CF836272

Overview
NameCF836272
Unique NameCF836272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836272 vs. ExPASy Swiss-Prot
Match: CAPZB_ARATH (Probable F-actin-capping protein subunit beta OS=Arabidopsis thaliana GN=At1g71790 PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 2.974e-66
Identity = 120/150 (80.00%), Postives = 136/150 (90.67%), Query Frame = 2
Query:    2 YEGAFSSVYMWEDDNEGFVACFLIKKDGSKTAQGRRRHLEEGAWDAIHVIEVAPEEEGIARYCLTSTVMLSLTTDHESSGTFSLSGSIRRQMNMDLSVSEGHLCNMGKMIEEMEGKLRNSLDQVYFGKTKEMVCTLRPPSEVI-MRLPDS 448
            YEG  SSVYMWEDDNEGFVACFLIKKDGSK+  GRR  LEEGAWDAIHVI+V  EEE +A+YCLTST+MLSLTTD ESSG F LSGSIRRQM M+L+V++GHLCNMG+MIEE+EGKLRNSLDQVYFGKT+EMVCTLRPP+E++ MRLPD+
Sbjct:  107 YEGGISSVYMWEDDNEGFVACFLIKKDGSKSGHGRRGCLEEGAWDAIHVIQVGSEEEEMAQYCLTSTIMLSLTTDDESSGKFGLSGSIRRQMKMELAVADGHLCNMGRMIEELEGKLRNSLDQVYFGKTREMVCTLRPPAEIVQMRLPDT 256          
BLAST of CF836272 vs. ExPASy Swiss-Prot
Match: CAPZB_DROME (F-actin-capping protein subunit beta OS=Drosophila melanogaster GN=cpb PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.704e-29
Identity = 73/142 (51.41%), Postives = 95/142 (66.90%), Query Frame = 2
Query:    2 YEGAFSSVYMWEDDNEGFVACFLIKK--DGSKTAQGRRRHLEEGAWDAIHVIEVAPEEEG-IARYCLTSTVMLSLTTDHESSGTFSLSGSIRRQMNMDLSVSEG--HLCNMGKMIEEMEGKLRNSLDQVYFGKTKEMVCTLR 412
            YEG  SSVY+W+ D+ GF A  LIKK  DGSK  +G         WD+IHV+EV  +  G  A Y LTST ML L T+ + SGT +L GS+ RQ   D +VSE   H+ N+GKM+EEME K+RN+L+++YFGKTK++V  LR
Sbjct:  112 YEGGVSSVYLWDLDH-GFAAVILIKKAGDGSKMIRG--------CWDSIHVVEVQEKTTGRTAHYKLTSTAMLWLQTNKQGSGTMNLGGSLTRQQEQDANVSESSPHIANIGKMVEEMENKIRNTLNEIYFGKTKDIVNGLR 244          
BLAST of CF836272 vs. ExPASy Swiss-Prot
Match: CAPZB_CHICK (F-actin-capping protein subunit beta isoforms 1 and 2 OS=Gallus gallus GN=CAPZB PE=1 SV=3)

HSP 1 Score: 121.709 bits (304), Expect = 3.554e-27
Identity = 68/142 (47.89%), Postives = 95/142 (66.90%), Query Frame = 2
Query:    2 YEGAFSSVYMWEDDNEGFVACFLIKK--DGSKTAQGRRRHLEEGAWDAIHVIEVAPEEEG-IARYCLTSTVMLSLTTDHESSGTFSLSGSIRRQMNMDLSVSEG--HLCNMGKMIEEMEGKLRNSLDQVYFGKTKEMVCTLR 412
            +EG  SSVY+W+ D+ GF    LIKK  DGSK  +G         WD+IHV+EV  +  G  A Y LTSTVML L T+   SGT +L GS+ RQM  D +VS+   H+ N+G+++E+ME K+R++L+++YFGKTK++V  LR
Sbjct:  112 FEGGVSSVYLWDLDH-GFAGVILIKKAGDGSKKIKG--------CWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKTGSGTMNLGGSLTRQMEKDETVSDSSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIVNGLR 244          
BLAST of CF836272 vs. ExPASy Swiss-Prot
Match: CAPZB_RAT (F-actin-capping protein subunit beta OS=Rattus norvegicus GN=Capzb PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.641e-27
Identity = 68/142 (47.89%), Postives = 95/142 (66.90%), Query Frame = 2
Query:    2 YEGAFSSVYMWEDDNEGFVACFLIKK--DGSKTAQGRRRHLEEGAWDAIHVIEVAPEEEG-IARYCLTSTVMLSLTTDHESSGTFSLSGSIRRQMNMDLSVSE--GHLCNMGKMIEEMEGKLRNSLDQVYFGKTKEMVCTLR 412
            +EG  SSVY+W+ D+ GF    LIKK  DGSK  +G         WD+IHV+EV  +  G  A Y LTSTVML L T+   SGT +L GS+ RQM  D +VS+   H+ N+G+++E+ME K+R++L+++YFGKTK++V  LR
Sbjct:  112 FEGGVSSVYLWDLDH-GFAGVILIKKAGDGSKKIKG--------CWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIVNGLR 244          
