CF836095

Overview
NameCF836095
Unique NameCF836095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2027 contig Csv1_Contig2027:186..933. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836095 vs. ExPASy Swiss-Prot
Match: TM1L2_MOUSE (TOM1-like protein 2 OS=Mus musculus GN=Tom1l2 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.985e-22
Identity = 74/247 (29.96%), Postives = 116/247 (46.96%), Query Frame = 1
Query:   88 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRI-GSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHE-MVKIARKK--PDTHVKEKILILIDTWQEAFGGXXXXXXXXXXXXXELLRAGAVFPQRS-ERSAPVFTP----PQTHPLTSYPQNFRNPE-----HQQXXXXXXXXXXFPTLSLT---------------EIQNARGIMDVLAEMLNALXPNNKEGLXQEVI 741
            V   +++AT   L   DW +N+EICD++N      KD ++ +KKR+ G+RN +  +LALT+LET +KNCG   H+ VA ++ +   +VKI   K  P T V++K+L LI  W +AF               EL R G  FP    +  +P+ TP    P+  P  + P++   P      +             P LS+T               E+   RG   V++EML  + P  ++    E++
Sbjct:   13 VGQCLEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLSGNRNYREVMLALTVLETCVKNCGHRFHLLVANRDFIDSVLVKIISPKNNPPTIVQDKVLALIQAWADAFRS-SPDLTGVVHIYEELKRRGIEFPMADLDALSPIHTPQRSVPEMDPAATIPRSQTQPRTTAGTYSSPPPASYSTLQAPALSVTGPITANSEQIARLRSELDIVRGNTKVMSEMLTEMVPGQEDSSDLELL 258          
BLAST of CF836095 vs. ExPASy Swiss-Prot
Match: TM1L2_HUMAN (TOM1-like protein 2 OS=Homo sapiens GN=TOM1L2 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.123e-22
Identity = 74/247 (29.96%), Postives = 111/247 (44.94%), Query Frame = 1
Query:   88 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRI-GSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHE-MVKIARKK--PDTHVKEKILILIDTWQEAFGGXXXXXXXXXXXXXELLRAGAVFPQRS----------ERSAPVFTPPQTHPLTSYPQNFRNPEHQQXXXXXXXXXXFPTLSLT---------------EIQNARGIMDVLAEMLNALXPNNKEGLXQEVI 741
            V   +++AT   L   DW +N+EICD++N      KD ++ +KKR+ G+RN +  +LALT+LET +KNCG   H+ VA ++ +   +VKI   K  P T V++K+L LI  W +AF               EL R G  FP             +RS P   P  T P +   Q      +             P LS+T               E+   RG   V++EML  + P  ++    E++
Sbjct:   13 VGQCLEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLNGNRNYREVMLALTVLETCVKNCGHRFHILVANRDFIDSVLVKIISPKNNPPTIVQDKVLALIQAWADAFRS-SPDLTGVVHIYEELKRKGVEFPMADLDALSPIHTPQRSVPEVDPAATMPRSQSQQRTSAGSYSSPPPAPYSAPQAPALSVTGPITANSEQIARLRSELDVVRGNTKVMSEMLTEMVPGQEDSSDLELL 258          
BLAST of CF836095 vs. ExPASy Swiss-Prot
Match: TM1L2_XENLA (TOM1-like protein 2 OS=Xenopus laevis GN=tom1l2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.538e-20
Identity = 74/251 (29.48%), Postives = 117/251 (46.61%), Query Frame = 1
Query:   88 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRI-GSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHE-MVKIARKK--PDTHVKEKILILIDTWQEAFGGXXXXXXXXXXXXXELLRAGAVFPQRS-ERSAPVFTP--------PQTHPLTSYPQ---NFRNPEHQQXXXXXXXXXXFPTLSL---------------TEIQNARGIMDVLAEMLNALXPNNKEGLXQEVIVD 747
            V   +++AT   L   DW +N+EICD++N      KD ++ +KKR+ G+RN +  +LALT+LET +KNCG   H+ V  ++ +   +VKI   K  P T V++K+L LI  W +AF               EL R G  FP    +  +P+ TP        P T+  TS  Q   +F N  + +           P  ++               +E+   RG + V++EML  + P  +     E++ D
Sbjct:   13 VGQCIEKATDGSLQSEDWTLNMEICDIINETEEGPKDAMRALKKRLNGNRNYREVMLALTVLETCVKNCGHRFHVQVTHRDFIDGILVKIISPKNNPPTIVQDKVLALIQAWADAFRS-SPDLTGVVHIYEELKRKGIEFPMADLDALSPIHTPQRSVPEVDPATNMHTSQTQKRDSFSNLSNSKSTSTPYTAPGGPPPNVGGPISANSEQIGRLRSELDIVRGNVKVMSEMLTEMTPGQEGASDLELLQD 262          
BLAST of CF836095 vs. ExPASy Swiss-Prot
Match: HGS_RAT (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Rattus norvegicus GN=Hgs PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.115e-19
