CF836135

Overview
NameCF836135
Unique NameCF836135
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length353
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836135 vs. ExPASy Swiss-Prot
Match: PUB7_ARATH (U-box domain-containing protein 7 OS=Arabidopsis thaliana GN=PUB7 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.498e-38
Identity = 84/113 (74.34%), Postives = 92/113 (81.42%), Query Frame = 1
Query:   13 LRRSEYIVPQSIGCQILEIVNELETIAFSLDPSEKQVGDDIIALLQQGRKFNDSHDNDELESFHRAATTLGITSS*AALTERRALKELIDRARVEEHRRKESIVAYLLLLMRK 351
            L+R E IVP SIG QILEIV ELE   F LDPSEK+VGD IIALLQQG+KF++ +DN ELE FHRAAT L ITSS  AL ERRALK+LIDRAR EE +RKESIVAYLL LMRK
Sbjct:  101 LKRVEDIVPSSIGSQILEIVGELENTRFMLDPSEKEVGDQIIALLQQGKKFDNCNDNTELEIFHRAATRLSITSSRVALAERRALKKLIDRARAEEDKRKESIVAYLLHLMRK 213          
BLAST of CF836135 vs. ExPASy Swiss-Prot
Match: PUB6_ARATH (U-box domain-containing protein 6 OS=Arabidopsis thaliana GN=PUB6 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 2.340e-36
Identity = 82/115 (71.30%), Postives = 94/115 (81.74%), Query Frame = 1
Query:    7 ERLRRSEYIVPQSIGCQILEIVNELETIAFSLDPSEKQVGDDIIALLQQGRKFNDSHDNDELESFHRAATTLGITSS*AALTERRALKELIDRARVEEHRRKESIVAYLLLLMRK 351
            + LRR E IVP SIG QIL+IV ELE   F LDPSEK+VGD IIALLQQG+KF++  D+ ELE FH+AAT L ITSS +AL ERRALK++IDRARVEE +RKESIVAYLL LMRK
Sbjct:   99 DSLRRVEDIVPSSIGSQILDIVGELEHTKFLLDPSEKEVGDRIIALLQQGKKFDNGSDSTELEIFHQAATRLSITSSRSALAERRALKKVIDRARVEEDKRKESIVAYLLHLMRK 213          
BLAST of CF836135 vs. ExPASy Swiss-Prot
Match: PUB45_ARATH (U-box domain-containing protein 45 OS=Arabidopsis thaliana GN=PUB45 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.340e-36
Identity = 81/117 (69.23%), Postives = 94/117 (80.34%), Query Frame = 1
Query:    1 LGERLRRSEYIVPQSIGCQILEIVNELETIAFSLDPSEKQVGDDIIALLQQGRKFNDSHDNDELESFHRAATTLGITSS*AALTERRALKELIDRARVEEHRRKESIVAYLLLLMRK 351
            L + LRR E IV QSIG Q+LEI+ ELE   FSLDP+EK++GD II LLQQG  F  S DN+ELE FH+AAT LGITSS AALTERR LK+LI+RAR+E+ +RKESIVAYLL LMRK
Sbjct:   97 LTDSLRRVEDIVQQSIGSQLLEILMELENTEFSLDPAEKEIGDQIIGLLQQGGNFESSSDNNELEVFHQAATRLGITSSRAALTERRCLKKLIERARMEDDKRKESIVAYLLHLMRK 213          
The following BLAST results are available for this feature:
BLAST of CF836135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PUB7_ARATH9.498e-3874.34U-box domain-containing protein 7 OS=Arabidopsis t... [more]
PUB6_ARATH2.340e-3671.30U-box domain-containing protein 6 OS=Arabidopsis t... [more]
PUB45_ARATH2.340e-3669.23U-box domain-containing protein 45 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02H15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02H15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836135 ID=CF836135; Name=CF836135; organism=Citrus sinensis; type=EST; length=353bp
CTTGGTGAGAGGCTTAGGCGATCTGAATATATTGTTCCTCAATCGATTGG
ATGTCAGATTTTGGAGATTGTAAATGAGCTCGAGACAATTGCGTTTTCAC
TTGATCCTTCTGAGAAACAAGTTGGTGATGATATAATTGCATTACTCCAG
CAGGGAAGAAAATTTAACGACTCTCATGACAATGATGAGCTTGAATCATT
TCACCGGGCTGCTACTACACTTGGTATCACTTCCTCCTGAGCAGCTCTTA
CCGAGAGAAGGGCTCTGAAAGAACTTATTGATAGAGCTCGTGTGGAGGAA
CATAGACGGAAAGAATCCATTGTGGCCTATCTTTTACTCCTCATGAGAAA
ATA
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