CF836217

Overview
NameCF836217
Unique NameCF836217
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12237 contig Csv1_Contig12237:178..963. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836217 vs. ExPASy Swiss-Prot
Match: NDK3_ARATH (Nucleoside diphosphate kinase III, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDPK3 PE=1 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 1.484e-94
Identity = 167/206 (81.07%), Postives = 189/206 (91.75%), Query Frame = -3
Query:  170 RAVSAAAAVTFSGKLLYLVSSFGRA-GSSTASRSWLSGAIAIPAAAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVY 784
            RA+ AAAAV+ SGK+    S+F R+ GS  AS+SW++G +A+PAAAY +Q+QEV AAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLV IK++VPSK+FAQKHYHDLKERPFFNGLC+FLSSGPVIAMVWEG+GVI YGRKLIGATDPQKSEPGTIRGDLAV VGRNIIHGSDGPETAKDEI LWFKP++LV+YTSN+EKW+Y
Sbjct:   30 RAIGAAAAVSASGKIPLYASNFARSSGSGVASKSWITGLLALPAAAYMIQDQEVLAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVIVPSKDFAQKHYHDLKERPFFNGLCDFLSSGPVIAMVWEGDGVIRYGRKLIGATDPQKSEPGTIRGDLAVTVGRNIIHGSDGPETAKDEISLWFKPQELVSYTSNSEKWLY 235          
BLAST of CF836217 vs. ExPASy Swiss-Prot
Match: NDK4_ARATH (Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDK4 PE=1 SV=2)

HSP 1 Score: 340.887 bits (873), Expect = 4.775e-93
Identity = 163/205 (79.51%), Postives = 184/205 (89.76%), Query Frame = -3
Query:  170 RAVSAAAAVTFSGKLLYLVSSFGRAGSSTASRSWLSGAIAIPAAAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVY 784
            RA+ AA+ V  +GK+    S+FG++GS   S SW++G +A+PAAA+ LQ+QE  AAEMERTFIAIKPDGVQRGLISEII+RFERKG+KLV IK++VPSK FAQKHYHDLKERPFFNGLC FLSSGPV+AMVWEGEGVI YGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEI LWFKPE+LV+YTSNAEKW+Y
Sbjct:   30 RAIGAASVVHATGKVPQYASNFGKSGSGFVSNSWITGLLALPAAAFMLQDQEALAAEMERTFIAIKPDGVQRGLISEIITRFERKGYKLVGIKVMVPSKGFAQKHYHDLKERPFFNGLCNFLSSGPVVAMVWEGEGVIRYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEISLWFKPEELVSYTSNAEKWIY 234          
BLAST of CF836217 vs. ExPASy Swiss-Prot
Match: NDK4_SPIOL (Nucleoside diphosphate kinase 4, chloroplastic OS=Spinacia oleracea GN=NDK4 PE=1 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 2.006e-91
Identity = 165/205 (80.49%), Postives = 181/205 (88.29%), Query Frame = -3
Query:  170 RAVSAAAAVTFSGKLLYLVSSFGRAGSSTASRSWLSGAIAIPAAAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVY 784
            R V+A AAV+   K  YL S     G + AS +W+S A+AIPAAAY LQ+QE  AAE ERTFIAIKPDGVQRGLISEI++RFERKGFKLVAIK+V+PSK+FAQKHYHDL ERPFFNGLC+FLSSGPV+AMVWEGEGVI YGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPE+LVNYT NAEKW+Y
Sbjct:   32 RTVAATAAVSLRVKAPYLASF----GGANASGTWMSTALAIPAAAYLLQDQEACAAEFERTFIAIKPDGVQRGLISEIVARFERKGFKLVAIKVVIPSKDFAQKHYHDLSERPFFNGLCDFLSSGPVVAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELVNYTHNAEKWIY 232          
BLAST of CF836217 vs. ExPASy Swiss-Prot
Match: NDK3_SPIOL (Nucleoside diphosphate kinase 3 OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 3.934e-71
Identity = 127/150 (84.67%), Postives = 139/150 (92.67%), Query Frame = -3
Query:  170 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVY 619
