CF836274

Overview
NameCF836274
Unique NameCF836274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7326 contig Csv1_Contig7326:10..541. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB1_ARATH (Tryptophan synthase beta chain 1, chloroplastic OS=Arabidopsis thaliana GN=TSB1 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.731e-46
Identity = 102/175 (58.29%), Postives = 119/175 (68.00%), Query Frame = 2
Query:   26 LMAVATGSSFCCKLAK-PCAFTTSNSSQSPFKLKKFTASPAK-----STSIRCTIARDPVVPMEAKKESDPAPWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            + A  T ++F   ++  P + +     +SPFK  K+T  P+      S S+ CTIA+DP V M A   SDPA WQRPD            VPETLM+ALSELESA + LA D DFQ EL+GIL+DYVGRE+PLYFAERLTEHYRR NG GP IYLKREDLNHTGAHKINNAV QA
Sbjct:    1 MAASGTSATFRASVSSAPSSSSQLTHLKSPFKAVKYTPLPSSRSKSSSFSVSCTIAKDPPVLMAAG--SDPALWQRPDSFGRFGKFGGKYVPETLMHALSELESAFYALATDDDFQRELAGILKDYVGRESPLYFAERLTEHYRRENGEGPLIYLKREDLNHTGAHKINNAVAQA 173          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRBP2_ARATH (Tryptophan synthase beta chain 2, chloroplastic OS=Arabidopsis thaliana GN=TSB2 PE=2 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 1.958e-44
Identity = 95/154 (61.69%), Postives = 107/154 (69.48%), Query Frame = 2
Query:  104 QSPFKLKKFTASPA------KSTSIRCTIARDPVVPMEAKKE-----SDPAPWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            +SP KL KFT  P+       S S+ CTIA+DP V M   ++     SDP  WQRPD            VPETLM+ALSELE+A + LA D DFQ EL+ IL+DYVGRE+PLYFAERLTEHYRR NG GP IYLKREDLNHTGAHKINNAV QA
Sbjct:   25 RSPSKLPKFTPLPSARSRSSSSFSVSCTIAKDPAVVMADSEKIKAAGSDPTMWQRPDSFGRFGKFGGKYVPETLMHALSELETAFYSLATDEDFQRELAEILKDYVGRESPLYFAERLTEHYRRENGEGPLIYLKREDLNHTGAHKINNAVAQA 178          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_CAMAC (Tryptophan synthase beta chain 2, chloroplastic OS=Camptotheca acuminata GN=TSB PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.925e-40
Identity = 92/150 (61.33%), Postives = 104/150 (69.33%), Query Frame = 2
Query:   92 SNSSQSPFKLKKFT--ASPAKSTSIRCTIARDPVVPMEAKK-ESDPAPWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            SN S+  F L KF    S  K  SI CTIAR+    ME ++ E +P   QRPD            VPETLMYAL+ELESA   L+ D+ FQ+EL GIL+DYVGRE+PLYFAERLT HY+RPNG GP IYLKREDLNHTGAHKINNAV QA
Sbjct:   24 SNPSRFSFNLDKFRPRTSAIKVPSICCTIARE----MEKERSEREPDVLQRPDSFGRFGKFGGKYVPETLMYALTELESAFRSLSGDQVFQKELDGILKDYVGRESPLYFAERLTLHYKRPNGEGPEIYLKREDLNHTGAHKINNAVAQA 169          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB2_MAIZE (Tryptophan synthase beta chain 2, chloroplastic (Fragment) OS=Zea mays GN=TSB2 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 6.312e-35
Identity = 72/101 (71.29%), Postives = 80/101 (79.21%), Query Frame = 2
Query:  230 QRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            QRPD            VPETLM+AL+ELESA H LA D +FQ+EL GIL+DYVGRE+PLYFAERLTEHY+R +G GP IYLKREDLNHTGAHKINNAV QA
Sbjct:   46 QRPDAMGRFGRFGGKYVPETLMHALTELESAFHALATDDEFQKELDGILKDYVGRESPLYFAERLTEHYKRADGTGPLIYLKREDLNHTGAHKINNAVAQA 146          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB1_MAIZE (Tryptophan synthase beta chain 1 (Fragment) OS=Zea mays GN=TSB1 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.719e-32
Identity = 66/85 (77.65%), Postives = 75/85 (88.24%), Query Frame = 2
Query:  278 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            VPETLM+AL+ELE+A H LA D +FQ+EL GIL+DYVGRE+PLYFAERLTEHY+R +G GP IYLKREDLNH GAHKINNAV QA
Sbjct:    8 VPETLMHALTELENAFHALATDDEFQKELDGILKDYVGRESPLYFAERLTEHYKRADGTGPLIYLKREDLNHRGAHKINNAVAQA 92          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_ANAVT (Tryptophan synthase beta chain OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=trpB PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.584e-30
Identity = 67/106 (63.21%), Postives = 74/106 (69.81%), Query Frame = 2
Query:  212 SDPAPWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529
            S P+  Q PD+           VPETLM AL+ELE+A  K   D  FQ EL  +LRDYVGR TPLYFAERLT HY RP+G G  IYLKREDLNHTGAHKINNA+GQ
