CF836153

Overview
NameCF836153
Unique NameCF836153
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836153_ssr116 microsatellite CF836153_ssr116:116..130. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4056 contig Csv1_Contig4056:1..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF836153 vs. ExPASy Swiss-Prot
Match: GDIA_RAT (Rab GDP dissociation inhibitor alpha OS=Rattus norvegicus GN=Gdi1 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.116e-47
Identity = 86/163 (52.76%), Postives = 121/163 (74.23%), Query Frame = -1 
Query:  309 KVVGVTSEGETAKCKKVVWDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 797
            KVVGV SEGE A+CK+++ DPSY+P++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  264 KVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of CF836153 vs. ExPASy Swiss-Prot
Match: GDIA_CANFA (Rab GDP dissociation inhibitor alpha OS=Canis familiaris GN=GDI1 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.116e-47
Identity = 86/163 (52.76%), Postives = 121/163 (74.23%), Query Frame = -1 
Query:  309 KVVGVTSEGETAKCKKVVWDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 797
            KVVGV SEGE A+CK+++ DPSY+P++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  264 KVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of CF836153 vs. ExPASy Swiss-Prot
Match: GDIA_BOVIN (Rab GDP dissociation inhibitor alpha OS=Bos taurus GN=GDI1 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.070e-47
Identity = 86/163 (52.76%), Postives = 121/163 (74.23%), Query Frame = -1 
Query:  309 KVVGVTSEGETAKCKKVVWDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 797
            KVVGV SEGE A+CK+++ DPSY+P++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  264 KVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of CF836153 vs. ExPASy Swiss-Prot
Match: GDIA_MOUSE (Rab GDP dissociation inhibitor alpha OS=Mus musculus GN=Gdi1 PE=1 SV=3)

HSP 1 Score: 187.193 bits (474), Expect = 9.066e-47
Identity = 85/163 (52.15%), Postives = 121/163 (74.23%), Query Frame = -1 
Query:  309 KVVGVTSEGETAKCKKVVWDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 797
            KVVGV SEGE A+CK+++ DPSY+P++V+K G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  264 KVVGVKSEGEVARCKQLICDPSYIPDRVQKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of CF836153 vs. ExPASy Swiss-Prot
Match: GDIA_PONPY (Rab GDP dissociation inhibitor alpha OS=Pongo pygmaeus GN=GDI1 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.184e-46
Identity = 85/163 (52.15%), Postives = 120/163 (73.62%), Query Frame = -1 
Query:  309 KVVGVTSEGETAKCKKVVWDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 797
            KVVGV SEGE A+CK+++ DPSY+P++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++      F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  264 KVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of CF836153 vs. ExPASy Swiss-Prot
Match: GDIA_PANTR (Rab GDP dissociation inhibitor alpha OS=Pan troglodytes GN=GDI1 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.184e-46
Identity = 85/163 (52.15%), Postives = 120/163 (73.62%), Query Frame = -1 
Query:  309 KVVGVTSEGETAKCKKVVWDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 797
            KVVGV SEGE A+CK+++ DPSY+P++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++      F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  264 KVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of CF836153 vs. ExPASy Swiss-Prot
Match: GDIA_MACFA (Rab GDP dissociation inhibitor alpha OS=Macaca fascicularis GN=GDI1 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.184e-46
Identity = 85/163 (52.15%), Postives = 120/163 (73.62%), Query Frame = -1 
Query:  309 KVVGVTSEGETAKCKKVVWDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 797
            KVVGV SEGE A+CK+++ DPSY+P++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++      F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  264 KVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of CF836153 vs. ExPASy Swiss-Prot
