CF836233

Overview
NameCF836233
Unique NameCF836233
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7873 contig Csv1_Contig7873:115..751. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836233 vs. ExPASy Swiss-Prot
Match: UREG_SCHPO (Uncharacterized urease accessory protein ureG-like OS=Schizosaccharomyces pombe GN=SPCPB16A4.05c PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 4.654e-71
Identity = 133/210 (63.33%), Postives = 161/210 (76.67%), Query Frame = 1
Query:   55 GRVYHSHDGLAP---------------HSHEPIYSPG-YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGAD 636
            G  +HSHD  +                HSH+ + +PG Y  R  P    R+F+ RAFT+G+GGPVG+GKTAL+L LC+ L +KYS+  VTNDIFT+ED EFL+RN ALPEERIRA+ETGGCPHAAIRED+S NL  LEEL + F  +LLL ESGGDNLAAN+SR+LAD+IIY+IDVSGGDKIPRKGGPGIT++DLL+INKTDLA  +GAD
Sbjct:   31 GHDHHSHDSSSNSSSEAARLQFIQEHGHSHDAMETPGSYLKRELPQFNHRDFSRRAFTIGVGGPVGSGKTALLLQLCRLLGEKYSIGVVTNDIFTREDQEFLIRNKALPEERIRAIETGGCPHAAIREDVSGNLVALEELQSEFNTELLLVESGGDNLAANYSRDLADFIIYVIDVSGGDKIPRKGGPGITESDLLIINKTDLAKLVGAD 240          
BLAST of CF836233 vs. ExPASy Swiss-Prot
Match: UREG_ANADF (Urease accessory protein ureG OS=Anaeromyxobacter sp. (strain Fw109-5) GN=ureG PE=3 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 2.554e-69
Identity = 128/188 (68.09%), Postives = 149/188 (79.26%), Query Frame = 1
Query:   73 HDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGAD 636
            HD      H+    PG F  R  P    +   RAFTVG+GGPVG+GKTAL+LALC+ LRD  SL  VTNDIFT+ED EFL+RN ALP ERIRAVETGGCPHAAIRED++ NL  LEEL+   + ++L CESGGDNLAA+FSRELADY IY+IDV+GGDK+PRKGGPGITQADLLV+NKTDLA+A+GAD
Sbjct:    2 HDHSLHSGHDHGLGPGSFHDRGAPHARGDLRRRAFTVGVGGPVGSGKTALVLALCRALRDSRSLGVVTNDIFTREDAEFLVRNDALPAERIRAVETGGCPHAAIREDVTANLLALEELTEAHRPEILFCESGGDNLAAHFSRELADYTIYVIDVAGGDKVPRKGGPGITQADLLVVNKTDLATAVGAD 189          
BLAST of CF836233 vs. ExPASy Swiss-Prot
Match: UREG_SORC5 (Urease accessory protein ureG OS=Sorangium cellulosum (strain So ce56) GN=ureG PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.073e-67
Identity = 134/211 (63.51%), Postives = 156/211 (73.93%), Query Frame = 1
Query:    4 HEKNHGDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGAD 636
            HE  HG     +   +     H+H+    H+HE    PG FS R  P   R+F+ RAFTVGIGGPVG+GKTAL+LALC+ LRD+  L  VTNDIFT+ED EFL RN ALP ERIRAVETGGCPHAAIREDIS NL  L++L +     LL+ ESGGDNLAA +SREL DY IY+IDV+GGDK+PRKGGPGITQ+DLLVINKTDLA  +GAD
Sbjct:   46 HEHAHGHEHGHAHAHAHA---HAHEHAHGHTHEHWAHPGLFSERDAP-KDRDFSARAFTVGIGGPVGSGKTALVLALCRALRDRMPLGVVTNDIFTQEDAEFLHRNKALPPERIRAVETGGCPHAAIREDISHNLVALDDLMDHVAPALLIVESGGDNLAAQYSRELVDYTIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLAPHVGAD 252          
BLAST of CF836233 vs. ExPASy Swiss-Prot
Match: UREG_CYTH3 (Urease accessory protein ureG OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=ureG PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.315e-62
Identity = 121/176 (68.75%), Postives = 139/176 (78.98%), Query Frame = 1
Query:  112 SPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGAD 636
            SPG+F  R      RNF +RAFTVGIGGPVGTGKTA ++ +CK LRDK ++A VTNDIFT ED EFL+RN AL ++RI  VETGGCPHAAIRED+S N+  LEEL   F   +LL  ESGGDNLAA+FS+EL DY +Y+IDVSGGDKIPRKGGPGITQADLLVINK DLA  + AD
