CF836274
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB1_ARATH (Tryptophan synthase beta chain 1, chloroplastic OS=Arabidopsis thaliana GN=TSB1 PE=2 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 2.731e-46 Identity = 102/175 (58.29%), Postives = 119/175 (68.00%), Query Frame = 2 Query: 26 LMAVATGSSFCCKLAK-PCAFTTSNSSQSPFKLKKFTASPAK-----STSIRCTIARDPVVPMEAKKESDPAPWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532 + A T ++F ++ P + + +SPFK K+T P+ S S+ CTIA+DP V M A SDPA WQRPD VPETLM+ALSELESA + LA D DFQ EL+GIL+DYVGRE+PLYFAERLTEHYRR NG GP IYLKREDLNHTGAHKINNAV QA Sbjct: 1 MAASGTSATFRASVSSAPSSSSQLTHLKSPFKAVKYTPLPSSRSKSSSFSVSCTIAKDPPVLMAAG--SDPALWQRPDSFGRFGKFGGKYVPETLMHALSELESAFYALATDDDFQRELAGILKDYVGRESPLYFAERLTEHYRRENGEGPLIYLKREDLNHTGAHKINNAVAQA 173
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRBP2_ARATH (Tryptophan synthase beta chain 2, chloroplastic OS=Arabidopsis thaliana GN=TSB2 PE=2 SV=2) HSP 1 Score: 178.333 bits (451), Expect = 1.958e-44 Identity = 95/154 (61.69%), Postives = 107/154 (69.48%), Query Frame = 2 Query: 104 QSPFKLKKFTASPA------KSTSIRCTIARDPVVPMEAKKE-----SDPAPWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532 +SP KL KFT P+ S S+ CTIA+DP V M ++ SDP WQRPD VPETLM+ALSELE+A + LA D DFQ EL+ IL+DYVGRE+PLYFAERLTEHYRR NG GP IYLKREDLNHTGAHKINNAV QA Sbjct: 25 RSPSKLPKFTPLPSARSRSSSSFSVSCTIAKDPAVVMADSEKIKAAGSDPTMWQRPDSFGRFGKFGGKYVPETLMHALSELETAFYSLATDEDFQRELAEILKDYVGRESPLYFAERLTEHYRRENGEGPLIYLKREDLNHTGAHKINNAVAQA 178
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_CAMAC (Tryptophan synthase beta chain 2, chloroplastic OS=Camptotheca acuminata GN=TSB PE=2 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 2.925e-40 Identity = 92/150 (61.33%), Postives = 104/150 (69.33%), Query Frame = 2 Query: 92 SNSSQSPFKLKKFT--ASPAKSTSIRCTIARDPVVPMEAKK-ESDPAPWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532 SN S+ F L KF S K SI CTIAR+ ME ++ E +P QRPD VPETLMYAL+ELESA L+ D+ FQ+EL GIL+DYVGRE+PLYFAERLT HY+RPNG GP IYLKREDLNHTGAHKINNAV QA Sbjct: 24 SNPSRFSFNLDKFRPRTSAIKVPSICCTIARE----MEKERSEREPDVLQRPDSFGRFGKFGGKYVPETLMYALTELESAFRSLSGDQVFQKELDGILKDYVGRESPLYFAERLTLHYKRPNGEGPEIYLKREDLNHTGAHKINNAVAQA 169
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB2_MAIZE (Tryptophan synthase beta chain 2, chloroplastic (Fragment) OS=Zea mays GN=TSB2 PE=2 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 6.312e-35 Identity = 72/101 (71.29%), Postives = 80/101 (79.21%), Query Frame = 2 Query: 230 QRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532 QRPD VPETLM+AL+ELESA H LA D +FQ+EL GIL+DYVGRE+PLYFAERLTEHY+R +G GP IYLKREDLNHTGAHKINNAV QA Sbjct: 46 QRPDAMGRFGRFGGKYVPETLMHALTELESAFHALATDDEFQKELDGILKDYVGRESPLYFAERLTEHYKRADGTGPLIYLKREDLNHTGAHKINNAVAQA 146
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB1_MAIZE (Tryptophan synthase beta chain 1 (Fragment) OS=Zea mays GN=TSB1 PE=2 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 1.719e-32 Identity = 66/85 (77.65%), Postives = 75/85 (88.24%), Query Frame = 2 Query: 278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532 VPETLM+AL+ELE+A H LA D +FQ+EL GIL+DYVGRE+PLYFAERLTEHY+R +G GP IYLKREDLNH GAHKINNAV QA Sbjct: 8 VPETLMHALTELENAFHALATDDEFQKELDGILKDYVGRESPLYFAERLTEHYKRADGTGPLIYLKREDLNHRGAHKINNAVAQA 92