BLAST of CF836272 vs. ExPASy Swiss-Prot
Match: CAPZB_PONAB (F-actin-capping protein subunit beta OS=Pongo abelii GN=CAPZB PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 4.641e-27
Identity = 68/142 (47.89%), Postives = 95/142 (66.90%), Query Frame = 2
Query:    2 YEGAFSSVYMWEDDNEGFVACFLIKK--DGSKTAQGRRRHLEEGAWDAIHVIEVAPEEEG-IARYCLTSTVMLSLTTDHESSGTFSLSGSIRRQMNMDLSVSE--GHLCNMGKMIEEMEGKLRNSLDQVYFGKTKEMVCTLR 412
            +EG  SSVY+W+ D+ GF    LIKK  DGSK  +G         WD+IHV+EV  +  G  A Y LTSTVML L T+   SGT +L GS+ RQM  D +VS+   H+ N+G+++E+ME K+R++L+++YFGKTK++V  LR
Sbjct:  112 FEGGVSSVYLWDLDH-GFAGVILIKKAGDGSKKIKG--------CWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIVNGLR 244          
BLAST of CF836272 vs. ExPASy Swiss-Prot
Match: CAPZB_PIG (F-actin-capping protein subunit beta OS=Sus scrofa GN=CAPZB PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.641e-27
Identity = 68/142 (47.89%), Postives = 95/142 (66.90%), Query Frame = 2
Query:    2 YEGAFSSVYMWEDDNEGFVACFLIKK--DGSKTAQGRRRHLEEGAWDAIHVIEVAPEEEG-IARYCLTSTVMLSLTTDHESSGTFSLSGSIRRQMNMDLSVSE--GHLCNMGKMIEEMEGKLRNSLDQVYFGKTKEMVCTLR 412
            +EG  SSVY+W+ D+ GF    LIKK  DGSK  +G         WD+IHV+EV  +  G  A Y LTSTVML L T+   SGT +L GS+ RQM  D +VS+   H+ N+G+++E+ME K+R++L+++YFGKTK++V  LR
Sbjct:  112 FEGGVSSVYLWDLDH-GFAGVILIKKAGDGSKKIKG--------CWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIVNGLR 244          
BLAST of CF836272 vs. ExPASy Swiss-Prot
Match: CAPZB_MOUSE (F-actin-capping protein subunit beta OS=Mus musculus GN=Capzb PE=1 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 4.641e-27
Identity = 68/142 (47.89%), Postives = 95/142 (66.90%), Query Frame = 2
Query:    2 YEGAFSSVYMWEDDNEGFVACFLIKK--DGSKTAQGRRRHLEEGAWDAIHVIEVAPEEEG-IARYCLTSTVMLSLTTDHESSGTFSLSGSIRRQMNMDLSVSE--GHLCNMGKMIEEMEGKLRNSLDQVYFGKTKEMVCTLR 412
            +EG  SSVY+W+ D+ GF    LIKK  DGSK  +G         WD+IHV+EV  +  G  A Y LTSTVML L T+   SGT +L GS+ RQM  D +VS+   H+ N+G+++E+ME K+R++L+++YFGKTK++V  LR
Sbjct:  112 FEGGVSSVYLWDLDH-GFAGVILIKKAGDGSKKIKG--------CWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIVNGLR 244          
BLAST of CF836272 vs. ExPASy Swiss-Prot
Match: CAPZB_HUMAN (F-actin-capping protein subunit beta OS=Homo sapiens GN=CAPZB PE=1 SV=4)

HSP 1 Score: 121.324 bits (303), Expect = 4.641e-27
Identity = 68/142 (47.89%), Postives = 95/142 (66.90%), Query Frame = 2
Query:    2 YEGAFSSVYMWEDDNEGFVACFLIKK--DGSKTAQGRRRHLEEGAWDAIHVIEVAPEEEG-IARYCLTSTVMLSLTTDHESSGTFSLSGSIRRQMNMDLSVSE--GHLCNMGKMIEEMEGKLRNSLDQVYFGKTKEMVCTLR 412
            +EG  SSVY+W+ D+ GF    LIKK  DGSK  +G         WD+IHV+EV  +  G  A Y LTSTVML L T+   SGT +L GS+ RQM  D +VS+   H+ N+G+++E+ME K+R++L+++YFGKTK++V  LR
Sbjct:  112 FEGGVSSVYLWDLDH-GFAGVILIKKAGDGSKKIKG--------CWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIVNGLR 244          
BLAST of CF836272 vs. ExPASy Swiss-Prot
Match: CAPZB_BOVIN (F-actin-capping protein subunit beta OS=Bos taurus GN=CAPZB PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.641e-27
Identity = 68/142 (47.89%), Postives = 95/142 (66.90%), Query Frame = 2
