CF836096

Overview
NameCF836096
Unique NameCF836096
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length484
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6290 contig Csv1_Contig6290:328..811. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF836096 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.347e-15
Identity = 46/103 (44.66%), Postives = 60/103 (58.25%), Query Frame = -1 
Query:  191 VSTDVNLRFPVKVSVKPCNEEPLWKVDSYDDPL----IVTGGIEGHPGAETLLNWFKIEKAGNFSYGGVYNIVHCPSVCLSCPRRCNKIG-VSSKDGVRRLAL 484
            VSTDVN+ F V +  + C+   +W++D+YD+      + T G++G PG  TL +WFKIEKAG       Y    CPSVC SC   C+ IG  S  DG  RLAL
Sbjct:  100 VSTDVNIEF-VPIRDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGVLG----YKFRFCPSVCDSCTTLCSDIGRHSDDDGQIRLAL 197
[Close]
BLAST of CF836096 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 9.685e-15
Identity = 44/111 (39.64%), Postives = 65/111 (58.56%), Query Frame = -1 
Query:  173 VSTDVNLRFPVKVSVKPCN--EEPLWKVDSYDDP----LIVTGGIEGHPGAETLLNWFKIEKAGNFSYGGVYNIVHCPSVCLSCPRRCNKIGV-SSKDGVRRLALVGDDEP 484
            VSTD+N+ F    +  PC      +W++D YD+      +  GG++G+PG ET+ +WFKIE+   F   G Y +V CP+VC SC  +C  +G+   + G RRLAL   D+P
Sbjct:  107 VSTDLNINFS---AFMPCRWTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEE---FCGSGFYKLVFCPTVCGSCKVKCGDVGIYIDQKGRRRLAL--SDKP 209
The following BLAST results are available for this feature:
BLAST of CF836096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ASP_THECC4.347e-1544.6621 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU9.685e-1539.64Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02G13_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02G13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836096 ID=CF836096; Name=CF836096; organism=Citrus sinensis; type=EST; length=484bp
AATAGAGATAAAAGGTTACTAGCCTGGCCTTTTATTTAGAATGATAAAGC
TAGTTCATTCATTACGCGGCCATTGATATTGCTTCAGCAGCTTCAAAAAA
CCCTGATATTGCGTTAGCAGCTTGAAGTAGCCTTGATCTTTCCTCTGATG
GAAAAAACAGAACATTCAAAGCCGGTTCATCATCACCAACTAGAGCCAGA
CGTCGAACGCCATCCTTAGAAGAAACGCCAATTTTGTTGCAGCGTCTAGG
ACAAGAAAGACAGACACTCGGACAATGGACAATATTGTATACACCACCAT
ATGAAAAATTTCCAGCTTTCTCAATCTTAAACCAATTTAGCAACGTTTCA
GCTCCTGGGTGGCCCTCAATTCCGCCGGTTACAATTAATGGATCGTCATA
GCTATCAACTTTCCACAATGGTTCTTCATTACAGGGCTTAACAGAAACTT
TTACGGGGAATCTCAGGTTGACATCAGTGGATAC
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