Sbjct:    9 STPSNAQVPDIQGRFGRFGGKYVPETLMPALAELETAYQKYRHDPGFQAELQQLLRDYVGRATPLYFAERLTAHYARPDGTGAQIYLKREDLNHTGAHKINNALGQ 114          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_TRIEI (Tryptophan synthase beta chain OS=Trichodesmium erythraeum (strain IMS101) GN=trpB PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.113e-30
Identity = 64/106 (60.38%), Postives = 76/106 (71.70%), Query Frame = 2
Query:  215 DPAPWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            +P   Q+PD            VPETLM AL +LE+A  K + D  F++EL  +LRDYVGR +PLYFAERLT HY +P+G GP IYLKREDLNHTGAHKINNA+GQA
Sbjct:    7 NPTSTQQPDSLGRFGKFGGKYVPETLMPALLQLETACKKYSQDPTFKQELQQLLRDYVGRPSPLYFAERLTAHYTKPDGTGPQIYLKREDLNHTGAHKINNALGQA 112          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB2_ANASP (Tryptophan synthase beta chain 2 OS=Anabaena sp. (strain PCC 7120) GN=trpB2 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.113e-30
Identity = 66/106 (62.26%), Postives = 75/106 (70.75%), Query Frame = 2
Query:  212 SDPAPWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529
            S P+  Q PD+           VPETLM AL+ELE+A  +  +D  FQ EL  +LRDYVGR TPLYFAERLT HY RP+G G  IYLKREDLNHTGAHKINNA+GQ
Sbjct:    9 STPSNVQVPDIQGRFGRFGGKYVPETLMPALAELETAYQQYRNDPGFQAELQQLLRDYVGRATPLYFAERLTAHYARPDGTGAQIYLKREDLNHTGAHKINNALGQ 114          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB1_ANASP (Tryptophan synthase beta chain 1 OS=Anabaena sp. (strain PCC 7120) GN=trpB1 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.963e-29
Identity = 63/99 (63.64%), Postives = 70/99 (70.71%), Query Frame = 2
Query:  233 RPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529
            RPD            VPETLM AL ELE+A  K  DD  +Q EL  +LRDYVGR +PLYFAERLTE+Y RP+G G  IYLKREDLNHTGAHKINNA+ Q
Sbjct:   13 RPDALGRFGKFGGKYVPETLMPALGELETAYQKYRDDASYQTELQNLLRDYVGRPSPLYFAERLTEYYARPDGTGAQIYLKREDLNHTGAHKINNALAQ 111          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_SYNY3 (Tryptophan synthase beta chain OS=Synechocystis sp. (strain PCC 6803) GN=trpB PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.828e-29
Identity = 62/100 (62.00%), Postives = 73/100 (73.00%), Query Frame = 2
Query:  230 QRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529
            Q PD            VPETLM AL+ELE A ++   +  FQEEL+G+L+DYVGR +PLYFAERL+ HY RP+G  P IYLKREDLNHTGAHKINNA+GQ
Sbjct:   13 QYPDALGRFGNYGGKYVPETLMPALTELEEAYYRYRAESSFQEELAGLLKDYVGRSSPLYFAERLSAHYARPDGTYPLIYLKREDLNHTGAHKINNALGQ 112          
The following BLAST results are available for this feature:
BLAST of CF836274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
TRPB1_ARATH2.731e-4658.29Tryptophan synthase beta chain 1, chloroplastic OS... [more]
TRBP2_ARATH1.958e-4461.69Tryptophan synthase beta chain 2, chloroplastic OS... [more]
TRPB_CAMAC2.925e-4061.33Tryptophan synthase beta chain 2, chloroplastic OS... [more]
TRPB2_MAIZE6.312e-3571.29Tryptophan synthase beta chain 2, chloroplastic (F... [more]
TRPB1_MAIZE1.719e-3277.65Tryptophan synthase beta chain 1 (Fragment) OS=Zea... [more]
TRPB_ANAVT3.584e-3063.21Tryptophan synthase beta chain OS=Anabaena variabi... [more]
TRPB_TRIEI6.113e-3060.38Tryptophan synthase beta chain OS=Trichodesmium er... [more]
TRPB2_ANASP6.113e-3062.26Tryptophan synthase beta chain 2 OS=Anabaena sp. (... [more]
TRPB1_ANASP3.963e-2963.64Tryptophan synthase beta chain 1 OS=Anabaena sp. (... [more]
TRPB_SYNY38.828e-2962.00Tryptophan synthase beta chain OS=Synechocystis sp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836274 ID=CF836274; Name=CF836274; organism=Citrus sinensis; type=EST; length=532bp
TCCATATCCCTCCTTTAAAAAACCTCTAATGGCCGTCGCCACAGGTTCAA
GCTTCTGTTGCAAACTCGCAAAGCCCTGCGCTTTCACGACATCGAATTCC
TCGCAGTCGCCCTTCAAGTTGAAGAAATTTACAGCCAGCCCAGCCAAATC
GACGTCCATTCGCTGTACCATTGCGAGAGACCCGGTCGTTCCCATGGAGG
CCAAGAAGGAGTCCGACCCTGCCCCGTGGCAGAGACCTGATGTGTTTGGC
CGGTTCGGTAGGTTCGGCGGGAAGTTCGTCCCTGAGACGCTAATGTACGC
GCTTTCTGAGCTGGAATCCGCACTTCATAAACTCGCCGACGACCGAGATT
TTCAGGAGGAACTTTCGGGGATTTTGAGAGACTATGTCGGCAGGGAGACT
CCGCTTTATTTTGCTGAGCGGCTTACGGAGCACTACAGGCGGCCTAACGG
GGGAGGGCCTCACATATACCTCAAGAGGGAGGACCTCAACCACACTGGGG
CCCACAAGATCAACAATGCTGTTGGCCAAGCT
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