CF836154

Overview
NameCF836154
Unique NameCF836154
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12761 contig Csv1_Contig12761:74..828. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836154 vs. ExPASy Swiss-Prot
Match: GDIA_PANTR (Rab GDP dissociation inhibitor alpha OS=Pan troglodytes GN=GDI1 PE=2 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 6.308e-79
Identity = 143/229 (62.45%), Postives = 186/229 (81.22%), Query Frame = 3
Query:   72 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPL 755
            MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  + IDF GHALAL+R D YL++P L+TV R+KLY+ES+AR+ G SPY+YPL
Sbjct:    1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARY-GKSPYLYPL 228          
BLAST of CF836154 vs. ExPASy Swiss-Prot
Match: GDIA_MOUSE (Rab GDP dissociation inhibitor alpha OS=Mus musculus GN=Gdi1 PE=1 SV=3)

HSP 1 Score: 293.893 bits (751), Expect = 6.308e-79
Identity = 142/229 (62.01%), Postives = 186/229 (81.22%), Query Frame = 3
Query:   72 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPL 755
            MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  + IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPL
Sbjct:    1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQILEGPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPL 228          
BLAST of CF836154 vs. ExPASy Swiss-Prot
Match: GDIA_HUMAN (Rab GDP dissociation inhibitor alpha OS=Homo sapiens GN=GDI1 PE=1 SV=2)

HSP 1 Score: 293.893 bits (751), Expect = 6.308e-79
Identity = 143/229 (62.45%), Postives = 186/229 (81.22%), Query Frame = 3
Query:   72 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPL 755
            MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  + IDF GHALAL+R D YL++P L+TV R+KLY+ES+AR+ G SPY+YPL
Sbjct:    1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARY-GKSPYLYPL 228          
BLAST of CF836154 vs. ExPASy Swiss-Prot
Match: GDIA_RAT (Rab GDP dissociation inhibitor alpha OS=Rattus norvegicus GN=Gdi1 PE=1 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 8.239e-79
Identity = 142/229 (62.01%), Postives = 186/229 (81.22%), Query Frame = 3
Query:   72 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPL 755
            MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  + IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPL
Sbjct:    1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPL 228          
BLAST of CF836154 vs. ExPASy Swiss-Prot
Match: GDIA_PONPY (Rab GDP dissociation inhibitor alpha OS=Pongo pygmaeus GN=GDI1 PE=2 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 8.239e-79
Identity = 142/229 (62.01%), Postives = 186/229 (81.22%), Query Frame = 3
Query:   72 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPL 755
            MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  + IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPL
Sbjct:    1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPL 228          
BLAST of CF836154 vs. ExPASy Swiss-Prot
Match: GDIA_MACFA (Rab GDP dissociation inhibitor alpha OS=Macaca fascicularis GN=GDI1 PE=2 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 8.239e-79
Identity = 142/229 (62.01%), Postives = 186/229 (81.22%), Query Frame = 3
Query:   72 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPL 755
            MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  + IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPL
Sbjct:    1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPL 228          
BLAST of CF836154 vs. ExPASy Swiss-Prot
Match: GDIA_BOVIN (Rab GDP dissociation inhibitor alpha OS=Bos taurus GN=GDI1 PE=1 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 8.239e-79
Identity = 142/229 (62.01%), Postives = 186/229 (81.22%), Query Frame = 3
Query:   72 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPL 755
            MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  + IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPL
Sbjct:    1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPL 228          
BLAST of CF836154 vs. ExPASy Swiss-Prot
Match: GDIA_CANFA (Rab GDP dissociation inhibitor alpha OS=Canis familiaris GN=GDI1 PE=2 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 1.405e-78
Identity = 141/229 (61.57%), Postives = 186/229 (81.22%), Query Frame = 3
Query:   72 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPL 755
            MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSF+Y  GK++KVP+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  + IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPL
Sbjct:    1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPEAMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFIYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPL 228          
BLAST of CF836154 vs. ExPASy Swiss-Prot
Match: GDIB_BOVIN (Rab GDP dissociation inhibitor beta OS=Bos taurus GN=GDI2 PE=2 SV=3)