Identity = 42/109 (38.53%), Postives = 69/109 (63.30%), Query Frame = 1
Query:   97 MVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAF 423
            ++D+ATS +L+  DW   ++ICD++     QAK  V  IKK++  +N  V L AL ++E+++KNCG  VH  VA K  + E+ ++ +++ + +V+ KIL LI  W  AF
Sbjct:   11 LLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKELLKRQVEVNVRNKILYLIQAWAHAF 119          
BLAST of CF836095 vs. ExPASy Swiss-Prot
Match: HGS_MOUSE (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Mus musculus GN=Hgs PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.115e-19
Identity = 42/109 (38.53%), Postives = 69/109 (63.30%), Query Frame = 1
Query:   97 MVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAF 423
            ++D+ATS +L+  DW   ++ICD++     QAK  V  IKK++  +N  V L AL ++E+++KNCG  VH  VA K  + E+ ++ +++ + +V+ KIL LI  W  AF
Sbjct:   11 LLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKELLKRQVEVNVRNKILYLIQAWAHAF 119          
BLAST of CF836095 vs. ExPASy Swiss-Prot
Match: TOM1_CHICK (Target of Myb protein 1 OS=Gallus gallus GN=TOM1 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.456e-19
Identity = 70/243 (28.81%), Postives = 111/243 (45.68%), Query Frame = 1
Query:   88 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRI-GSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVK---IARKKPDTHVKEKILILIDTWQEAFGGXXXXXXXXXXXXXELLRAGAVFPQRS-ERSAPVFTP-----------PQTHPLTSYPQNFRNPEHQQXXXXXXXXXXFPTLSLT---------EIQNARGIMDVLAEMLNALXPNNKEGLXQEVI 741
            V   ++RAT   L G DW++N+EICD++N      KD  + IKKRI G++N    +LALT+LET +KNCG   H+ VA ++ +  ++    + +  P   V +K+L LI +W +AF               +L R G  FP    +  +P+ TP            Q  P  + PQ   +  H               ++ T         E++   G + V++EML  L P+  E    E++
Sbjct:   13 VGQRIERATDGSLRGEDWSLNMEICDIINETEEGPKDAFRAIKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHILVASQDFVESVLVRTILPKNNPPAIVHDKVLTLIQSWADAFRS-SPDLTGVVAVYEDLRRKGLEFPMTDLDMLSPIHTPRRSVYSSNSQSGQNSPAVNSPQQMESILHPVTLPSGRDTSSNVPITPTQEQIKKLRSELEVVNGNVKVMSEMLTELVPSQAETSDLELL 254          
BLAST of CF836095 vs. ExPASy Swiss-Prot
Match: TOM1_MOUSE (Target of Myb protein 1 OS=Mus musculus GN=Tom1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.902e-19
Identity = 70/243 (28.81%), Postives = 113/243 (46.50%), Query Frame = 1
Query:   88 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRI-GSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVK---IARKKPDTHVKEKILILIDTWQEAFGGXXXXXXXXXXXXXELLRAGAVFPQRS-ERSAPVFTPPQT--HPLTSYPQNFRNPEHQQXXXXXXXXXXFPTLSL------------------TEIQNARGIMDVLAEMLNALXPNNKEGLXQEVI 741
            V   +++AT   L   DWA+N+EICD++N      KD  + +KKRI G++N    +LALT+LET +KNCG   H+ VA ++ +  ++    + +  P T V +K+L LI +W +AF               +L R G  FP    +  +P+ TP +T  +  T   QN  +    Q           PT ++                  +E++   G + V++EML  L P   E    E++
Sbjct:   13 VGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDAFRAVKKRIMGNKNFHEVMLALTVLETCVKNCGHRFHVLVANQDFVENVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRS-SPDLTGVVAVYEDLRRKGLEFPMTDLDMLSPIHTPQRTVFNSETPSRQNSVSSNTSQRGDLSQHATPLPTPAVLPGDSPITPTPEQIGKLRSELEMVSGNVRVMSEMLTELVPTQVEPADLELL 254          
BLAST of CF836095 vs. ExPASy Swiss-Prot
Match: HGS_HUMAN (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Homo sapiens GN=HGS PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.902e-19
Identity = 42/109 (38.53%), Postives = 68/109 (62.39%), Query Frame = 1
Query:   97 MVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAF 423
            ++D+ATS +L+  DW   ++ICD++     QAK  V  IKK++  +N  V L AL ++E+++KNCG  VH  VA K  + E+  + +++ + +V+ KIL LI  W  AF
Sbjct:   11 LLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF 119          
