CF836003
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RH36_ARATH (DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis thaliana GN=RH36 PE=2 SV=1) HSP 1 Score: 228.024 bits (580), Expect = 3.832e-59 Identity = 107/138 (77.54%), Postives = 123/138 (89.13%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVLLQEDPDI 710 F GLGLAEWAV+TCKELGMR+PTPVQTHC+P IL G+DVLGLAQTGSGKTAAFALPILHRLAEDPYG ALV+TPTRELA+QLAEQFKALGS L+LRC + GGMD+LT SL++RPH+VI TPG +KVLL+ +PD+ Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPGRIKVLLENNPDV 197
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RH36_ORYSJ (DEAD-box ATP-dependent RNA helicase 36 OS=Oryza sativa subsp. japonica GN=Os07g0633500 PE=3 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 2.181e-46 Identity = 91/138 (65.94%), Postives = 104/138 (75.36%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVLLQEDPDI 710 FA LGL++W V C LGMR PT VQ CIP LEG+DVLG+A+TGSGKTAAFALPILHRL EDPYG AL + PTRELA QLAEQF+ALG+ L LRC A GG D L AK L RPHVV+ATPG + L+ +DPD+ Sbjct: 79 FAELGLSQWLVDVCDSLGMRVPTAVQRRCIPRALEGRDVLGIAETGSGKTAAFALPILHRLGEDPYGVAALALAPTRELAAQLAEQFRALGAPLGLRCLAAIGGFDSLGQAKGLARRPHVVVATPGRIATLINDDPDL 216
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DDX49_HUMAN (Probable ATP-dependent RNA helicase DDX49 OS=Homo sapiens GN=DDX49 PE=1 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 8.028e-41 Identity = 79/128 (61.72%), Postives = 99/128 (77.34%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680 FA LGL+ W V+ C++LG+++PTPVQ CIP ILEG+D LG A+TGSGKTAAF LPIL +L+EDPYG LV+TPTRELAYQ+AEQF+ LG L L+ + GGMD++ A L +PHVVIATPG + Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGRL 131
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DDX49_MOUSE (Probable ATP-dependent RNA helicase DDX49 OS=Mus musculus GN=Ddx49 PE=2 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 1.369e-40 Identity = 78/128 (60.94%), Postives = 99/128 (77.34%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680 FA +GL+ W V+ C++LG+++PTPVQ CIP ILEG+D LG A+TGSGKTAAF LPIL +L+EDPYG LV+TPTRELAYQ+AEQF+ LG L L+ + GGMD++ A L +PHVVIATPG + Sbjct: 4 FAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGRL 131
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DDX49_DICDI (Probable ATP-dependent RNA helicase ddx49 OS=Dictyostelium discoideum GN=ddx49 PE=3 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.326e-35 Identity = 66/128 (51.56%), Postives = 96/128 (75.00%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680 F LGL W V CK+LG + P+ +Q + IP IL+G+D++ A+TGSGKTA+FA+PIL++L+EDPYG A+++TPTRELA Q+ EQF A+G+ +++ C V GG+D +T A L RPH+++ATPG + Sbjct: 6 FEELGLTTWLVANCKQLGFKAPSNIQANTIPEILKGRDIIASAKTGSGKTASFAIPILNQLSEDPYGVFAVILTPTRELAVQIGEQFNAIGAPMNVNCSVVIGGIDNVTQALILDKRPHIIVATPGRL 133
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RRP3_YARLI (ATP-dependent rRNA helicase RRP3 OS=Yarrowia lipolytica GN=RRP3 PE=3 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 5.573e-34 Identity = 67/128 (52.34%), Postives = 93/128 (72.66%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680 F LG+ + +TC+EL +PTP+Q IP LEG+D++GLAQTGSGKTAAFA+P+L L E+P +V+ PTRELAYQ++E F+ALGS + LR V GGM+++T A +L +PHV++ATPG + Sbjct: 66 FKDLGVIDSICETCEELKFTKPTPIQAQSIPYALEGRDIIGLAQTGSGKTAAFAIPVLQSLYENPQPLYCVVLAPTRELAYQISETFEALGSAMGLRTAVVVGGMNMMTQAVALSKKPHVIVATPGRL 193
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DDX47_MOUSE (Probable ATP-dependent RNA helicase DDX47 OS=Mus musculus GN=Ddx47 PE=2 SV=2) HSP 1 Score: 140.969 bits (354), Expect = 6.161e-33 Identity = 64/128 (50.00%), Postives = 93/128 (72.66%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680 F LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGSGKT AFALPIL+ L E P ALV+TPTRELA+Q++EQF+ALGS + ++C + GG+D ++ + +L +PH+VIATPG + Sbjct: 26 FKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRL 153
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DDX47_BOVIN (Probable ATP-dependent RNA helicase DDX47 OS=Bos taurus GN=DDX47 PE=2 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 6.161e-33 Identity = 64/128 (50.00%), Postives = 93/128 (72.66%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680 F LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGSGKT AFALPIL+ L E P ALV+TPTRELA+Q++EQF+ALGS + ++C + GG+D ++ + +L +PH+VIATPG + Sbjct: 28 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRL 155
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RRP3_CRYNE (ATP-dependent rRNA helicase RRP3 OS=Cryptococcus neoformans GN=RRP3 PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 1.051e-32 Identity = 64/128 (50.00%), Postives = 93/128 (72.66%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680 FA LG++ + C +G ++P+ +Q IP LEGKD++GLAQTGSGKTAAF+LPIL L E+P ALV+ PTRELAYQ+++Q +LGSG+ +R + GGMD+++ + +L RPH+++ATPG + Sbjct: 40 FADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQTLWENPQPFFALVLAPTRELAYQISQQVTSLGSGIGVRTAVLVGGMDMMSQSIALSKRPHIIVATPGRL 167
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP8_COCIM (ATP-dependent RNA helicase DBP8 OS=Coccidioides immitis GN=DBP8 PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 1.051e-32 Identity = 68/128 (53.12%), Postives = 91/128 (71.09%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680 F+ LGLA W V + + +RRPT +Q CIP IL+G+D +G ++TGSGKT AFA PILHR +EDP+G A+V+TPTRELA Q+ EQFKA+ + L+ + GG ++ A +L RPHVVIATPG + Sbjct: 108 FSSLGLAPWLVGSLSAMAIRRPTAIQRACIPEILKGRDCIGGSRTGSGKTVAFAAPILHRWSEDPFGIFAVVLTPTRELALQIFEQFKAISAPQSLKPVLITGGSEMRPQAIALSTRPHVVIATPGRL 235 The following BLAST results are available for this feature:
BLAST of CF836003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836003 ID=CF836003; Name=CF836003; organism=Citrus sinensis; type=EST; length=712bpback to top |