CF836279

Overview
NameCF836279
Unique NameCF836279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length401
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836279 vs. ExPASy Swiss-Prot
Match: SCP1_ARATH (Serine carboxypeptidase-like 1 OS=Arabidopsis thaliana GN=SCPL1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.794e-18
Identity = 39/56 (69.64%), Postives = 49/56 (87.50%), Query Frame = 2
Query:  233 SHQTVATLPGFDGHLPFKLETGYIGVGENDDVQLIYYFIESERSPEDDPLVLWLTG 400
            S   V +LPGF+G LPF+LETGYIGVGE ++VQL YYFI+SER+P++DPL+LWLTG
Sbjct:   29 SASIVKSLPGFEGQLPFELETGYIGVGEEEEVQLFYYFIKSERNPKEDPLILWLTG 84          
BLAST of CF836279 vs. ExPASy Swiss-Prot
Match: SCP7_ARATH (Serine carboxypeptidase-like 7 OS=Arabidopsis thaliana GN=SCPL7 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.225e-18
Identity = 39/56 (69.64%), Postives = 49/56 (87.50%), Query Frame = 2
Query:  233 SHQTVATLPGFDGHLPFKLETGYIGVGENDDVQLIYYFIESERSPEDDPLVLWLTG 400
            S   V +LPGFDG LPF+LETGYIGVGE ++VQL YYFI+SER+P++DPL+LWL+G
Sbjct:   25 SASIVKSLPGFDGPLPFELETGYIGVGEEEEVQLFYYFIKSERNPQEDPLLLWLSG 80          
BLAST of CF836279 vs. ExPASy Swiss-Prot
Match: SCP6_ARATH (Serine carboxypeptidase-like 6 OS=Arabidopsis thaliana GN=SCPL6 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.225e-18
Identity = 39/56 (69.64%), Postives = 49/56 (87.50%), Query Frame = 2
Query:  233 SHQTVATLPGFDGHLPFKLETGYIGVGENDDVQLIYYFIESERSPEDDPLVLWLTG 400
            S   V +LPGF+G LPF+LETGYIGVGE ++VQL YYFI+SER+P++DPL+LWLTG
Sbjct:   29 SASVVKSLPGFEGPLPFELETGYIGVGEEEEVQLFYYFIKSERNPKEDPLLLWLTG 84          
BLAST of CF836279 vs. ExPASy Swiss-Prot
Match: SCP2_ARATH (Serine carboxypeptidase-like 2 OS=Arabidopsis thaliana GN=SCPL2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.387e-17
Identity = 38/56 (67.86%), Postives = 48/56 (85.71%), Query Frame = 2
Query:  233 SHQTVATLPGFDGHLPFKLETGYIGVGENDDVQLIYYFIESERSPEDDPLVLWLTG 400
            S   V  LPGF+G LPF+LETGYIG+GE ++VQL YYFI+SER+P++DPL+LWLTG
Sbjct:   29 SASIVKFLPGFEGPLPFELETGYIGIGEEEEVQLFYYFIKSERNPKEDPLILWLTG 84          
BLAST of CF836279 vs. ExPASy Swiss-Prot
Match: SCP4_ARATH (Serine carboxypeptidase-like 4 OS=Arabidopsis thaliana GN=SCPL4 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.811e-17
Identity = 39/56 (69.64%), Postives = 48/56 (85.71%), Query Frame = 2
Query:  233 SHQTVATLPGFDGHLPFKLETGYIGVGENDDVQLIYYFIESERSPEDDPLVLWLTG 400
            S   V  LPGF+G LPF+LETGYIGVGE ++VQL YYFI+SER+P++DPL+LWLTG
Sbjct:   29 SASIVKFLPGFEGPLPFELETGYIGVGEEEEVQLFYYFIKSERNPKEDPLLLWLTG 84          
BLAST of CF836279 vs. ExPASy Swiss-Prot
Match: SCP12_ARATH (Serine carboxypeptidase-like 12 OS=Arabidopsis thaliana GN=SCPL12 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.366e-17
Identity = 38/56 (67.86%), Postives = 48/56 (85.71%), Query Frame = 2
Query:  233 SHQTVATLPGFDGHLPFKLETGYIGVGENDDVQLIYYFIESERSPEDDPLVLWLTG 400
            S   V  LPGF+G LPF+LETGYIG+GE +DVQL YYFI+SER+P++DPL+LWL+G
Sbjct:   21 SGSIVKFLPGFEGPLPFELETGYIGIGEEEDVQLFYYFIKSERNPKEDPLLLWLSG 76          
BLAST of CF836279 vs. ExPASy Swiss-Prot
Match: SCP3_ARATH (Serine carboxypeptidase-like 3 OS=Arabidopsis thaliana GN=SCPL3 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.035e-17
Identity = 36/52 (69.23%), Postives = 48/52 (92.31%), Query Frame = 2