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_ANAVT (Tryptophan synthase beta chain OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=trpB PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 3.584e-30 Identity = 67/106 (63.21%), Postives = 74/106 (69.81%), Query Frame = 2 Query: 212 SDPAPWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529 S P+ Q PD+ VPETLM AL+ELE+A K D FQ EL +LRDYVGR TPLYFAERLT HY RP+G G IYLKREDLNHTGAHKINNA+GQ Sbjct: 9 STPSNAQVPDIQGRFGRFGGKYVPETLMPALAELETAYQKYRHDPGFQAELQQLLRDYVGRATPLYFAERLTAHYARPDGTGAQIYLKREDLNHTGAHKINNALGQ 114
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_TRIEI (Tryptophan synthase beta chain OS=Trichodesmium erythraeum (strain IMS101) GN=trpB PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 6.113e-30 Identity = 64/106 (60.38%), Postives = 76/106 (71.70%), Query Frame = 2 Query: 215 DPAPWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532 +P Q+PD VPETLM AL +LE+A K + D F++EL +LRDYVGR +PLYFAERLT HY +P+G GP IYLKREDLNHTGAHKINNA+GQA Sbjct: 7 NPTSTQQPDSLGRFGKFGGKYVPETLMPALLQLETACKKYSQDPTFKQELQQLLRDYVGRPSPLYFAERLTAHYTKPDGTGPQIYLKREDLNHTGAHKINNALGQA 112
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB2_ANASP (Tryptophan synthase beta chain 2 OS=Anabaena sp. (strain PCC 7120) GN=trpB2 PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 6.113e-30 Identity = 66/106 (62.26%), Postives = 75/106 (70.75%), Query Frame = 2 Query: 212 SDPAPWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529 S P+ Q PD+ VPETLM AL+ELE+A + +D FQ EL +LRDYVGR TPLYFAERLT HY RP+G G IYLKREDLNHTGAHKINNA+GQ Sbjct: 9 STPSNVQVPDIQGRFGRFGGKYVPETLMPALAELETAYQQYRNDPGFQAELQQLLRDYVGRATPLYFAERLTAHYARPDGTGAQIYLKREDLNHTGAHKINNALGQ 114
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB1_ANASP (Tryptophan synthase beta chain 1 OS=Anabaena sp. (strain PCC 7120) GN=trpB1 PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 3.963e-29 Identity = 63/99 (63.64%), Postives = 70/99 (70.71%), Query Frame = 2 Query: 233 RPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529 RPD VPETLM AL ELE+A K DD +Q EL +LRDYVGR +PLYFAERLTE+Y RP+G G IYLKREDLNHTGAHKINNA+ Q Sbjct: 13 RPDALGRFGKFGGKYVPETLMPALGELETAYQKYRDDASYQTELQNLLRDYVGRPSPLYFAERLTEYYARPDGTGAQIYLKREDLNHTGAHKINNALAQ 111
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_SYNY3 (Tryptophan synthase beta chain OS=Synechocystis sp. (strain PCC 6803) GN=trpB PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 8.828e-29 Identity = 62/100 (62.00%), Postives = 73/100 (73.00%), Query Frame = 2 Query: 230 QRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529 Q PD VPETLM AL+ELE A ++ + FQEEL+G+L+DYVGR +PLYFAERL+ HY RP+G P IYLKREDLNHTGAHKINNA+GQ Sbjct: 13 QYPDALGRFGNYGGKYVPETLMPALTELEEAYYRYRAESSFQEELAGLLKDYVGRSSPLYFAERLSAHYARPDGTYPLIYLKREDLNHTGAHKINNALGQ 112 The following BLAST results are available for this feature:
BLAST of CF836274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 318
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836274 ID=CF836274; Name=CF836274; organism=Citrus sinensis; type=EST; length=532bpback to top |