CF836021

Overview
NameCF836021
Unique NameCF836021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF836021 vs. ExPASy Swiss-Prot
Match: YC54L_SYNY3 (Ycf54-like protein OS=Synechocystis sp. (strain PCC 6803) GN=slr1780 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.103e-15
Identity = 48/102 (47.06%), Postives = 70/102 (68.63%), Query Frame = -1 
Query:  346 YYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRPA--VALVSTNGPWITFMKLRLDRVLSDSYEAGS--LEEALAS 639
            YY+ +A+ KF+L EEE F+E+L ER R+YGE++KE DFW VI+P FL+       + + P   VA+VSTN  +I ++KLRL+ VL+  +EA S  + + LAS
Sbjct:   31 YYYALASQKFLL-EEEPFEEVLKERRRDYGEKNKEIDFWQVIQPAFLNAPELAEAKAKAPEKNVAIVSTNKSFIVWVKLRLEYVLTGEFEAPSDAIPDPLAS 131
The following BLAST results are available for this feature:
BLAST of CF836021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YC54L_SYNY33.103e-1547.06Ycf54-like protein OS=Synechocystis sp. (strain PC... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02E16_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836021 ID=CF836021; Name=CF836021; organism=Citrus sinensis; type=EST; length=789bp
TTTTTTTTTTTTTTTTTCTGGAAATATAATGTTATTACCTCCTCCCATAT
CAAATATTAACTTGTCGATTTCAGGTCCTGAAGAACTAACCTTCAAAGTT
TAAAATATGAACTGCTTCACCATTGCATGCAAATCTCAATCGCTACTTAC
TAATACATGATGAAAATTCGTCTGTTAACAAGAGTTGAGAAGAAAAGATT
AAAAAAAAATAAAAAAGGAAATGTTGCCCTATACTTTTGACCCTTTTGAT
CCGGTAGGCAAGAAGGCCTCCCACCATCCAAATTCATATTTCGGATAAGG
TGCCACCCACTTCTCTTGCTTCTCAAACTCGAGAGTGGCAGGATTAGAGG
CTAAAGCTTCCTCTAGACTGCCAGCTTCATAGCTATCTGATAAAACCCGG
TCCAGCCTCAGTTTCATAAACGTAATCCAGGGACCATTAGTTGAAACCAG
AGCGACAGCAGGTCTGCGCAATCTCTTAGTAATGTTAGGGAACTTATCCA
AGAACTTGGGCTCAATAACTAACCAAAAGTCCTGCTCTTTACTACGCTCT
CCATAGTTCCGTAGGCGCTCGAACAAGAGCTCCTGGAAGTGCTCTTCTTC
GTCCAGCATGAACTTTGCATTCGCAACAACAAAATAATACTTGTTTGCTT
CCTTTTCAGGAGGAACAGAGGAGGAACTAATCTGGTTGGAGTCAACAGAA
GCCACGGCCGTCTTGAAGCTTCCTCTGCGTCCCTTCAAGTTTGAATGAGC
AGAAACAAGACCCAGTCCCTGTGGCAATGTATGATTGCT
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