Query:  245 VATLPGFDGHLPFKLETGYIGVGENDDVQLIYYFIESERSPEDDPLVLWLTG 400
            + +LPGF+G LPF+LETGYIGVGE ++VQL YYFI+SER+P++DPL+LWL+G
Sbjct:   33 IKSLPGFEGPLPFELETGYIGVGEEEEVQLFYYFIKSERNPKEDPLLLWLSG 84          
BLAST of CF836279 vs. ExPASy Swiss-Prot
Match: SCP5_ARATH (Serine carboxypeptidase-like 5 OS=Arabidopsis thaliana GN=SCPL5 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.270e-17
Identity = 37/56 (66.07%), Postives = 48/56 (85.71%), Query Frame = 2
Query:  233 SHQTVATLPGFDGHLPFKLETGYIGVGENDDVQLIYYFIESERSPEDDPLVLWLTG 400
            S   V  LPGF+G LPF+LETGYIG+GE ++VQL YYFI+SER+P++DPL+LWL+G
Sbjct:   28 SASIVKFLPGFEGSLPFELETGYIGIGEEEEVQLFYYFIKSERNPKEDPLLLWLSG 83          
BLAST of CF836279 vs. ExPASy Swiss-Prot
Match: SCP13_ARATH (Serine carboxypeptidase-like 13 OS=Arabidopsis thaliana GN=SCPL13 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.270e-17
Identity = 37/56 (66.07%), Postives = 48/56 (85.71%), Query Frame = 2
Query:  233 SHQTVATLPGFDGHLPFKLETGYIGVGENDDVQLIYYFIESERSPEDDPLVLWLTG 400
            S   V  LPGF+G LPF+LETGYIG+GE ++VQL YYFI+SE++PE+DPL+LWL+G
Sbjct:   22 SGSIVKFLPGFEGPLPFELETGYIGIGEEEEVQLFYYFIKSEKNPEEDPLLLWLSG 77          
BLAST of CF836279 vs. ExPASy Swiss-Prot
Match: SCP18_ARATH (Serine carboxypeptidase-like 18 OS=Arabidopsis thaliana GN=SCPL18 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 6.883e-17
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = 2
Query:  233 SHQTVATLPGFDGHLPFKLETGYIGVGENDDVQLIYYFIESERSPEDDPLVLWLTG 400
            S   ++ LPGF+G LPF LETGYIGVGE + VQL YYFI+SE +PE+DPL++WLTG
Sbjct:   25 SASVISYLPGFEGLLPFHLETGYIGVGEGEKVQLFYYFIKSENNPEEDPLIIWLTG 80          
The following BLAST results are available for this feature:
BLAST of CF836279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
SCP1_ARATH2.794e-1869.64Serine carboxypeptidase-like 1 OS=Arabidopsis thal... [more]
SCP7_ARATH6.225e-1869.64Serine carboxypeptidase-like 7 OS=Arabidopsis thal... [more]
SCP6_ARATH6.225e-1869.64Serine carboxypeptidase-like 6 OS=Arabidopsis thal... [more]
SCP2_ARATH1.387e-1767.86Serine carboxypeptidase-like 2 OS=Arabidopsis thal... [more]
SCP4_ARATH1.811e-1769.64Serine carboxypeptidase-like 4 OS=Arabidopsis thal... [more]
SCP12_ARATH2.366e-1767.86Serine carboxypeptidase-like 12 OS=Arabidopsis tha... [more]
SCP3_ARATH4.035e-1769.23Serine carboxypeptidase-like 3 OS=Arabidopsis thal... [more]
SCP5_ARATH5.270e-1766.07Serine carboxypeptidase-like 5 OS=Arabidopsis thal... [more]
SCP13_ARATH5.270e-1766.07Serine carboxypeptidase-like 13 OS=Arabidopsis tha... [more]
SCP18_ARATH6.883e-1766.07Serine carboxypeptidase-like 18 OS=Arabidopsis tha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02L10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836279 ID=CF836279; Name=CF836279; organism=Citrus sinensis; type=EST; length=401bp
TTTTGGGCTCGCTATTTTTTGTTCGGAATATCGTACGAGCAGCTCATTAA
ACTTTCCTAAAATAGTGAGCAGCGCCAGTGATCAAACGTTGCATCGACGG
TGGCGGCTTCAGTTTTATTATTTGCTTGATTTGTGTATTTGACAAATCAA
AGCACAAATGGCAGCACCCTATTTGCTGTTATCGTCTGCATTTCTTCTTT
TGCTTCTCTCTAGTAACTTCTCTGCACTCCGTTCTCACCAAACCGTCGCA
ACCCTGCCTGGCTTTGATGGTCATCTCCCGTTCAAACTCGAAACTGGGTA
TATTGGGGTAGGAGAGAATGATGATGTGCAGCTGATTTACTACTTTATTG
AATCCGAGCGGAGTCCTGAAGATGACCCTCTCGTGCTCTGGCTCACTGGA
G
back to top