Sbjct:   15 SPGHFHHRELIHEKRNFKKRAFTVGIGGPVGTGKTAWLMQICKALRDKMNIAVVTNDIFTSEDAEFLIRNEALSKDRIIGVETGGCPHAAIREDVSQNMYALEELMKRFPDVELLFVESGGDNLAAHFSKELVDYSVYVIDVSGGDKIPRKGGPGITQADLLVINKIDLAHLVNAD 190          
BLAST of CF836233 vs. ExPASy Swiss-Prot
Match: UREG1_METRJ (Urease accessory protein ureG 1 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=ureG1 PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.580e-55
Identity = 106/153 (69.28%), Postives = 123/153 (80.39%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGAD 636
            VGIGGPVG+GKTALM  LCK  RD+Y + A+TNDI+TKED   L   GALPEERI  VETGGCPH AIRED SINL  + E+S  F K DL+L ESGGDNLAA FS ELAD  +Y+IDV+GG+KIPRKGGPGIT++DLL++NKTDLA  +GAD
Sbjct:   10 VGIGGPVGSGKTALMEQLCKRFRDRYEICAITNDIYTKEDARILTVAGALPEERILGVETGGCPHTAIREDASINLAAVAEMSRRFPKLDLVLIESGGDNLAATFSPELADITLYVIDVAGGEKIPRKGGPGITRSDLLIVNKTDLAPLVGAD 162          
BLAST of CF836233 vs. ExPASy Swiss-Prot
Match: UREG_METNO (Urease accessory protein ureG OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=ureG PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 6.106e-55
Identity = 108/153 (70.59%), Postives = 122/153 (79.74%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKA-DLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGAD 636
            VGIGGPVG+GKTALM  LCK LR +Y L A+TNDI+TKED   L   GALPEERI  VETGGCPH AIRED SINL  + E+   F A DL+L ESGGDNLAA FS ELAD  +Y+IDV+GG+KIPRKGGPGIT++DLLVINKTDLA  +GAD
Sbjct:   11 VGIGGPVGSGKTALMEGLCKALRARYDLCAITNDIYTKEDARLLTVAGALPEERIMGVETGGCPHTAIREDASINLAAVAEMRRRFPALDLILIESGGDNLAATFSPELADLTLYVIDVAGGEKIPRKGGPGITRSDLLVINKTDLAPLVGAD 163          
BLAST of CF836233 vs. ExPASy Swiss-Prot
Match: UREG_METS4 (Urease accessory protein ureG OS=Methylobacterium sp. (strain 4-46) GN=ureG PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.031e-54
Identity = 106/153 (69.28%), Postives = 122/153 (79.74%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKA-DLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGAD 636
            VGIGGPVG+GKTALM  LCK LR ++ L A+TNDI+TKED   L   GALPEERI  VETGGCPH AIRED SINL  + E+   F + DL+L ESGGDNLAA FS ELAD  +Y+IDV+GG+KIPRKGGPGIT++DLLVINKTDLA  +GAD
Sbjct:   11 VGIGGPVGSGKTALMEGLCKALRGRFDLCAITNDIYTKEDARLLTVAGALPEERIMGVETGGCPHTAIREDASINLAAVAEMRRRFPSLDLILIESGGDNLAATFSPELADLTLYVIDVAGGEKIPRKGGPGITRSDLLVINKTDLAPLVGAD 163          
BLAST of CF836233 vs. ExPASy Swiss-Prot
Match: UREG1_METPB (Urease accessory protein ureG 1 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=ureG1 PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.031e-54
Identity = 104/153 (67.97%), Postives = 122/153 (79.74%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGAD 636
            VGIGGPVG+GKTALM  LC+  RD+Y + A+TNDI+TKED   L   GALPEERI  VETGGCPH AIRED SINL  + E+   F K DL+L ESGGDNLAA FS ELAD  +Y+IDV+GG+KIPRKGGPGIT++DLL++NKTDLA  +GAD
Sbjct:   10 VGIGGPVGSGKTALMEQLCRRFRDRYEICAITNDIYTKEDARILTVAGALPEERILGVETGGCPHTAIREDASINLAAVAEMRRRFPKLDLVLIESGGDNLAATFSPELADITLYVIDVAGGEKIPRKGGPGITRSDLLIVNKTDLAPLVGAD 162          
BLAST of CF836233 vs. ExPASy Swiss-Prot
Match: UREG1_METEP (Urease accessory protein ureG 1 OS=Methylobacterium extorquens (strain PA1) GN=ureG1 PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.169e-54