Query:    2 YEGAFSSVYMWEDDNEGFVACFLIKK--DGSKTAQGRRRHLEEGAWDAIHVIEVAPEEEG-IARYCLTSTVMLSLTTDHESSGTFSLSGSIRRQMNMDLSVSE--GHLCNMGKMIEEMEGKLRNSLDQVYFGKTKEMVCTLR 412
            +EG  SSVY+W+ D+ GF    LIKK  DGSK  +G         WD+IHV+EV  +  G  A Y LTSTVML L T+   SGT +L GS+ RQM  D +VS+   H+ N+G+++E+ME K+R++L+++YFGKTK++V  LR
Sbjct:  141 FEGGVSSVYLWDLDH-GFAGVILIKKAGDGSKKIKG--------CWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIVNGLR 273          
BLAST of CF836272 vs. ExPASy Swiss-Prot
Match: CAPZB_DICDI (F-actin-capping protein subunit beta OS=Dictyostelium discoideum GN=acpA PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.303e-26
Identity = 70/142 (49.30%), Postives = 95/142 (66.90%), Query Frame = 2
Query:    2 YEGAFSSVYMWE-DDNEGFVACFLIKK--DGSKTAQGRRRHLEEGAWDAIHVIEVAPEEEGIARYCLTSTVMLSLTTDHESSGTFSLSGSIRRQMNMDLSVSE--GHLCNMGKMIEEMEGKLRNSLDQVYFGKTKEMVCTLR 412
            +EG  SSVY W+ DDN  F A  L+KK  D SK  Q  R     G WD+IHV+EV   ++  A Y LTSTVMLS+ TD++++G  +L+GS+ RQ   + + +E   H  N+GKM+E+ME KLR +L+ +YFGKTKE+V TLR
Sbjct:  112 FEGGVSSVYCWDLDDN--FAAVVLMKKTQDQSKKGQPMR-----GTWDSIHVVEVKLGKKDKAVYKLTSTVMLSIETDNDNTGKVNLAGSLTRQDEKEYTFNEVDTHCVNIGKMVEDMESKLRQTLETIYFGKTKEVVNTLR 246          
The following BLAST results are available for this feature:
BLAST of CF836272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
CAPZB_ARATH2.974e-6680.00Probable F-actin-capping protein subunit beta OS=A... [more]
CAPZB_DROME1.704e-2951.41F-actin-capping protein subunit beta OS=Drosophila... [more]
CAPZB_CHICK3.554e-2747.89F-actin-capping protein subunit beta isoforms 1 an... [more]
CAPZB_RAT4.641e-2747.89F-actin-capping protein subunit beta OS=Rattus nor... [more]
CAPZB_PONAB4.641e-2747.89F-actin-capping protein subunit beta OS=Pongo abel... [more]
CAPZB_PIG4.641e-2747.89F-actin-capping protein subunit beta OS=Sus scrofa... [more]
CAPZB_MOUSE4.641e-2747.89F-actin-capping protein subunit beta OS=Mus muscul... [more]
CAPZB_HUMAN4.641e-2747.89F-actin-capping protein subunit beta OS=Homo sapie... [more]
CAPZB_BOVIN4.641e-2747.89F-actin-capping protein subunit beta OS=Bos taurus... [more]
CAPZB_DICDI2.303e-2649.30F-actin-capping protein subunit beta OS=Dictyostel... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836272 ID=CF836272; Name=CF836272; organism=Citrus sinensis; type=EST; length=680bp
TTATGAAGGTGCTTTTTCATCAGTTTACATGTGGGAAGATGATAATGAAG
GCTTTGTAGCTTGCTTTTTGATAAAGAAAGATGGTTCAAAGACAGCACAG
GGAAGAAGGAGACATTTGGAAGAGGGAGCCTGGGATGCTATACATGTTAT
AGAAGTGGCGCCAGAGGAAGAAGGAATAGCTCGTTATTGTTTAACTAGTA
CTGTCATGTTGTCTTTGACTACGGATCATGAGTCATCAGGCACATTCAGT
TTGTCTGGATCAATTAGACGGCAGATGAATATGGACCTCTCAGTTTCAGA
GGGCCATCTTTGTAACATGGGAAAGATGATAGAAGAAATGGAGGGCAAAC
TGAGGAACTCACTAGATCAGGTTTATTTTGGGAAGACGAAAGAAATGGTT
TGCACCCTACGACCACCATCTGAAGTGATAATGAGACTGCCAGACAGTAC
GGGCTTGTGAAAAGGAGATATGCTTCCATTCGTTAGTGAGATATGAAAGT
CATTTGTCCTGTACTCACATTTCAGACATTGATATGTTCTAAGGTCGCGC
GGTCATAGATTGAACCTTCTCTAGGATTTTGCTTTGCTTGTTCCCCAGAC
AATTTTTTCTTTTACCCCTTTTTTTCTTTTTTTCAACCAGGTACAACTTC
GATGACACATTTGATGTATAACCTCATTTT
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