CF836003

Overview
NameCF836003
Unique NameCF836003
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RH36_ARATH (DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis thaliana GN=RH36 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.832e-59
Identity = 107/138 (77.54%), Postives = 123/138 (89.13%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVLLQEDPDI 710
            F GLGLAEWAV+TCKELGMR+PTPVQTHC+P IL G+DVLGLAQTGSGKTAAFALPILHRLAEDPYG  ALV+TPTRELA+QLAEQFKALGS L+LRC  + GGMD+LT   SL++RPH+VI TPG +KVLL+ +PD+
Sbjct:   60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPGRIKVLLENNPDV 197          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RH36_ORYSJ (DEAD-box ATP-dependent RNA helicase 36 OS=Oryza sativa subsp. japonica GN=Os07g0633500 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.181e-46
Identity = 91/138 (65.94%), Postives = 104/138 (75.36%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVLLQEDPDI 710
            FA LGL++W V  C  LGMR PT VQ  CIP  LEG+DVLG+A+TGSGKTAAFALPILHRL EDPYG  AL + PTRELA QLAEQF+ALG+ L LRC A  GG D L  AK L  RPHVV+ATPG +  L+ +DPD+
Sbjct:   79 FAELGLSQWLVDVCDSLGMRVPTAVQRRCIPRALEGRDVLGIAETGSGKTAAFALPILHRLGEDPYGVAALALAPTRELAAQLAEQFRALGAPLGLRCLAAIGGFDSLGQAKGLARRPHVVVATPGRIATLINDDPDL 216          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DDX49_HUMAN (Probable ATP-dependent RNA helicase DDX49 OS=Homo sapiens GN=DDX49 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.028e-41
Identity = 79/128 (61.72%), Postives = 99/128 (77.34%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            FA LGL+ W V+ C++LG+++PTPVQ  CIP ILEG+D LG A+TGSGKTAAF LPIL +L+EDPYG   LV+TPTRELAYQ+AEQF+ LG  L L+   + GGMD++  A  L  +PHVVIATPG +
Sbjct:    4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGRL 131          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DDX49_MOUSE (Probable ATP-dependent RNA helicase DDX49 OS=Mus musculus GN=Ddx49 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.369e-40
Identity = 78/128 (60.94%), Postives = 99/128 (77.34%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            FA +GL+ W V+ C++LG+++PTPVQ  CIP ILEG+D LG A+TGSGKTAAF LPIL +L+EDPYG   LV+TPTRELAYQ+AEQF+ LG  L L+   + GGMD++  A  L  +PHVVIATPG +
Sbjct:    4 FAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGRL 131          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DDX49_DICDI (Probable ATP-dependent RNA helicase ddx49 OS=Dictyostelium discoideum GN=ddx49 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.326e-35
Identity = 66/128 (51.56%), Postives = 96/128 (75.00%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            F  LGL  W V  CK+LG + P+ +Q + IP IL+G+D++  A+TGSGKTA+FA+PIL++L+EDPYG  A+++TPTRELA Q+ EQF A+G+ +++ C  V GG+D +T A  L  RPH+++ATPG +
Sbjct:    6 FEELGLTTWLVANCKQLGFKAPSNIQANTIPEILKGRDIIASAKTGSGKTASFAIPILNQLSEDPYGVFAVILTPTRELAVQIGEQFNAIGAPMNVNCSVVIGGIDNVTQALILDKRPHIIVATPGRL 133          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RRP3_YARLI (ATP-dependent rRNA helicase RRP3 OS=Yarrowia lipolytica GN=RRP3 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.573e-34
Identity = 67/128 (52.34%), Postives = 93/128 (72.66%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            F  LG+ +   +TC+EL   +PTP+Q   IP  LEG+D++GLAQTGSGKTAAFA+P+L  L E+P     +V+ PTRELAYQ++E F+ALGS + LR   V GGM+++T A +L  +PHV++ATPG +
Sbjct:   66 FKDLGVIDSICETCEELKFTKPTPIQAQSIPYALEGRDIIGLAQTGSGKTAAFAIPVLQSLYENPQPLYCVVLAPTRELAYQISETFEALGSAMGLRTAVVVGGMNMMTQAVALSKKPHVIVATPGRL 193          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DDX47_MOUSE (Probable ATP-dependent RNA helicase DDX47 OS=Mus musculus GN=Ddx47 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 6.161e-33
