CF836036

Overview
NameCF836036
Unique NameCF836036
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836036_ssr15 microsatellite CF836036_ssr15:15..44. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2262 contig Csv1_Contig2262:22..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836036 vs. ExPASy Swiss-Prot
Match: NUDT4_ARATH (Nudix hydrolase 4 OS=Arabidopsis thaliana GN=NUDT4 PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.227e-47
Identity = 92/150 (61.33%), Postives = 118/150 (78.67%), Query Frame = 3
Query:  234 VGNLVSRTGRHLQRYQK-GRRQVVGCIPYRYKCVKQSLD-INEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWM 677
            V +LVSRTGR LQRY   G RQVVGC+PYRYK  KQ ++ +  + ++VL++S+QKGKGMLFPKGGWE DES++EAALRETIEEAGVTG +E E LG+W +KS+ H+  + GYMF LLV  +   WPE  +R R+W+S+ EAR+VCQ+WWM
Sbjct:   40 VVSLVSRTGRDLQRYDHAGYRQVVGCVPYRYK--KQEVNGVETQVIQVLLVSAQKGKGMLFPKGGWETDESMEEAALRETIEEAGVTGELE-EKLGKWQYKSKRHSIIHDGYMFALLVSQEFERWPEAEMRQRRWVSLDEAREVCQNWWM 186          
BLAST of CF836036 vs. ExPASy Swiss-Prot
Match: NUD17_ARATH (Nudix hydrolase 17, mitochondrial OS=Arabidopsis thaliana GN=NUDT17 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.681e-45
Identity = 88/145 (60.69%), Postives = 112/145 (77.24%), Query Frame = 3
Query:  243 LVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWM 677
            L SRTGR  QRY KGRRQVVGC+PYR+K       I++E +EVLVISSQKG  ++FPKGGWE+DES++EAA RE +EEAGV G VE +L G+W+F S++  T Y+G MFP+LV +QL  WPE++VR R WM+V EAR+ C+ WWM
Sbjct:    9 LASRTGRQFQRYNKGRRQVVGCVPYRFKLSNDG-KISDE-VEVLVISSQKGHALMFPKGGWELDESVEEAASRECLEEAGVLGNVEHQL-GKWDFLSKSRGTYYEGLMFPMLVTEQLELWPEQHVRQRIWMNVTEAREACRDWWM 150          
BLAST of CF836036 vs. ExPASy Swiss-Prot
Match: NUD18_ARATH (Nudix hydrolase 18, mitochondrial OS=Arabidopsis thaliana GN=NUDT18 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.746e-45
Identity = 88/145 (60.69%), Postives = 113/145 (77.93%), Query Frame = 3
Query:  243 LVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWM 677
            LVSRTGR  QRY KGRRQVVGCIPYR K +     I++E  EVLVISSQKG  ++FPKGGWE+DES++EAA RE++EEAGV G VE +L G+W+F S++  T Y+G+MFP+LV+++L  WPE+++R R WM V EAR  C+ WWM
Sbjct:    4 LVSRTGRQSQRYNKGRRQVVGCIPYRLK-ISSDGTISDE-FEVLVISSQKGHALMFPKGGWELDESVEEAASRESLEEAGVVGNVERQL-GKWDFLSKSKGTFYEGFMFPMLVKEELELWPEQHLRQRIWMKVDEARDACRDWWM 145          
BLAST of CF836036 vs. ExPASy Swiss-Prot
Match: NUD21_ARATH (Nudix hydrolase 21, chloroplastic OS=Arabidopsis thaliana GN=NUDT21 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.892e-45
Identity = 96/165 (58.18%), Postives = 118/165 (71.52%), Query Frame = 3
Query:  189 VAQETIVSLVTPENVVGNLVSRTGRHLQRYQK-GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWM 677
            +  + IV + TP   V +LVSRTGR LQRY   G RQVVGC+PYRYK           ++EVL+IS+QK GKGML PKGGWEIDESI+EAALRETIEEAGVTG +E E LG+W +KS+ H   + G+MFPLLV  Q   WPE   R RKW+S++EA ++CQ+ WM
Sbjct:   26 IPSKKIVPVPTPSEKVVSLVSRTGRDLQRYNTAGYRQVVGCVPYRYK------KHGGGEIEVLLISAQKKGKGMLLPKGGWEIDESIEEAALRETIEEAGVTGQLE-ESLGKWQYKSKRHTMIHDGHMFPLLVSQQFEIWPESEFRQRKWVSLSEAIELCQNSWM 183          
BLAST of CF836036 vs. ExPASy Swiss-Prot
Match: NUD16_ARATH (Nudix hydrolase 16, mitochondrial OS=Arabidopsis thaliana GN=NUDT16 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.514e-35
Identity = 75/155 (48.39%), Postives = 105/155 (67.74%), Query Frame = 3
Query:  240 NLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEED---LEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDY------QGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWM 677
