CF836055

Overview
NameCF836055
Unique NameCF836055
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836055 vs. ExPASy Swiss-Prot
Match: SMD2_DROME (Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster GN=snRNP2 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.801e-41
Identity = 80/88 (90.91%), Postives = 84/88 (95.45%), Query Frame = 3
Query:  123 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 386
            TGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKK  PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct:   25 TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNP 112          
BLAST of CF836055 vs. ExPASy Swiss-Prot
Match: SMD2_MOUSE (Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus GN=Snrpd2 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.825e-40
Identity = 78/88 (88.64%), Postives = 85/88 (96.59%), Query Frame = 3
Query:  123 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 386
            TGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct:   26 TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113          
BLAST of CF836055 vs. ExPASy Swiss-Prot
Match: SMD2_HUMAN (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens GN=SNRPD2 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.825e-40
Identity = 78/88 (88.64%), Postives = 85/88 (96.59%), Query Frame = 3
Query:  123 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 386
            TGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct:   26 TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113          
BLAST of CF836055 vs. ExPASy Swiss-Prot
Match: SMD2_BOVIN (Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus GN=SNRPD2 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.825e-40
Identity = 78/88 (88.64%), Postives = 85/88 (96.59%), Query Frame = 3
Query:  123 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 386
            TGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct:   26 TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113          
BLAST of CF836055 vs. ExPASy Swiss-Prot
Match: SMD2_DICDI (Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium discoideum GN=snrpd2 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.804e-38
Identity = 75/87 (86.21%), Postives = 82/87 (94.25%), Query Frame = 3
Query:  126 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 386
            GPLS+LM SV NNTQVLIN RNNKKLLGRVRAFDRHCNMVLENV+E+WTE+PKT KGKKKA P+NKDRFISKMFLRGDSVI+VL+NP
Sbjct:   18 GPLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVPKTAKGKKKAKPINKDRFISKMFLRGDSVILVLKNP 104          
BLAST of CF836055 vs. ExPASy Swiss-Prot
Match: SMD2_CAEEL (Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans GN=snr-4 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.221e-37
Identity = 74/87 (85.06%), Postives = 81/87 (93.10%), Query Frame = 3
Query:  126 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 386
            GPLS+L  SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PKTGKGKKKA  V KDRFISKMFLRGDSVI+V++NP
Sbjct:   27 GPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113          
BLAST of CF836055 vs. ExPASy Swiss-Prot
Match: SMD2_SCHPO (Probable small nuclear ribonucleoprotein Sm D2 OS=Schizosaccharomyces pombe GN=smd2 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.228e-29
Identity = 63/87 (72.41%), Postives = 72/87 (82.76%), Query Frame = 3
Query:  126 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 386
            GPLSVL  +VKN+ QVLINCRNNKKLL RV+AFDRH NMVLENV+EMWTE  +T  G KK   +NKDRFISKMFLRGD V++V+R P
Sbjct:   28 GPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTASG-KKGKAINKDRFISKMFLRGDGVVLVVRIP 113          
BLAST of CF836055 vs. ExPASy Swiss-Prot
Match: SMD2_YEAST (Small nuclear ribonucleoprotein Sm D2 OS=Saccharomyces cerevisiae GN=SMD2 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.519e-21
Identity = 48/87 (55.17%), Postives = 66/87 (75.86%), Query Frame = 3
Query:  126 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 386
            GP+S++  ++   T V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE       KK    +N++RFISK+FLRGDSVI+VL+ P
Sbjct:   29 GPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE-------KKGKNVINRERFISKLFLRGDSVIVVLKTP 108          
The following BLAST results are available for this feature:
BLAST of CF836055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SMD2_DROME4.801e-4190.91Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_MOUSE1.825e-4088.64Small nuclear ribonucleoprotein Sm D2 OS=Mus muscu... [more]
SMD2_HUMAN1.825e-4088.64Small nuclear ribonucleoprotein Sm D2 OS=Homo sapi... [more]
SMD2_BOVIN1.825e-4088.64Small nuclear ribonucleoprotein Sm D2 OS=Bos tauru... [more]
SMD2_DICDI3.804e-3886.21Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_CAEEL3.221e-3785.06Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_SCHPO3.228e-2972.41Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_YEAST5.519e-2155.17Small nuclear ribonucleoprotein Sm D2 OS=Saccharom... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02F13_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836055 ID=CF836055; Name=CF836055; organism=Citrus sinensis; type=EST; length=722bp
TTGTCTCGTCCCCTCCGCAGTTAGGTTGTCGTTCAGTCTTGGCTTGAAGA
AGCTAATTGTCAAACATGAGCAGTCGGCCGATGGAGGAAGATAATGTCAA
AAATGAGGAAGAGGAATTCAACACAGGTCCACTTTCTGTTTTGATGATGA
GTGTTAAAAACAATACCCAGGTGCTTATTAACTGTCGGAACAACAAGAAG
CTTCTTGGTCGTGTGAGAGCTTTTGATCGTCACTGCAATATGGTTCTTGA
GAATGTCAGGGAGATGTGGACTGAGTTGCCTAAGACTGGGAAAGGCAAGA
AAAAGGCTCTTCCAGTTAACAAGGATAGATTCATCAGTAAGATGTTTCTC
CGAGGAGATTCTGTGATCATTGTTCTTAGGAATCCCAAGTGAAGTACACA
CCTAGCTTGACAGCCTCAGCAATTTTAACGAAAGATCTATATGGACAATA
CTGTTTGTGATGGGTAAAAAATGAGCCAGCAAGCCTAGATTTGTTTGAAG
GATGTTCGCATGGTATTTGTGCAATTGTGCTGCCAAGTTTGGGAGATTGG
TTGGAGTATCTTAGGTGTCCTGACATAAGGGTGACTTTTTTGGTGTGTTG
TAAATTCAATGGACTAGAGATGTTATGGTGTGTAGCTCTTTACTATTTTC
TACTTCTAATGCTCGTTTACTTTTATTAAAATCTTGATCTGTAATATTGA
GCCATAAGCCTTGTGATTCCCT
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