CF836061

Overview
NameCF836061
Unique NameCF836061
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1147 contig Csv1_Contig1147:1..631. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF836061 vs. ExPASy Swiss-Prot
Match: FRS3_ARATH (Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3 PE=2 SV=2)

HSP 1 Score: 283.493 bits (724), Expect = 6.150e-76
Identity = 142/206 (68.93%), Postives = 160/206 (77.67%), Query Frame = 1 
Query:    7 YNNLCREAIKYSEDGAVAQETYNVAMSSIREGWXXXXXXXXXXXXXPPPGSHVSGTGYDDRKISASPSDSTPLLWPRQDEMTRRFNLNDSGPAIQPVSDLNLPRMAPVSLHRDDGPSDNMVVLPCLKSMTWVMENKNSAPGNRVAVINLKLHDYSKTPSAELEVKFQLSKVTLEPMLRSMAYISDQLSTPANRVAVINLKLQDTET 624
            YN+LCREAIKY+E+GA+  E YN+A+  +REG               PP SH  G G  D K S S +D+TPLLWPRQDEM RRFNLND G   Q VSDLNLPRMAPVSLHRDD   +NMV LPCLKS+TW ME+KN+ PG RVAVINLKLHDY K PSA+++VKFQLS VTLEPMLRSMAYIS+QLS+PANRVAVINLKLQDTET
Sbjct:  600 YNHLCREAIKYAEEGAITAEAYNIALGQLREGGKKVSVVRKRIGRAAPPSSHGGGIGSGD-KTSLSAADTTPLLWPRQDEMIRRFNLNDGGARAQSVSDLNLPRMAPVSLHRDDTAPENMVALPCLKSLTWGMESKNTMPGGRVAVINLKLHDYRKFPSADMDVKFQLSSVTLEPMLRSMAYISEQLSSPANRVAVINLKLQDTET 804
The following BLAST results are available for this feature:
BLAST of CF836061 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FRS3_ARATH6.150e-7668.93Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02F16_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836061 ID=CF836061; Name=CF836061; organism=Citrus sinensis; type=EST; length=631bp
CGTTGGTATAATAACCTATGTCGGGAAGCAATTAAATACTCCGAAGATGG
GGCAGTAGCCCAAGAGACTTATAATGTTGCTATGAGTTCTATTAGAGAAG
GCTGGAAAAAGGTTGCGGTTGTGAAGAAAAATGTTGCCAAAGTTCCACCT
CCTGGTTCACATGTTAGTGGCACTGGTTATGATGACCGGAAGATCTCTGC
ATCACCTTCAGATAGTACTCCTTTGTTATGGCCTCGACAAGATGAAATGA
CAAGACGATTTAATCTTAATGATTCTGGTCCTGCAATCCAACCTGTTTCT
GATTTGAATCTTCCACGCATGGCCCCTGTGTCCCTTCACCGAGATGATGG
TCCTTCTGATAACATGGTTGTACTCCCTTGTCTAAAGTCCATGACCTGGG
TGATGGAGAATAAGAATTCGGCCCCGGGGAATAGAGTAGCTGTGATTAAT
CTGAAGTTGCATGATTATAGCAAGACTCCCTCAGCAGAATTGGAGGTTAA
GTTTCAGCTCTCTAAGGTTACACTGGAACCCATGTTAAGGTCCATGGCAT
ATATAAGTGACCAGCTTTCAACGCCAGCTAACAGGGTTGCAGTCATCAAT
TTGAAGCTTCAAGATACTGAGACAATTTCAG
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