            AE ERTFIAIKPDGVQRGLISEI++RFERKGF LVAIK+V+PS+ FAQKHY DLK++PF+ GL  + SSGPV+AMVWEGEGVI YGRKLIGATDPQKSEPGTIRGDLAVV GRNIIHGSDGPETAKDEIKLWFKPE+LVNYT NAEKW+Y
Sbjct:    1 AEFERTFIAIKPDGVQRGLISEIVARFERKGFSLVAIKVVIPSRPFAQKHYADLKDKPFYVGLVAYWSSGPVVAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVNGRNIIHGSDGPETAKDEIKLWFKPEELVNYTHNAEKWIY 150          
BLAST of CF836217 vs. ExPASy Swiss-Prot
Match: NDK_PROMA (Nucleoside diphosphate kinase OS=Prochlorococcus marinus GN=ndk PE=3 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 1.660e-53
Identity = 98/149 (65.77%), Postives = 119/149 (79.87%), Query Frame = -3
Query:  167 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 613
            +ERTF+AIKPDGVQRGL+ EI+ RFERKGFKLV +K ++PSKE A+KHY   KERPFF GL  F++SGPV+AMVWEG+GVI   RKLIGAT P ++EPGTIRGDL + +GRN+IHGSDGPETA  EI LWF   +L N+  + +KW  E
Sbjct:    3 VERTFLAIKPDGVQRGLVGEILGRFERKGFKLVGLKQLIPSKELAEKHYGVHKERPFFTGLVGFITSGPVVAMVWEGDGVILSARKLIGATKPLEAEPGTIRGDLGINIGRNVIHGSDGPETASFEIDLWFNSSELNNWNPSDQKWRVE 151          
BLAST of CF836217 vs. ExPASy Swiss-Prot
Match: NDK_PROM3 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9303) GN=ndk PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.660e-53
Identity = 98/150 (65.33%), Postives = 122/150 (81.33%), Query Frame = -3
Query:  164 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYES 613
            +ERTF+AIKPDGVQRGL+ EI+ RFERKGFKLV +K + PS+E A +HY   +ERPFF GL +F++SGPV+AMVWEG+GVI   RKLIGAT P ++EPGTIRGDLAV +GRN+IHGSDGP+TA+ EI LWF PE+L  +T + + W  ES
Sbjct:    3 VERTFVAIKPDGVQRGLVGEILGRFERKGFKLVGLKQLAPSRELAGEHYGVHRERPFFAGLVDFITSGPVVAMVWEGDGVIASARKLIGATKPLEAEPGTIRGDLAVNIGRNVIHGSDGPDTAQFEINLWFSPEELNAWTPSDQSWRVES 152          
BLAST of CF836217 vs. ExPASy Swiss-Prot
Match: NDK_SYNS3 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain CC9311) GN=ndk PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.831e-53
Identity = 96/148 (64.86%), Postives = 121/148 (81.76%), Query Frame = -3
Query:  167 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 610
            ER+FIAIKPDGVQRGL+ EI+ RFERKGFKLV +K + PS+E A++HY   KERPFF GL +F++SGPV+AMVWEG+GVIT  RK+IGAT P ++EPGTIRGDLA+ +GRN+IHGSD PETA+ EI LWF P +L ++T + + W  E
Sbjct:    4 ERSFIAIKPDGVQRGLVGEILGRFERKGFKLVGLKQLTPSRELAEQHYGVHKERPFFGGLVDFITSGPVVAMVWEGDGVITSARKMIGATKPLEAEPGTIRGDLAINIGRNVIHGSDAPETAEFEIGLWFNPSELSDWTPSDQTWRVE 151          
BLAST of CF836217 vs. ExPASy Swiss-Prot
Match: NDK_PROMS (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain AS9601) GN=ndk PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.309e-53
Identity = 99/149 (66.44%), Postives = 119/149 (79.87%), Query Frame = -3
Query:  164 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYES 610
            ERTFIAIKPDGVQRG +SEI+ RFE+KGFKLV +K ++PSKE AQ HY   +ERPFF  L +F+SSGPV+AMVWEGEGVI   RKLIGAT P ++EPGTIRGDLA+ +GRNIIHGSDG +TAK EI LWF  E+L  + ++  KW  E+
Sbjct:    4 ERTFIAIKPDGVQRGYVSEILGRFEKKGFKLVGLKQLIPSKELAQNHYGVHRERPFFGDLVDFISSGPVVAMVWEGEGVILSARKLIGATKPLEAEPGTIRGDLAIDIGRNIIHGSDGEDTAKFEINLWFNEEELCEWETSDSKWRSEN 152          
BLAST of CF836217 vs. ExPASy Swiss-Prot
Match: NDK_PROMM (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9313) GN=ndk PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.309e-53