Identity = 64/128 (50.00%), Postives = 93/128 (72.66%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            F  LG+ +   + C +LG  +PT +Q   IP  L+G+D++GLA+TGSGKT AFALPIL+ L E P    ALV+TPTRELA+Q++EQF+ALGS + ++C  + GG+D ++ + +L  +PH+VIATPG +
Sbjct:   26 FKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRL 153          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DDX47_BOVIN (Probable ATP-dependent RNA helicase DDX47 OS=Bos taurus GN=DDX47 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.161e-33
Identity = 64/128 (50.00%), Postives = 93/128 (72.66%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            F  LG+ +   + C +LG  +PT +Q   IP  L+G+D++GLA+TGSGKT AFALPIL+ L E P    ALV+TPTRELA+Q++EQF+ALGS + ++C  + GG+D ++ + +L  +PH+VIATPG +
Sbjct:   28 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRL 155          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RRP3_CRYNE (ATP-dependent rRNA helicase RRP3 OS=Cryptococcus neoformans GN=RRP3 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.051e-32
Identity = 64/128 (50.00%), Postives = 93/128 (72.66%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            FA LG++    + C  +G ++P+ +Q   IP  LEGKD++GLAQTGSGKTAAF+LPIL  L E+P    ALV+ PTRELAYQ+++Q  +LGSG+ +R   + GGMD+++ + +L  RPH+++ATPG +
Sbjct:   40 FADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQTLWENPQPFFALVLAPTRELAYQISQQVTSLGSGIGVRTAVLVGGMDMMSQSIALSKRPHIIVATPGRL 167          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP8_COCIM (ATP-dependent RNA helicase DBP8 OS=Coccidioides immitis GN=DBP8 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.051e-32
Identity = 68/128 (53.12%), Postives = 91/128 (71.09%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            F+ LGLA W V +   + +RRPT +Q  CIP IL+G+D +G ++TGSGKT AFA PILHR +EDP+G  A+V+TPTRELA Q+ EQFKA+ +   L+   + GG ++   A +L  RPHVVIATPG +
Sbjct:  108 FSSLGLAPWLVGSLSAMAIRRPTAIQRACIPEILKGRDCIGGSRTGSGKTVAFAAPILHRWSEDPFGIFAVVLTPTRELALQIFEQFKAISAPQSLKPVLITGGSEMRPQAIALSTRPHVVIATPGRL 235          
The following BLAST results are available for this feature:
BLAST of CF836003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH36_ARATH3.832e-5977.54DEAD-box ATP-dependent RNA helicase 36 OS=Arabidop... [more]
RH36_ORYSJ2.181e-4665.94DEAD-box ATP-dependent RNA helicase 36 OS=Oryza sa... [more]
DDX49_HUMAN8.028e-4161.72Probable ATP-dependent RNA helicase DDX49 OS=Homo ... [more]
DDX49_MOUSE1.369e-4060.94Probable ATP-dependent RNA helicase DDX49 OS=Mus m... [more]
DDX49_DICDI1.326e-3551.56Probable ATP-dependent RNA helicase ddx49 OS=Dicty... [more]
RRP3_YARLI5.573e-3452.34ATP-dependent rRNA helicase RRP3 OS=Yarrowia lipol... [more]
DDX47_MOUSE6.161e-3350.00Probable ATP-dependent RNA helicase DDX47 OS=Mus m... [more]
DDX47_BOVIN6.161e-3350.00Probable ATP-dependent RNA helicase DDX47 OS=Bos t... [more]
RRP3_CRYNE1.051e-3250.00ATP-dependent rRNA helicase RRP3 OS=Cryptococcus n... [more]
DBP8_COCIM1.051e-3253.13ATP-dependent RNA helicase DBP8 OS=Coccidioides im... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836003 ID=CF836003; Name=CF836003; organism=Citrus sinensis; type=EST; length=712bp
GATGACTGCTCCCTTAAACACCCGAAAATCGAATCCTTGGCCTTCTCCAG
CCCTTAATACCTATATTCATCACCCTAAATGGAAAATTGTTGATTTATAC
TGACTGAGTAAACATGGACGAACACATCCACCTCGACGGGAACTTCCCTC
TCTTCGCCAAACCCAAATCTAAAACCAGAATCAAACCGGAACCGCAACCT
GAACCTGAACCGGAATCCAAAAACGCTAAAACCGCTCGACTCGAGAAATT
CACAACTCCCGATCCTAACTCTACCACCACCGACTCCACCGTCACTTTCG
CCGGCCTCGGCCTCGCCGAATGGGCGGTTCAGACATGCAAGGAGCTTGGC
ATGCGGCGGCCGACACCGGTCCAAACCCACTGCATACCCTAAATTCTCGA
GGGCAAGGACGTGCTGGGGCTGGCGCAGACCGGTAGCGGCAAAACCGCAG
CGTTCGCACTTCCGATACTCCACCGTTTGGCAGAGGACCCGTATGGGGCA
TTGGCACTGGTTATAACGCCGACAAGGGAGCTGGCGTACCAGTTGGCGGA
ACAGTTTAAGGCTCTGGGTTCGGGCTTGCATTTGAGGTGTGAGGCTGTGG
CTGGAGGAATGGATTTGTTGACCCCAGCTAAGAGCTTAATGAATAGGCCG
CATGTCGTTATTGCTACCCCTGGAATGATGAAGGTTTTGCTCCAAGAGGA
CCCTGATATCCC
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