HSP 1 Score: 288.886 bits (738), Expect = 2.029e-77
Identity = 138/229 (60.26%), Postives = 184/229 (80.35%), Query Frame = 3
Query:   72 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPL 755
            M+EEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+  ++ L+KRF+    PPA +G  RD+NVD+IPKF++ANG LV++L+ T+VT+YL FK  +GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF +YV ++DENDP+T EG+D  + + RE+  K+ L  + IDF GHALAL+R D YL++P  +T+ R+KLY+ES+AR+ G SPY+YPL
Sbjct:    1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPGAPPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGIDPKKTSMREVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARY-GKSPYLYPL 228          
BLAST of CF836154 vs. ExPASy Swiss-Prot
Match: GDIB_PIG (Rab GDP dissociation inhibitor beta OS=Sus scrofa GN=GDI2 PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 4.521e-77
Identity = 138/229 (60.26%), Postives = 182/229 (79.48%), Query Frame = 3
Query:   72 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPL 755
            M+EEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+  ++ L+KRF     PPA +G  RD+NVD+IPKF++ANG LV++L+ T+VT+YL FK  +GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF +YV ++DENDP+T EG+D  +   RE+  K+ L  + IDF GHALAL+R D YL++P  +T+ R+KLY+ES+AR+ G SPY+YPL
Sbjct:    1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFNIPGAPPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARY-GKSPYLYPL 228          
The following BLAST results are available for this feature:
BLAST of CF836154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
GDIA_PANTR6.308e-7962.45Rab GDP dissociation inhibitor alpha OS=Pan troglo... [more]
GDIA_MOUSE6.308e-7962.01Rab GDP dissociation inhibitor alpha OS=Mus muscul... [more]
GDIA_HUMAN6.308e-7962.45Rab GDP dissociation inhibitor alpha OS=Homo sapie... [more]
GDIA_RAT8.239e-7962.01Rab GDP dissociation inhibitor alpha OS=Rattus nor... [more]
GDIA_PONPY8.239e-7962.01Rab GDP dissociation inhibitor alpha OS=Pongo pygm... [more]
GDIA_MACFA8.239e-7962.01Rab GDP dissociation inhibitor alpha OS=Macaca fas... [more]
GDIA_BOVIN8.239e-7962.01Rab GDP dissociation inhibitor alpha OS=Bos taurus... [more]
GDIA_CANFA1.405e-7861.57Rab GDP dissociation inhibitor alpha OS=Canis fami... [more]
GDIB_BOVIN2.029e-7760.26Rab GDP dissociation inhibitor beta OS=Bos taurus ... [more]
GDIB_PIG4.521e-7760.26Rab GDP dissociation inhibitor beta OS=Sus scrofa ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02I02_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836154 ID=CF836154; Name=CF836154; organism=Citrus sinensis; type=EST; length=755bp
AGGCTTCACTTTGACCTAACCCACAAAACCCTCTGAATCAGAAATCAAAA
ATCAAAAATCAAATCATCAACATGGATGAAGAGTATGATGTCATCGTCTT
GGGAACCGGTCTCAAGGAATGCATCCTCAGTGGTCTCCTCTCTGTTGATG
GCCTCAAGGTCCTGCACATGGACAGGAATGATTATTATGGAGGAGAGTCA
TCATCGCTCAATCTCATTCAGCTCTGGAAGAGATTTAGGGGAAATGAACA
ACCTCCTGCTCACTTGGGCTCTAGTAGGGATTATAATGTTGACATGATCC
CGAAGTTTATAATTGCAAATGGAGCTCTTGTTCGTGTCCTCATTCATACT
GATGTTACAAAGTATCTGTACTTCAAAGCTGTGGATGGCAGCTTCGTCTA
TAATAAAGGAAAGGTCCACAAGGTGCCAGCAACTGATATGGAAGCGCTCA
AATCTCCACTCATGGGTATTTTTGAGAAGCGCCGTGCACGCAAGTTTTTC
ATTTATGTTCAAGATTATGATGAAAATGATCCCAAAACACACGAGGGAAT
GGACTTGACCAGGGTGACCACTAGAGAGCTGATTGCGAAGTATGGTCTTG
ATGACAACACTATTGACTTCATTGGTCATGCATTGGCACTTCATAGAGAT
GATCGTTACTTAAACGAACCTGCTCTTGATACAGTGAAGAGAATGAAGTT
ATACGCAGAGTCTATTGCACGATTTCAAGGAGGATCACCATACATTTACC
CTCTG
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