            +LV+RTGR  QRY+ G R V GCIP+RY  V    D N E    ++VL+ISS  G G+LFPKGGWE DE+++EAA RE +EEAGV GI+  + LG + FKS++H  ++      +  M+ L V+++LA WPE   R+RKW+++ EA + C+H WM
Sbjct:    3 DLVARTGRLQQRYEDGSRLVAGCIPFRY--VNSDKDGNSESGKVIQVLMISSSSGPGLLFPKGGWENDETVREAAAREAVEEAGVRGIL-MDFLGNYEFKSKSHQDEFSPEGLCKAAMYALYVKEELATWPEHETRTRKWLTIEEAVESCRHPWM 154          
BLAST of CF836036 vs. ExPASy Swiss-Prot
Match: NUD13_ARATH (Nudix hydrolase 13, mitochondrial OS=Arabidopsis thaliana GN=NUDT13 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.251e-31
Identity = 72/160 (45.00%), Postives = 104/160 (65.00%), Query Frame = 3
Query:  234 VGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQ----SLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTD--------YQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWM 677
            + NL +RTGR  QRY    R V GCIPYR    ++    S+D  E  L+VL+ISS     ++FPKGGWE DE++ EAA RE +EEAGV GI+  + LG W F+S++ + +         +GYMF L V+++LA WPE++ R R+W++V EA ++C++ WM
Sbjct:    1 MSNLSARTGRDHQRYDNNFRLVSGCIPYRLVKDEEEDSTSVDF-ENKLQVLMISSPNRHDLVFPKGGWEDDETVLEAASREAMEEAGVKGILREDPLGVWEFRSKSSSVEADCCLGGGCKGYMFALEVKEELAIWPEQDDRERRWLNVKEALELCRYEWM 159          
BLAST of CF836036 vs. ExPASy Swiss-Prot
Match: NUD12_ARATH (Nudix hydrolase 12, mitochondrial OS=Arabidopsis thaliana GN=NUDT12 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.957e-31
Identity = 73/159 (45.91%), Postives = 96/159 (60.38%), Query Frame = 3
Query:  243 LVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEED--------LEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTD------YQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWM 677
            L SRTGR  QRY    R V GCIPYR        D  EED        LEVL++SS     ++FPKGGWE DE++ EAA RE IEEAGV GI+    LG W F+S++   +       +GYMF L V ++L +WPE+  R R+W++V EA ++C++ WM
Sbjct:    4 LSSRTGRDRQRYDNNFRLVSGCIPYRL----MKADETEEDSGVDFVNKLEVLMVSSPNRHDLVFPKGGWEDDETVLEAASREAIEEAGVKGILRELPLGVWEFRSKSSTVEDECLGGCKGYMFALKVTEELEDWPERKNRERRWLTVKEALELCRYEWM 158          
The following BLAST results are available for this feature:
BLAST of CF836036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
NUDT4_ARATH5.227e-4761.33Nudix hydrolase 4 OS=Arabidopsis thaliana GN=NUDT4... [more]
NUD17_ARATH1.681e-4560.69Nudix hydrolase 17, mitochondrial OS=Arabidopsis t... [more]
NUD18_ARATH3.746e-4560.69Nudix hydrolase 18, mitochondrial OS=Arabidopsis t... [more]
NUD21_ARATH4.892e-4558.18Nudix hydrolase 21, chloroplastic OS=Arabidopsis t... [more]
NUD16_ARATH3.514e-3548.39Nudix hydrolase 16, mitochondrial OS=Arabidopsis t... [more]
NUD13_ARATH5.251e-3145.00Nudix hydrolase 13, mitochondrial OS=Arabidopsis t... [more]
NUD12_ARATH8.957e-3145.91Nudix hydrolase 12, mitochondrial OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02F01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836036 ID=CF836036; Name=CF836036; organism=Citrus sinensis; type=EST; length=679bp
CTCTCACCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAGTCT
CACTATTAAAAGTTTACTTTTGCTTTCAGTTCGTTCAGACGTTAATTGTT
TTTCATCTGAAAGATTGTCTTTCAGCTCCTTTTGTTTTTTGCTGCTGCGA
ATATTCCGTAACTAGAGAAGAAAACTATGGTGGCTTTGGTAGCTCAAGAA
ACTATTGTATCTCTTGTAACTCCTGAAAATGTTGTGGGCAATTTGGTTTC
TCGCACCGGCAGGCATTTGCAGCGTTACCAAAAAGGCCGTCGCCAAGTTG
TTGGATGCATACCATATAGATATAAATGCGTAAAACAAAGCTTGGATATT
AATGAGGAGGATCTTGAAGTTCTCGTCATCAGTTCACAGAAAGGCAAAGG
GATGTTGTTCCCAAAGGGAGGCTGGGAAATTGATGAATCCATACAAGAAG
CAGCTTTACGAGAAACCATCGAGGAAGCCGGGGTAACTGGCATCGTTGAG
TGTGAATTATTGGGTGAATGGAATTTCAAGAGCAGAGCACACAACACTGA
CTATCAAGGATACATGTTCCCATTACTTGTTCAGGATCAATTAGCGGAGT
GGCCAGAGAAGAATGTGCGAAGCAGAAAATGGATGAGCGTGGCAGAAGCT
AGAAAAGTTTGTCAGCATTGGTGGATGAA
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