Match: GDIA_HUMAN (Rab GDP dissociation inhibitor alpha OS=Homo sapiens GN=GDI1 PE=1 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 1.184e-46
Identity = 85/163 (52.15%), Postives = 120/163 (73.62%), Query Frame = -1 
Query:  309 KVVGVTSEGETAKCKKVVWDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 797
            KVVGV SEGE A+CK+++ DPSY+P++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++      F S SYDATTHFE+T  D+ ++Y  + G
Sbjct:  264 KVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
[Close]
BLAST of CF836153 vs. ExPASy Swiss-Prot
Match: GDIB_HUMAN (Rab GDP dissociation inhibitor beta OS=Homo sapiens GN=GDI2 PE=1 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 4.211e-44
Identity = 82/163 (50.31%), Postives = 119/163 (73.01%), Query Frame = -1 
Query:  309 KVVGVTSEGETAKCKKVVWDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 797
            KV+GV SEGE A+CK+++ DPSY+ ++V KVG+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   S++HNVA +GK+IA VST  ET  P+ E++P ++LL P+++ F  I D   P +  +    FIS +YDATTHFE+T  D+ N+Y  +TG
Sbjct:  264 KVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNIYKRMTG 426
[Close]
BLAST of CF836153 vs. ExPASy Swiss-Prot
Match: GDIB_CANFA (Rab GDP dissociation inhibitor beta OS=Canis familiaris GN=GDI2 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.211e-44
Identity = 83/163 (50.92%), Postives = 119/163 (73.01%), Query Frame = -1 
Query:  309 KVVGVTSEGETAKCKKVVWDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 797
            KV+GV SEGE A+CK+++ DPSY+ ++V KVG+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   S +HNVA +GK+IA VST AET  P+ E++P ++LL P+++ F  I D   P +  +    FIS +YDATTHFE+T  D+ N+Y  +TG
Sbjct:  264 KVIGVKSEGEVARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIVSTTAETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNIYKRMTG 426
The following BLAST results are available for this feature:
BLAST of CF836153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
GDIA_RAT3.116e-4752.76Rab GDP dissociation inhibitor alpha OS=Rattus nor... [more]
GDIA_CANFA3.116e-4752.76Rab GDP dissociation inhibitor alpha OS=Canis fami... [more]
GDIA_BOVIN4.070e-4752.76Rab GDP dissociation inhibitor alpha OS=Bos taurus... [more]
GDIA_MOUSE9.066e-4752.15Rab GDP dissociation inhibitor alpha OS=Mus muscul... [more]
GDIA_PONPY1.184e-4652.15Rab GDP dissociation inhibitor alpha OS=Pongo pygm... [more]
GDIA_PANTR1.184e-4652.15Rab GDP dissociation inhibitor alpha OS=Pan troglo... [more]
GDIA_MACFA1.184e-4652.15Rab GDP dissociation inhibitor alpha OS=Macaca fas... [more]
GDIA_HUMAN1.184e-4652.15Rab GDP dissociation inhibitor alpha OS=Homo sapie... [more]
GDIB_HUMAN4.211e-4450.31Rab GDP dissociation inhibitor beta OS=Homo sapien... [more]
GDIB_CANFA4.211e-4450.92Rab GDP dissociation inhibitor beta OS=Canis famil... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02I02_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836153 ID=CF836153; Name=CF836153; organism=Citrus sinensis; type=EST; length=797bp
TTTTTTTTTTTTTTTAGCTGAAAAATTTAAGATATAATTTAAGCCCCTTA
AAGATGCATGTTTGAAATCTACACATTAGTTCCCACGGCGAACAATTAAA
ACAAGATTCCATTACATAATAATAATAATAAAATCACCAACTATGAGAAA
CAGAAACCATGACAAAGTCCAAGTGTCCAACCCCCACATTCTTTCGAGCT
TTATCCCACTGACGGCATTACATGCGCAAACATGAACGGGGAGTTGCAGA
TTCCTCATTCTTCTGCAGCACTGGCAGCACTTAAATCCACACTGAGGTCA
AGAACCTTTCCGGTTATCATGGTATACATGTTCAGTACATCCGTGACAGT
TGACTCAAAGTGTGTTGTGGCATCATAGCTCGTTGAGATAAAGCAATTGT
CCAAAGAAGGTTCATTAACTGGTTCATATCTGTCATATATATCATAGAAT
ATTTCATCGACTGGACCCAAAAGATCAATTCCAGGCTTAAGTTCAGTCTG
TGGATGATCAGTCTCTGCCTCAGTCGATACGAATGCAATGAATTTGCCCT
TTGGAGCAACATTGTGGGAGTAGGAACAACAGAAGAGGTACATGTCTGAT
CTACGACCCAACTGTTTTTGCGGAAGGATAACCTGCACTGAATGGGAATC
ATTGGTGTTTGGGATTGGGTGGCTCATAATAGCGATTGCCCTAGCAACCC
TGCCAACCTTCCTCACCTTGTTGGGCAAATAGGAAGGATCCCAAACAACT
TTCTTGCACTTTGCAGTTTCCCCTTCTGACGTGACACCGACTACTTT
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