLAST of CF835902 vs. ExPASy Swiss-Prot
Match: SF3B5_BOVIN (Splicing factor 3B subunit 5 OS=Bos taurus GN=SF3B5 PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.144e-22 Identity = 48/85 (56.47%), Postives = 63/85 (74.12%), Query Frame = -3 Query: 308 VSDRSNINSQLEHLQAKSVGTGHGDLIRFEWAVNIQRDSYASYIGHCPMLAYFAIAENESIGRELYNFMQKMLLPCGLPPEREDD 562 ++DR I+SQLEHLQ+K +GTGH D ++EW VN RDSY SY+GH +L YFAIAENES R +N M+KML PCG P ++ ++ Sbjct: 1 MTDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPCGPPADKPEE 85
BLAST of CF835902 vs. ExPASy Swiss-Prot
Match: SF3B5_MOUSE (Splicing factor 3B subunit 5 OS=Mus musculus GN=Sf3b5 PE=2 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.652e-21 Identity = 47/85 (55.29%), Postives = 62/85 (72.94%), Query Frame = -3 Query: 308 VSDRSNINSQLEHLQAKSVGTGHGDLIRFEWAVNIQRDSYASYIGHCPMLAYFAIAENESIGRELYNFMQKMLLPCGLPPEREDD 562 ++DR I+SQLEHLQ+K +GTGH D ++EW VN RDSY SY+GH +L YFAIAENES R +N M+KML P G P ++ ++ Sbjct: 1 MTDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPSGPPADKPEE 85
BLAST of CF835902 vs. ExPASy Swiss-Prot
Match: SF3B5_DICDI (Splicing factor 3B subunit 5 OS=Dictyostelium discoideum GN=sf3b5 PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 6.279e-21 Identity = 45/85 (52.94%), Postives = 62/85 (72.94%), Query Frame = -3 Query: 308 VSDRSNINSQLEHLQAKSVGTGHGDLIRFEWAVNIQRDSYASYIGHCPMLAYFAIAENESIGRELYNFMQKMLLPCGLPPEREDD 562 +S+R ++NSQLEHLQ + VGTGH D+ + EW N RDS +S+IGH L+ F+IAENES+GR YN + KM+ PCG P+ +D+ Sbjct: 1 MSERESLNSQLEHLQMRYVGTGHADISKHEWLTNQHRDSLSSFIGHSSFLSLFSIAENESVGRVRYNTLTKMISPCGPAPKIKDN 85
BLAST of CF835902 vs. ExPASy Swiss-Prot
Match: YHV5_SCHPO (Uncharacterized protein C211.05 OS=Schizosaccharomyces pombe GN=SPBC211.05 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 8.220e-13 Identity = 34/80 (42.50%), Postives = 51/80 (63.75%), Query Frame = -3 Query: 323 VSDRSNINSQLEHLQAKSVGTGHGDLIRFEWAVNIQRDSYASYIGHCPMLAYFAIAENESIGRELYNFMQKMLLPCGLPP 562 ++DR ++LE LQA+ VG G+ ++EW VN RD+ +S +GH P+LAY A A E + N ++KM++PCG PP Sbjct: 1 MADRLRSQAKLEQLQARYVGVGNAFTTKYEWMVNQHRDTLSSVVGHPPLLAYMATALGEPRVQVRKNLLEKMIMPCGPPP 80 The following BLAST results are available for this feature:
BLAST of CF835902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF835902 ID=CF835902; Name=CF835902; organism=Citrus sinensis; type=EST; length=585bpback to top |