CF836270

Overview
NameCF836270
Unique NameCF836270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length215
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6129 contig Csv1_Contig6129:777..991. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836270 vs. ExPASy Swiss-Prot
Match: TM165_RAT (Transmembrane protein 165 OS=Rattus norvegicus GN=Tmem165 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.811e-18
Identity = 42/69 (60.87%), Postives = 53/69 (76.81%), Query Frame = -1
Query:    9 TFLAEWGDRSQIATIDLATHKNAVGVAVVSTIGHTICTSLAVVGGSMLASKISQRTVATIGGLIFRSFS 215
            TFLAEWGDRSQ+ TI LA  ++  GVAV  T+GH +CT LAV+GG M+A KIS RTV  IGG++F +F+
Sbjct:  243 TFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFA 311          
BLAST of CF836270 vs. ExPASy Swiss-Prot
Match: TM165_MOUSE (Transmembrane protein 165 OS=Mus musculus GN=Tmem165 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.811e-18
Identity = 42/69 (60.87%), Postives = 53/69 (76.81%), Query Frame = -1
Query:    9 TFLAEWGDRSQIATIDLATHKNAVGVAVVSTIGHTICTSLAVVGGSMLASKISQRTVATIGGLIFRSFS 215
            TFLAEWGDRSQ+ TI LA  ++  GVAV  T+GH +CT LAV+GG M+A KIS RTV  IGG++F +F+
Sbjct:  243 TFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFA 311          
BLAST of CF836270 vs. ExPASy Swiss-Prot
Match: TM165_HUMAN (Transmembrane protein 165 OS=Homo sapiens GN=TMEM165 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.811e-18
Identity = 42/69 (60.87%), Postives = 53/69 (76.81%), Query Frame = -1
Query:    9 TFLAEWGDRSQIATIDLATHKNAVGVAVVSTIGHTICTSLAVVGGSMLASKISQRTVATIGGLIFRSFS 215
            TFLAEWGDRSQ+ TI LA  ++  GVAV  T+GH +CT LAV+GG M+A KIS RTV  IGG++F +F+
Sbjct:  244 TFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFA 312          
BLAST of CF836270 vs. ExPASy Swiss-Prot
Match: Y615_SYNY3 (UPF0016 membrane protein sll0615 OS=Synechocystis sp. (strain PCC 6803) GN=sll0615 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.436e-16
Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = -1
Query:    9 TFLAEWGDRSQIATIDLATHKNAVGVAVVSTIGHTICTSLAVVGGSMLASKISQRTVATIGGLIFRSFS 215
            TF+AEWGDR+QIATI LA   NA GV+  + +GHTIC  +AV+GG  +A +IS++TV  IGGL+F  F+
Sbjct:  129 TFVAEWGDRTQIATIALAASNNAWGVSAGAILGHTICAVIAVMGGKFVAGRISEKTVTLIGGLLFYLFA 197          
BLAST of CF836270 vs. ExPASy Swiss-Prot
Match: YD68_SCHPO (UPF0016 membrane protein C17G8.08c OS=Schizosaccharomyces pombe GN=SPAC17G8.08c PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.644e-13
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = -1
Query:   12 TFLAEWGDRSQIATIDLATHKNAVGVAVVSTIGHTICTSLAVVGGSMLASKISQRTVATIGGLIFRSF 215
            TF++EWGDRSQIATI +A   N  GV + + +GH  CT+LAV+ G  +++KI    V  IGG++F +F
Sbjct:  210 TFVSEWGDRSQIATIAMAASDNVYGVFMGANVGHACCTALAVISGKYISTKIKVHKVMFIGGILFIAF 277          
The following BLAST results are available for this feature:
BLAST of CF836270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TM165_RAT2.811e-1860.87Transmembrane protein 165 OS=Rattus norvegicus GN=... [more]
TM165_MOUSE2.811e-1860.87Transmembrane protein 165 OS=Mus musculus GN=Tmem1... [more]
TM165_HUMAN2.811e-1860.87Transmembrane protein 165 OS=Homo sapiens GN=TMEM1... [more]
Y615_SYNY33.436e-1656.52UPF0016 membrane protein sll0615 OS=Synechocystis ... [more]
YD68_SCHPO4.644e-1348.53UPF0016 membrane protein C17G8.08c OS=Schizosaccha... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02L05_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836270 ID=CF836270; Name=CF836270; organism=Citrus sinensis; type=EST; length=215bp
GAACCCCCGGAAAAGCTTCGGAAGATCAAGCCTCCTATTGTAGCCACCGT
ACGTTGTGAAATCTTTGACGCCAGCATGCTCCCACCCACCACGGCCAGTG
ATGTACAGATTGTGTGTCCTATTGTGGACACAACTGCAACTCCTACGGCA
TTTTTGTGTGTTGCCAAATCAATTGTGGCTATCTGGCTACGATCTCCCCA
CTCTGCCAGGAATGT
back to top