Identity = 99/150 (66.00%), Postives = 120/150 (80.00%), Query Frame = -3
Query:  164 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYES 613
            MERTF+AIKPDGVQRGL+ EI+ RFERKGFKLV +K V PS++ A +HY   +ERPFF GL +F++SGPVIAMVWEG+GVI   RKLIGAT P  +EPGTIRGDLAV +GRN+IHGSDGP+TA+ EI LWF  E+L  +T + + W  ES
Sbjct:    3 MERTFVAIKPDGVQRGLVGEILGRFERKGFKLVGLKQVTPSRDLAGEHYGVHRERPFFAGLVDFITSGPVIAMVWEGDGVIASARKLIGATKPLDAEPGTIRGDLAVNIGRNVIHGSDGPDTAQFEINLWFSAEELNAWTPSDQSWRIES 152          
BLAST of CF836217 vs. ExPASy Swiss-Prot
Match: NDK_PROMT (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain NATL2A) GN=ndk PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.406e-52
Identity = 98/149 (65.77%), Postives = 121/149 (81.21%), Query Frame = -3
Query:  167 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 613
            +ERTF+AIKPDGVQRGLI+EI+ RFE KGFKLV +K + PSKE A+KHY   K+RPFF+GL +F++SGPVIAMVWEGEGVI   RKLIGAT P ++EPGTIRGDLAV +GRN+IHGSDG +TA  EI LWF+  +LV++  + + W  E
Sbjct:    3 LERTFVAIKPDGVQRGLIAEILGRFETKGFKLVGLKQLTPSKELAEKHYGVHKDRPFFSGLVDFITSGPVIAMVWEGEGVIASARKLIGATKPLEAEPGTIRGDLAVNIGRNVIHGSDGSDTAVFEINLWFQENELVDWNPSDQAWRVE 151          
The following BLAST results are available for this feature:
BLAST of CF836217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK3_ARATH1.484e-9481.07Nucleoside diphosphate kinase III, chloroplastic/m... [more]
NDK4_ARATH4.775e-9379.51Nucleoside diphosphate kinase IV, chloroplastic/mi... [more]
NDK4_SPIOL2.006e-9180.49Nucleoside diphosphate kinase 4, chloroplastic OS=... [more]
NDK3_SPIOL3.934e-7184.67Nucleoside diphosphate kinase 3 OS=Spinacia olerac... [more]
NDK_PROMA1.660e-5365.77Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROM31.660e-5365.33Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_SYNS34.831e-5364.86Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_PROMS6.309e-5366.44Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROMM6.309e-5366.00Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROMT1.406e-5265.77Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02J19_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02J19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836217 ID=CF836217; Name=CF836217; organism=Citrus sinensis; type=EST; length=786bp
TTTTTGAGCAATTATTGCCGAAATTAATTTTGGATCGTAACAAAGTTGCC
TTTAAAGTCATCTCAACAGAAACAATTTTATTCCACCAACTTTTGCTTCT
AATCCCACTATTCATGTGGGACCTAAGTTTCTAATAAAAGTAAGAGAAAA
ATTGTAATCACTTGGATTCATAGACCCACTTCTCTGCATTGCTTGTGTAA
TTAACCAAGTCTTCGGGTTTGAACCACAATTTAATCTCATCCTTGGCGGT
CTCGGGGCCATCACTTCCATGAATGATGTTTCTTCCAACAACAACAGCTA
GATCGCCTCTGATTGTTCCAGGTTCTGATTTCTGAGGATCTGTGGCTCCA
ATGAGTTTGCGACCATACGTAATAACTCCCTCTCCTTCCCATACCATGGC
AATGACTGGACCAGAGCTAAGGAACTCGCACAGGCCATTAAAGAAGGGTC
TTTCCTTCAGATCATGATAATGTTTTTGTGCAAACTCTTTTGATGGAACT
ACTATCTTAATGGCCACAAGCTTAAAGCCTTTGCGCTCAAAGCGAGAGAT
GATTTCTGAAATCAGTCCTCTTTGCACCCCATCTGGCTTGATGGCAATGA
AAGTGCGTTCCATCTCTGCAGCATGTACTTCCTGCTCCTGGAGCGTGTAA
GCTGCAGCAGGAATTGCAATGGCTCCCGAGAGCCATGATCGAGATGCAGT
TGAGGAACCAGCCCTCCCAAAACTTGAAACAAGATAAAGCAACTTCCCAC
TGAATGTAACTGCCGCTGCAGCAGATACAGCTCGCC
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