CF836280

Overview
NameCF836280
Unique NameCF836280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836280 vs. ExPASy Swiss-Prot
Match: ILV5_ARATH (Ketol-acid reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=At3g58610 PE=2 SV=2)

HSP 1 Score: 284.648 bits (727), Expect = 2.592e-76
Identity = 143/155 (92.26%), Postives = 146/155 (94.19%), Query Frame = -3
Query:  150 KVGERVRSTRPAGDLGPLHPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYIPPQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQGSN 614
            KVGERVR +RPAGDLGPL+PFTAGVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYI  QQALVAVD+ A IN DLISNF SDPVHGAIEVCAQLRPTVDISVP DADFVRPELRQ SN
Sbjct:  437 KVGERVRKSRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDSGAAINRDLISNFFSDPVHGAIEVCAQLRPTVDISVPADADFVRPELRQSSN 591          
BLAST of CF836280 vs. ExPASy Swiss-Prot
Match: ILV5_PEA (Ketol-acid reductoisomerase, chloroplastic OS=Pisum sativum GN=PGAAIR PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 3.742e-75
Identity = 139/155 (89.68%), Postives = 148/155 (95.48%), Query Frame = -3
Query:  150 KVGERVRSTRPAGDLGPLHPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYIPPQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQGSN 614
            KVGERVRSTRPAGDLGPL+PFTAGV+VA+MMAQIE+LRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYI  QQALVAVD+ APIN DLISNF+SDPVHGAI+VCA+LRPT+DISVP  ADFVRPELRQ SN
Sbjct:  427 KVGERVRSTRPAGDLGPLYPFTAGVFVAMMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDSGAPINQDLISNFVSDPVHGAIQVCAELRPTLDISVPAAADFVRPELRQCSN 581          
BLAST of CF836280 vs. ExPASy Swiss-Prot
Match: ILV5_ORYSJ (Ketol-acid reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0573700 PE=1 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 3.742e-75
Identity = 138/154 (89.61%), Postives = 144/154 (93.51%), Query Frame = -3
Query:  153 KVGERVRSTRPAGDLGPLHPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYIPPQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQGS 614
            KVGE+VRSTRP  DLGPLHPFTAGVYVALMMAQIE+LRKKGHSYSEIINESVIESVDSLNPFMHARGV+FMVDNCSTTARLGSRKWAPRFDYI  QQA V VD DAPIN DLISNF+SDPVHGAIEVCA+LRPTVDISVP +ADFVRPELRQ S
Sbjct:  425 KVGEKVRSTRPENDLGPLHPFTAGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAIEVCAELRPTVDISVPANADFVRPELRQSS 578          
BLAST of CF836280 vs. ExPASy Swiss-Prot
Match: ILV5_SPIOL (Ketol-acid reductoisomerase, chloroplastic OS=Spinacia oleracea GN=AHRI PE=1 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 1.204e-73
Identity = 139/152 (91.45%), Postives = 143/152 (94.08%), Query Frame = -3
Query:  159 KVGERVRSTRPAGDLGPLHPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYIPPQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQ 614
            KVGE+VRS RPAGDLGPL+PFTAGVYVALMMAQIEILRKKGHSYSEIINESVIE+VDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYI  QQALVAVDN APIN DLISNFLSDPVH AI VCAQLRP+VDISV  DADFVRPELRQ
Sbjct:  443 KVGEKVRSVRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIEAVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILSQQALVAVDNGAPINQDLISNFLSDPVHEAIGVCAQLRPSVDISVTADADFVRPELRQ 594          
BLAST of CF836280 vs. ExPASy Swiss-Prot
Match: ILV5_NEUCR (Ketol-acid reductoisomerase, mitochondrial OS=Neurospora crassa GN=ilv-2 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.711e-11
Identity = 39/86 (45.35%), Postives = 53/86 (61.63%), Query Frame = -3
Query:  282 LMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYIPPQQALVAVDN---DAPINGD 530
            + +AQ E+LR++GHS SE  NE+V E+  SL P + A G+ +M D CSTTAR G+  W P+F     + AL  V N   D+  NGD
Sbjct:  276 MFLAQYEVLRERGHSPSEAFNETVEEATQSLYPLIGAHGMDWMFDACSTTARRGAIDWTPKF-----KDALKPVFNNLYDSVKNGD 356          
The following BLAST results are available for this feature:
BLAST of CF836280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ILV5_ARATH2.592e-7692.26Ketol-acid reductoisomerase, chloroplastic OS=Arab... [more]
ILV5_PEA3.742e-7589.68Ketol-acid reductoisomerase, chloroplastic OS=Pisu... [more]
ILV5_ORYSJ3.742e-7589.61Ketol-acid reductoisomerase, chloroplastic OS=Oryz... [more]
ILV5_SPIOL1.204e-7391.45Ketol-acid reductoisomerase, chloroplastic OS=Spin... [more]
ILV5_NEUCR1.711e-1145.35Ketol-acid reductoisomerase, mitochondrial OS=Neur... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02L11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836280 ID=CF836280; Name=CF836280; organism=Citrus sinensis; type=EST; length=616bp
CCAACCTTAGAAGGGGGCAACACNCGCCCAGCAAAACTAAAAAAATAAGC
AGCAACTCACACGACTAAGCAAAGNCCCTATCTACAATATCCCTAGGGGA
AATTATTTTTTGGGCTAGAAACAAAAAGTTAAGGATTCACCAGGACTCAA
TTGCTACCCTGACGCAACTCTGGGCGCACAAAATCTGCATCTGGGGGCAC
TGAAATGTCAACAGTTGGTCTCAACTGAGCACAGACTTCAATGGCTCCAT
GGACTGGATCAGAAAGGAAGTTGCTGATGAGATCCCCATTGATGGGGGCA
TCATTGTCCACTGCCACCAAGGCTTGTTGTGGCGGGATGTAATCAAAACG
AGGGGCCCATTTCCTTGATCCCAAACGGGCTGTTGTAGAGCAGTTGTCGA
CCATAAATGAAACTCCACGAGCATGCATGAATGGATTCAATGAATCCACC
GACTCAATCACACTTTCATTGATGATCTCAGAATAGGAGTGCCCTTTCTT
CCTCAGGATCTCAATCTGGGCCATCATCAGAGCCACATAGACACCTGCTG
TGAATGGGTGTAATGGGCCTAAGTCACCTGCTGGACGGGTTGATCGGACT
CGCTCACCAACTTTCC
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