CF836281

Overview
NameCF836281
Unique NameCF836281
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836281 vs. ExPASy Swiss-Prot
Match: ILV5_ARATH (Ketol-acid reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=At3g58610 PE=2 SV=2)

HSP 1 Score: 296.204 bits (757), Expect = 1.141e-79
Identity = 157/231 (67.97%), Postives = 178/231 (77.06%), Query Frame = 1
Query:   31 SPNLVHRRLYETLKGAFKHLNLAFFSSTAKSLRALKTT----RGRGSALGAQMASETALKTPFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSRMKPNSIXXXXXXXXXXXXQSMGLDFPKNIGVIAVCPK 711
            SP+   + L+ +        N+ F SS++KSLR+L  T       GS+L A+M S +A+K P  LDFETSVFKK+ +SLA  +E+IVRGGRDLFK LPDAF GI QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSF EARAAGFTEE+GTLGDI+ETI+GSDLVLLLISDAAQADNYEKIFS MKPNSI            QS GLDFPKNI V+AVCPK
Sbjct:   16 SPSSSSKTLWSSKARTLALPNIGFLSSSSKSLRSLTATVAGNGATGSSLAARMVSSSAVKAPVSLDFETSVFKKEKVSLAGYEEYIVRGGRDLFKHLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRSFEEARAAGFTEESGTLGDIWETIAGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNISVVAVCPK 246          
BLAST of CF836281 vs. ExPASy Swiss-Prot
Match: ILV5_SPIOL (Ketol-acid reductoisomerase, chloroplastic OS=Spinacia oleracea GN=AHRI PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.216e-74
Identity = 148/219 (67.58%), Postives = 169/219 (77.17%), Query Frame = 1
Query:   88 LNLAFF--SSTAKSLRALKTTR-------GRGSALGAQMASETALKTPFL--LDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSRMKPNSIXXXXXXXXXXXXQSMGLDFPKNIGVIAVCPK 711
            LNL F   SST K+ R+LK  R       G GSAL AQM S  ++ TP     DF++SVFKK+ ++L+  DE+IVRGGR+LF LLPDAF GI QIGVIGWGSQ PAQAQNL+DSL EAKSD+VVK+GLRKGS SFAEARAAGF+EENGTLGD++ETISGSDLVLLLISD+AQADNYEK+FS MKPNSI            QS+G DFPKNI VIAVCPK
Sbjct:   34 LNLGFLGSSSTIKACRSLKAARVLPSGANGGGSALSAQMVSAPSINTPSATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLISDSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPK 252          
BLAST of CF836281 vs. ExPASy Swiss-Prot
Match: ILV5_PEA (Ketol-acid reductoisomerase, chloroplastic OS=Pisum sativum GN=PGAAIR PE=2 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 2.084e-73
Identity = 147/221 (66.52%), Postives = 167/221 (75.57%), Query Frame = 1
Query:   49 RRLYETLKGAFKHLNLAFFSSTAKSLRALKTTRGRGSALGAQMASETALKTPFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSRMKPNSIXXXXXXXXXXXXQSMGLDFPKNIGVIAVCPK 711
            + L + +  +F   NL+F   + +S+RA ++    GSALGA   S      P  LDFETSVFKK+ ++LA  +E+IVRGGRDLF LLPDAF GI QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVKVGLRKGS SF EAR AGF+EE GTLGDI+ETISGSDLVLLLISD+AQADNYEKIFS +KPNSI            QS+GLDFPKN  VIAVCPK
Sbjct:   17 KTLAKPVAASFAPTNLSFSKLSPQSIRARRSITV-GSALGATKVSAPPATHPVSLDFETSVFKKERVNLAGHEEYIVRGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKVGLRKGSSSFNEAREAGFSEEKGTLGDIWETISGSDLVLLLISDSAQADNYEKIFSHLKPNSILGLSHGFLLGHLQSIGLDFPKNFSVIAVCPK 236          
BLAST of CF836281 vs. ExPASy Swiss-Prot
Match: ILV5_ORYSJ (Ketol-acid reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0573700 PE=1 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.826e-69
Identity = 139/195 (71.28%), Postives = 153/195 (78.46%), Query Frame = 1
Query:  127 RALKTTRGRGSALGAQMASETALKTPFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSRMKPNSIXXXXXXXXXXXXQSMGLDFPKNIGVIAVCPK 711
            RA+        A+GA M S         LDF+TSVF K+ +SLA  +E+IVRGGR+LF LLP+AF GI QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK+GLRKGS+SF EARAAGFTEE+GTLGDI+ET+SGSDLVLLLISDAAQADNYEKIFS MKPNSI            QS GLDFPKNI VIAVCPK
Sbjct:   49 RAVTAMVAAPPAVGAAMPS---------LDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPK 234          
The following BLAST results are available for this feature:
BLAST of CF836281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ILV5_ARATH1.141e-7967.97Ketol-acid reductoisomerase, chloroplastic OS=Arab... [more]
ILV5_SPIOL3.216e-7467.58Ketol-acid reductoisomerase, chloroplastic OS=Spin... [more]
ILV5_PEA2.084e-7366.52Ketol-acid reductoisomerase, chloroplastic OS=Pisu... [more]
ILV5_ORYSJ1.826e-6971.28Ketol-acid reductoisomerase, chloroplastic OS=Oryz... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02L11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836281 ID=CF836281; Name=CF836281; organism=Citrus sinensis; type=EST; length=712bp
GGCGGGTACTCTCTTTAAAGAGTCCGGCGATCCCCAAATTTAGTCCATCG
CCGCTTGTACGAAACCCTAAAAGGAGCATTCAAGCATCTCAATCTAGCGT
TTTTCTCATCCACCGCGAAGTCCTTGAGAGCTCTCAAAACTACCAGAGGC
AGGGGCTCAGCTCTCGGCGCTCAGATGGCGTCCGAGACAGCTCTCAAGAC
ACCTTTCTTGCTGGATTTTGAGACATCCGTCTTTAAGAAGGACGCGATAT
CACTGGCTAACCGCGATGAGTTCATTGTGAGAGGAGGAAGGGATTTGTTT
AAGTTGCTGCCGGACGCATTCAACGGGATTAACCAGATTGGGGTGATTGG
CTGGGGTTCCCAGGGACCTGCCCAAGCTCAGAATTTGAGGGATTCCCTTG
CTGAAGCTAAATCTGATATTGTTGTCAAGGTTGGGCTTAGGAAGGGCTCT
CGTTCTTTTGCTGAAGCTCGTGCTGCTGGTTTTACTGAAGAGAATGGAAC
TTTGGGGGATATATATGAAACTATTTCAGGCAGTGATCTTGTGTTATTGT
TGATTTCTGATGCTGCTCAGGCAGATAATTATGAGAAGATATTCTCTCGC
ATGAAACCAAACAGCATCCTTGGACTTTCCCATGGGTTTCTTCTTGGGCA
TTTGCAGTCAATGGGACTTGATTTCCCAAAGAATATCGGTGTGATTGCTG
TGTGTCCCAAGG
back to top