Identity = 104/153 (67.97%), Postives = 121/153 (79.08%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGAD 636
            VGIGGPVG+GKTALM  LC+  RD Y + A+TNDI+TKED   L   GALPEERI  VETGGCPH AIRED SINL  + E+   F K DL+L ESGGDNLAA FS ELAD  +Y+IDV+GG+KIPRKGGPGIT++DLL++NKTDLA  +GAD
Sbjct:   10 VGIGGPVGSGKTALMEQLCRRFRDSYEICAITNDIYTKEDARILTVAGALPEERILGVETGGCPHTAIREDASINLAAVAEMRRRFPKLDLVLIESGGDNLAATFSPELADLTLYVIDVAGGEKIPRKGGPGITRSDLLIVNKTDLAPLVGAD 162          
BLAST of CF836233 vs. ExPASy Swiss-Prot
Match: UREG_THEEB (Urease accessory protein ureG OS=Thermosynechococcus elongatus (strain BP-1) GN=ureG PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 6.751e-54
Identity = 104/158 (65.82%), Postives = 124/158 (78.48%), Query Frame = 1
Query:  166 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFK-ADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGAD 636
            E    VG+ GPVG+GKTAL+ ALCK LRD+Y LA VTNDI+T+ED +FL+R+ ALP ERI  VETGGCPH AIRED S+NL  +++L   F+  DL+  ESGGDNLAA FS EL D  IY+IDV+ GDKIPRKGGPGIT++DLLVINK DLA  +GAD
Sbjct:    2 ETVLRVGVAGPVGSGKTALVDALCKALRDRYRLAVVTNDIYTQEDAQFLVRSQALPPERILGVETGGCPHTAIREDASLNLAAIQQLETAFRPLDLIFVESGGDNLAATFSPELVDLTIYVIDVAAGDKIPRKGGPGITKSDLLVINKIDLAPYVGAD 159          
The following BLAST results are available for this feature:
BLAST of CF836233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 254
Match NameE-valueIdentityDescription
UREG_SCHPO4.654e-7163.33Uncharacterized urease accessory protein ureG-like... [more]
UREG_ANADF2.554e-6968.09Urease accessory protein ureG OS=Anaeromyxobacter ... [more]
UREG_SORC51.073e-6763.51Urease accessory protein ureG OS=Sorangium cellulo... [more]
UREG_CYTH32.315e-6268.75Urease accessory protein ureG OS=Cytophaga hutchin... [more]
UREG1_METRJ3.580e-5569.28Urease accessory protein ureG 1 OS=Methylobacteriu... [more]
UREG_METNO6.106e-5570.59Urease accessory protein ureG OS=Methylobacterium ... [more]
UREG_METS43.031e-5469.28Urease accessory protein ureG OS=Methylobacterium ... [more]
UREG1_METPB3.031e-5467.97Urease accessory protein ureG 1 OS=Methylobacteriu... [more]
UREG1_METEP5.169e-5467.97Urease accessory protein ureG 1 OS=Methylobacteriu... [more]
UREG_THEEB6.751e-5465.82Urease accessory protein ureG OS=Thermosynechococc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02K03_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836233 ID=CF836233; Name=CF836233; organism=Citrus sinensis; type=EST; length=637bp
ACCCATGAAAAAAATCATGGTGATTCAACAGCAACATCATGGGTGGGGTC
AGACGGGAGGGTGTATCATAGCCATGATGGACTGGCGCCACACTCGCACG
AACCCATTTACTCTCCAGGCTATTTCAGCAGAAGAGCTCCGCCTATTCTC
AGCAGAAATTTCAATGAGAGAGCTTTTACCGTTGGCATTGGTGGCCCTGT
TGGTACTGGGAAAACAGCTTTAATGCTGGCTTTGTGTAAATTCTTGCGGG
ACAAGTACAGTCTTGCAGCTGTCACAAATGATATTTTCACAAAAGAAGAT
GGTGAATTCCTGATGCGGAATGGTGCTCTGCCTGAGGAGAGAATACGTGC
TGTGGAAACAGGTGGATGTCCTCATGCTGCAATTCGTGAAGACATCAGCA
TCAATCTGGGCCCTCTCGAGGAACTTTCTAACTTGTTCAAAGCAGACCTA
CTCCTTTGCGAATCTGGGGGAGATAATTTAGCTGCCAACTTCAGCAGGGA
ACTTGCAGACTATATCATTTATATAATAGACGTTTCTGGTGGTGATAAAA
TTCCTCGGAAAGGTGGCCCAGGCATCACCCAAGCTGACCTTCTGGTGATA
AACAAAACTGACCTTGCTTCAGCAATAGGAGCTGACT
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