BLAST of CF836095 vs. ExPASy Swiss-Prot
Match: HGS_BOVIN (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Bos taurus GN=HGS PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.902e-19
Identity = 42/109 (38.53%), Postives = 68/109 (62.39%), Query Frame = 1
Query:   97 MVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAF 423
            ++D+ATS +L+  DW   ++ICD++     QAK  V  IKK++  +N  V L AL ++E+++KNCG  VH  VA K  + E+  + +++ + +V+ KIL LI  W  AF
Sbjct:   11 LLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVSSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF 119          
BLAST of CF836095 vs. ExPASy Swiss-Prot
Match: TOM1_HUMAN (Target of Myb protein 1 OS=Homo sapiens GN=TOM1 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 7.228e-19
Identity = 68/243 (27.98%), Postives = 112/243 (46.09%), Query Frame = 1
Query:   88 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRI-GSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVK---IARKKPDTHVKEKILILIDTWQEAFGGXXXXXXXXXXXXXELLRAGAVFPQRS-ERSAPVFTPPQT--HPLTSYPQNFRNPEHQQXXXXXXXXXXFPTLSL------------------TEIQNARGIMDVLAEMLNALXPNNKEGLXQEVI 741
            V   +++AT   L   DWA+N+EICD++N      KD ++ +KKRI G++N    +LALT+LET +KNCG   H+ VA ++ +  ++    + +  P T V +K+L LI +W +AF               +L R G  FP    +  +P+ TP +T  +  T   Q+    +  Q           P   +                  +E++   G + V++EML  L P   E    E++
Sbjct:   13 VGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRS-SPDLTGVVTIYEDLRRKGLEFPMTDLDMLSPIHTPQRTVFNSETQSGQDSVGTDSSQQEDSGQHAAPLPAPPILSGDTPIAPTPEQIGKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELL 254          
The following BLAST results are available for this feature:
BLAST of CF836095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
TM1L2_MOUSE6.985e-2229.96TOM1-like protein 2 OS=Mus musculus GN=Tom1l2 PE=1... [more]
TM1L2_HUMAN9.123e-2229.96TOM1-like protein 2 OS=Homo sapiens GN=TOM1L2 PE=1... [more]
TM1L2_XENLA6.538e-2029.48TOM1-like protein 2 OS=Xenopus laevis GN=tom1l2 PE... [more]
HGS_RAT1.115e-1938.53Hepatocyte growth factor-regulated tyrosine kinase... [more]
HGS_MOUSE1.115e-1938.53Hepatocyte growth factor-regulated tyrosine kinase... [more]
TOM1_CHICK1.456e-1928.81Target of Myb protein 1 OS=Gallus gallus GN=TOM1 P... [more]
TOM1_MOUSE1.902e-1928.81Target of Myb protein 1 OS=Mus musculus GN=Tom1 PE... [more]
HGS_HUMAN1.902e-1938.53Hepatocyte growth factor-regulated tyrosine kinase... [more]
HGS_BOVIN1.902e-1938.53Hepatocyte growth factor-regulated tyrosine kinase... [more]
TOM1_HUMAN7.228e-1927.98Target of Myb protein 1 OS=Homo sapiens GN=TOM1 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02G12_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836095 ID=CF836095; Name=CF836095; organism=Citrus sinensis; type=EST; length=748bp
TCGGAGCCGGACTCTAAGTGATCTTCTTGGAGAGGTGTTTGATTTGATTC
CCTTGTTTGGTTGGGAGAGAGTGAGAGAGCAGAGATGGTGAATTCAATGG
TGGATAGAGCCACGAGCGACATGTTGATCGGCCCTGATTGGGCCATGAAC
ATCGAGATCTGTGACATGCTCAATCACGACCCTGGGCAAGCAAAGGATGT
TGTTAAAGGTATTAAAAAGCGTATTGGAAGTAGGAATTCAAAAGTTCAAC
TTCTTGCTTTAACACTGTTGGAGACAATTATAAAGAATTGTGGGGATATT
GTCCATATGCATGTTGCAGAGAAAAATGTTCTTCATGAGATGGTGAAAAT
AGCCAGGAAAAAGCCCGACACTCACGTCAAAGAGAAGATATTAATTCTAA
TAGATACTTGGCAAGAAGCTTTCGGAGGACCTAGGGCAAGATATCCACAG
TACTATGCGGCATACCAAGAGTTATTGCGCGCTGGGGCAGTGTTCCCTCA
GAGGTCTGAGAGGTCTGCGCCTGTTTTCACACCACCTCAAACACATCCCT
TGACTTCTTATCCTCAAAATTTTCGAAATCCTGAGCATCAGCAAGAGGCA
GCTGAAGCTTCTGCAGAGTCTGAGTTCCCAACCTTGAGCTTGACAGAAAT
TCAGAATGCACGTGGTATTATGGATGTCCTTGCAGAAATGCTGAATGCAT
TANATCCAAACAACAAAGAGGGCCTTANGCAGGAGGTTATTGTTGATT
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