CF835980

Overview
NameCF835980
Unique NameCF835980
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10981 contig Csv1_Contig10981:193..824. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835980 vs. ExPASy Swiss-Prot
Match: MGDP1_MOUSE (Magnesium-dependent phosphatase 1 OS=Mus musculus GN=Mdp1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.430e-18
Identity = 47/115 (40.87%), Postives = 70/115 (60.87%), Query Frame = -3
Query:  265 LYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHFRTGVPFNSMLFFDDEDRNIDAVSKMGVPGILVGNGVNLGALRQGFSKFSQ 609
            LYP    +L  L+  G+ VA ASR+     AN  LE  ++   F+ +EI+     K  HF+R+H +TGVPF+ M+FFDDE+RNI  V ++GV  I + +G++L  L QG   F++
Sbjct:   47 LYPEVPEVLGRLQSLGVPVAAASRTSEIQGANQLLELFDLGKYFIQREIYPG--SKVTHFERLHHKTGVPFSQMVFFDDENRNIIDVGRLGVTCIHIRDGMSLQTLTQGLETFAK 159          
BLAST of CF835980 vs. ExPASy Swiss-Prot
Match: MGDP1_HUMAN (Magnesium-dependent phosphatase 1 OS=Homo sapiens GN=MDP1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.641e-18
Identity = 49/115 (42.61%), Postives = 69/115 (60.00%), Query Frame = -3
Query:  265 LYPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIKSMFVAKEIFSSWSHKTDHFQRIHFRTGVPFNSMLFFDDEDRNIDAVSKMGVPGILVGNGVNLGALRQGFSKFSQ 609
            LYP    +L  L+  G+  A ASR+   + AN  LE  ++   FV +EI+     K  HF+R+  +TG+PF+ M+FFDDE RNI  VSK+GV  I + NG+NL  L QG   F++
Sbjct:   47 LYPEVPEVLKRLQSLGVPGAAASRTSEIEGANQLLELFDLFRYFVHREIYPG--SKITHFERLQQKTGIPFSQMIFFDDERRNIVDVSKLGVTCIHIQNGMNLQTLSQGLETFAK 159          
BLAST of CF835980 vs. ExPASy Swiss-Prot
Match: MGDP1_SCHPO (Putative magnesium-dependent phosphatase P8B7.31 OS=Schizosaccharomyces pombe GN=SPBP8B7.31 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.381e-11
Identity = 42/119 (35.29%), Postives = 67/119 (56.30%), Query Frame = -3
Query:  271 YPHAKGILHALKDKGIDVAVASRSPSPDIANTFLEKLNIK---SMFVAKEIFS---SW-SHKTDHFQRIHFRTGVPFNSMLFFDDEDRNIDAVSKMGVPGILVGNGVNLGALRQGFSKF 606
            Y    GIL  L+++ + + VASR+ +P  A   L  + +    S+  A E F+   +W   K DHF+ IH  +G+ +  M+FFDDE RN + V ++GV   LV +G+N  +  QG +K+
Sbjct:   53 YSDITGILQELRNQKVTLCVASRTCAPKYAKQALNLMKVPIDGSLKPAIEFFTYVKAWPGSKMDHFKEIHNESGIDYREMVFFDDESRNRE-VERLGVTFCLVPDGLNRASFEQGINKW 170          
The following BLAST results are available for this feature:
BLAST of CF835980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
MGDP1_MOUSE3.430e-1840.87Magnesium-dependent phosphatase 1 OS=Mus musculus ... [more]
MGDP1_HUMAN7.641e-1842.61Magnesium-dependent phosphatase 1 OS=Homo sapiens ... [more]
MGDP1_SCHPO2.381e-1135.29Putative magnesium-dependent phosphatase P8B7.31 O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02D18_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02D18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835980 ID=CF835980; Name=CF835980; organism=Citrus sinensis; type=EST; length=632bp
TTGTAAGGGTAACACGCCCAAAACATACTTCTTTTTGACCCGTTGAAAAA
CAATACATAACTCAGTTCATAAACAGAATCTGGATTTTCAAAATAATCCA
CAACAGCGAATGGAAACAATTTTCAGGGGGTTAAATTGGGGTAAAAATGA
GCAAATGCCCTTATACAGAGCTCTTCATTTCTGGTCTATCTTCTCAAATG
CATCTGGCTTTTGAGAGAACTTGGATATCCATTTTTGCTTGTTCTTCTGA
AATGTATTCCAGTTTTGCGAGAATTTTGAAAAACCTTGCCTTAATGCTCC
AAGATTAACCCCATTACCAACCAAAATGCCTGGCACCCCCATTTTTGAAA
CCGCATCAATGTTCCGATCCTCATCATCAAAAAAGAGCATCGAGTTAAAA
GGAACTCCAGTTCTAAAATGAATTCTCTGGAAGTGATCGGTCTTATGTGA
CCAACTGGAAAAAATCTCCTTTGCAACAAACATGGACTTGATGTTCAATT
TTTCGAGAAAAGTGTTTGCTATATCAGGGCTCGGCGACCGAGAAGCAACA
GCTACATCAATCCCTTTGTCCTTGAGAGCATGTAATATGCCTTTAGCATG
AGGATACAAAGATGGCATTTCACGTTTGGAGC
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