CF836202

Overview
NameCF836202
Unique NameCF836202
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length402
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836202 vs. ExPASy Swiss-Prot
Match: RL291_ARATH (60S ribosomal protein L29-1 OS=Arabidopsis thaliana GN=RPL29A PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.209e-23
Identity = 48/60 (80.00%), Postives = 54/60 (90.00%), Query Frame = -2
Query:  180 MAKSKNHTAHNQFYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKQGGESAAEE 359
            MAKSKNHTAHNQ  KAHKNGIKKP++HRHT T+GMDPKFLRNQRYARKHN + GE+A+ E
Sbjct:    1 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKAGENASAE 60          
BLAST of CF836202 vs. ExPASy Swiss-Prot
Match: RL292_ARATH (60S ribosomal protein L29-2 OS=Arabidopsis thaliana GN=RPL29B PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 3.768e-23
Identity = 48/60 (80.00%), Postives = 53/60 (88.33%), Query Frame = -2
Query:  180 MAKSKNHTAHNQFYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKQGGESAAEE 359
            MAKSKNHTAHNQ  KAHKNGIKKP++HRHT T+GMDPKFLRNQRYARKHN + GE+A  E
Sbjct:    1 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKSGENAGVE 60          
BLAST of CF836202 vs. ExPASy Swiss-Prot
Match: RL29_RAT (60S ribosomal protein L29 OS=Rattus norvegicus GN=Rpl29 PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 1.174e-16
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = -2
Query:  201 MAKSKNHTAHNQFYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKQG 359
            MAKSKNHT HNQ  K H+NGIKKP+  R+ S KG+DPKFLRN R+A+KHNK+G
Sbjct:    1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53          
BLAST of CF836202 vs. ExPASy Swiss-Prot
Match: RL29_PIG (60S ribosomal protein L29 OS=Sus scrofa GN=RPL29 PE=2 SV=4)

HSP 1 Score: 85.1149 bits (209), Expect = 1.174e-16
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = -2
Query:  201 MAKSKNHTAHNQFYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKQG 359
            MAKSKNHT HNQ  K H+NGIKKP+  R+ S KG+DPKFLRN R+A+KHNK+G
Sbjct:    1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53          
BLAST of CF836202 vs. ExPASy Swiss-Prot
Match: RL29_MOUSE (60S ribosomal protein L29 OS=Mus musculus GN=Rpl29 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.174e-16
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = -2
Query:  201 MAKSKNHTAHNQFYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKQG 359
            MAKSKNHT HNQ  K H+NGIKKP+  R+ S KG+DPKFLRN R+A+KHNK+G
Sbjct:    1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53          
BLAST of CF836202 vs. ExPASy Swiss-Prot
Match: RL29_MACFA (60S ribosomal protein L29 OS=Macaca fascicularis GN=RPL29 PE=2 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 1.174e-16
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = -2
Query:  201 MAKSKNHTAHNQFYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKQG 359
            MAKSKNHT HNQ  K H+NGIKKP+  R+ S KG+DPKFLRN R+A+KHNK+G
Sbjct:    1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53          
BLAST of CF836202 vs. ExPASy Swiss-Prot
Match: RL29_HUMAN (60S ribosomal protein L29 OS=Homo sapiens GN=RPL29 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.174e-16
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = -2
Query:  201 MAKSKNHTAHNQFYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKQG 359
            MAKSKNHT HNQ  K H+NGIKKP+  R+ S KG+DPKFLRN R+A+KHNK+G
Sbjct:    1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53          
BLAST of CF836202 vs. ExPASy Swiss-Prot
Match: RL29_BOVIN (60S ribosomal protein L29 OS=Bos taurus GN=RPL29 PE=2 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 1.174e-16
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = -2
Query:  201 MAKSKNHTAHNQFYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKQG 359
            MAKSKNHT HNQ  K H+NGIKKP+  R+ S KG+DPKFLRN R+A+KHNK+G
Sbjct:    1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG 53          
BLAST of CF836202 vs. ExPASy Swiss-Prot
Match: RL29_DROME (60S ribosomal protein L29 OS=Drosophila melanogaster GN=RpL29 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.099e-14
Identity = 39/56 (69.64%), Postives = 42/56 (75.00%), Query Frame = -2
Query:  192 MAKSKNHTAHNQFYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKQGGES 359
            MAKSKNHT HNQ  KAH+NGIK+P + RH ST GMD KFL NQRYARK N    ES
Sbjct:    1 MAKSKNHTNHNQNKKAHRNGIKRPLRKRHESTLGMDVKFLINQRYARKGNLSREES 56          
BLAST of CF836202 vs. ExPASy Swiss-Prot
Match: RL29_YEAST (60S ribosomal protein L29 OS=Saccharomyces cerevisiae GN=RPL29 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 4.617e-13
Identity = 32/46 (69.57%), Postives = 39/46 (84.78%), Query Frame = -2
Query:  222 MAKSKNHTAHNQFYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYA 359
            MAKSKNHTAHNQ  KAH+NGIKKPK +++ S KG+DPKF RN ++A
Sbjct:    1 MAKSKNHTAHNQTRKAHRNGIKKPKTYKYPSLKGVDPKFRRNHKHA 46          
The following BLAST results are available for this feature:
BLAST of CF836202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RL291_ARATH2.209e-2380.0060S ribosomal protein L29-1 OS=Arabidopsis thalian... [more]
RL292_ARATH3.768e-2380.0060S ribosomal protein L29-2 OS=Arabidopsis thalian... [more]
RL29_RAT1.174e-1669.8160S ribosomal protein L29 OS=Rattus norvegicus GN=... [more]
RL29_PIG1.174e-1669.8160S ribosomal protein L29 OS=Sus scrofa GN=RPL29 P... [more]
RL29_MOUSE1.174e-1669.8160S ribosomal protein L29 OS=Mus musculus GN=Rpl29... [more]
RL29_MACFA1.174e-1669.8160S ribosomal protein L29 OS=Macaca fascicularis G... [more]
RL29_HUMAN1.174e-1669.8160S ribosomal protein L29 OS=Homo sapiens GN=RPL29... [more]
RL29_BOVIN1.174e-1669.8160S ribosomal protein L29 OS=Bos taurus GN=RPL29 P... [more]
RL29_DROME1.099e-1469.6460S ribosomal protein L29 OS=Drosophila melanogast... [more]
RL29_YEAST4.617e-1369.5760S ribosomal protein L29 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02J10_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02J10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836202 ID=CF836202; Name=CF836202; organism=Citrus sinensis; type=EST; length=402bp
TTTTTTTTTTTTTTTTTAGTAAAAAACATAGCTTAACGACTCTTCAAATA
CTTGAAATTGAAATGAAACCCACTACAGTGCCATCAAGTCACTACAATAA
CAAAAACAAAACAGATATCCATTCAAGGGGTTAAAAAAATCTTAACAACT
AAGTAATTAAAACCCCATAACAGCATCTACTCCTCAGCAGCAGATTCACC
TCCCTGCTTGTTATGCTTCCTTGCATACCTCTGGTTCCTCAGGAACTTTG
GGTCCATCCCTTTGGTGGAAGTGTGGCGGTGCTTCTTAGGTTTCTTGATA
CCGTTCTTGTGAGCCTTGTAAAACTGGTTATGCGCTGTGTGATTCTTTGA
CTTTGCCATCTCGTTTTCAGGAAAAGACCCTGCTCGCGGCTGTGCTAAAA
AT
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