CF836282

Overview
NameCF836282
Unique NameCF836282
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10655 contig Csv1_Contig10655:115..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836282 vs. ExPASy Swiss-Prot
Match: PIN1_MALDO (Peptidyl-prolyl cis-trans isomerase 1 OS=Malus domestica GN=PIN1 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.979e-39
Identity = 79/115 (68.70%), Postives = 94/115 (81.74%), Query Frame = -1
Query:  261 NQVRASHILIKHQGFRRKASWKDPEGRVISNPPRESAVFQLQAIREDIVSGKAKFDEVAFRLSDCSSAKRXXXXXXXXXGQMQNPFEEATYNLKIGEISEVVDTDSGVPLIMRTG 605
            NQVRASHILIKHQG RRKASWKDPEG++I N  R+SAV QL+A+R+DI+SGKAKFD++A R SDCSSAKR          QMQ PFEEAT+ LK+GE+S++VDTDSGV +I RTG
Sbjct:    7 NQVRASHILIKHQGSRRKASWKDPEGQIIRNTTRDSAVSQLKALRDDILSGKAKFDDLAARYSDCSSAKRGGDLGPFGRNQMQKPFEEATFALKVGEMSDIVDTDSGVHIIKRTG 121          
BLAST of CF836282 vs. ExPASy Swiss-Prot
Match: PIN1_ARATH (Peptidyl-prolyl cis-trans isomerase 1 OS=Arabidopsis thaliana GN=PIN1 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.602e-37
Identity = 79/114 (69.30%), Postives = 93/114 (81.58%), Query Frame = -1
Query:  264 NQVRASHILIKHQGFRRKASWKDPEGRVISNPPRESAVFQLQAIREDIVSGKAKFDEVAFRLSDCSSAKRXXXXXXXXXGQMQNPFEEATYNLKIGEISEVVDTDSGVPLIMRT 605
            +QV+ASHILIKHQG RRKASWKDPEG++I    RE+AV QL++IREDIVSGKA F+EVA R+SDCSSAKR         GQMQ PFEEATY LK+G+IS++VDTDSGV +I RT
Sbjct:    5 DQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFEEVATRVSDCSSAKRGGDLGSFGRGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRT 118          
BLAST of CF836282 vs. ExPASy Swiss-Prot
Match: PIN1_DIGLA (Peptidyl-prolyl cis-trans isomerase 1 OS=Digitalis lanata GN=PARV12.8 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.895e-32
Identity = 69/116 (59.48%), Postives = 88/116 (75.86%), Query Frame = -1
Query:  261 ANQVRASHILIKHQGFRRKASWKDPEGRVISNPPRESAVFQLQAIREDIVSGKAKFDEVAFRLSDCSSAKRXXXXXXXXXGQMQNPFEEATYNLKIGEISEVVDTDSGVPLIMRTG 608
            + +VRASHILIKHQG RRK+SWKDP+G +IS   R+ AV QLQ++R++++S  A F ++A R S CSSAKR         GQMQ PFEEAT+ LK+GEIS++VDTDSGV +I RTG
Sbjct:    3 SEKVRASHILIKHQGSRRKSSWKDPDGSLISATTRDDAVSQLQSLRQELLSDPASFSDLASRHSHCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEISDIVDTDSGVHIIKRTG 118          
BLAST of CF836282 vs. ExPASy Swiss-Prot
Match: DOD_DROME (Protein dodo OS=Drosophila melanogaster GN=dod PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 3.472e-16
Identity = 45/113 (39.82%), Postives = 67/113 (59.29%), Query Frame = -1
Query:  267 NQVRASHILIKHQGFRRKASWKDPEGRVISNPPRESAVFQLQAIREDIVSGKAKFDEVAFRLSDCSSAKRXXXXXXXXXGQMQNPFEEATYNLKIGEISEVVDTDSGVPLIMR 605
            ++V   H+L+KH+G RR +SW++          +E A   L+  R  IV  +A FDE+A   SDCSSAKR         GQMQ  FE+A + L + ++S +VD+DSG+ +I+R
Sbjct:   56 DEVHCLHLLVKHKGSRRPSSWREAN----ITRTKEEAQLLLEVYRNKIVQQEATFDELARSYSDCSSAKRGGDLGKFGRGQMQAAFEDAAFKLNVNQLSGIVDSDSGLHIILR 164          
BLAST of CF836282 vs. ExPASy Swiss-Prot
Match: PIN1_RHIOR (Peptidyl-prolyl cis-trans isomerase pin1 OS=Rhizopus oryzae GN=pin1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.923e-16
Identity = 50/113 (44.25%), Postives = 68/113 (60.18%), Query Frame = -1
Query:  264 QVRASHILIKHQGFRRKASWKDPEGRVISNPPRESAVFQLQAIREDIVSGKAKFDEVAFRLSDCSSAKRXXXXXXXXXGQMQNPFEEATYNLKIGEISEVVDTDSGVPLIMRT 602
            +VRASH+LIK +  RR +SW++          +E A+  L   +  I SG+     +A   SDC+SAKR         GQMQ PFEEAT+ L++GE+S+ V TDSGV LI+RT
Sbjct:   41 RVRASHLLIKSRESRRPSSWREEH----ITRSKEEALKILTDFQHKIESGQETLSALATNYSDCTSAKRGGDLGYFERGQMQKPFEEATFALQVGELSKPVWTDSGVHLILRT 149          
BLAST of CF836282 vs. ExPASy Swiss-Prot
Match: PIN1_MOUSE (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 OS=Mus musculus GN=Pin1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.839e-15
Identity = 45/113 (39.82%), Postives = 67/113 (59.29%), Query Frame = -1
Query:  264 QVRASHILIKHQGFRRKASWKDPEGRVISNPPRESAVFQLQAIREDIVSGKAKFDEVAFRLSDCSSAKRXXXXXXXXXGQMQNPFEEATYNLKIGEISEVVDTDSGVPLIMRT 602
            +VR SH+L+KH   RR +SW+  +        +E A+  +    + I SG+  F+ +A + SDCSSAK          GQMQ PFE+A++ L+ GE+S  V TDSG+ +I+RT
Sbjct:   56 KVRCSHLLVKHSQSRRPSSWRQEK----ITRSKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGPFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 164          
BLAST of CF836282 vs. ExPASy Swiss-Prot
Match: PIN1_MACFA (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 OS=Macaca fascicularis GN=PIN1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.839e-15
Identity = 45/113 (39.82%), Postives = 67/113 (59.29%), Query Frame = -1
Query:  264 QVRASHILIKHQGFRRKASWKDPEGRVISNPPRESAVFQLQAIREDIVSGKAKFDEVAFRLSDCSSAKRXXXXXXXXXGQMQNPFEEATYNLKIGEISEVVDTDSGVPLIMRT 602
            +VR SH+L+KH   RR +SW+  +        +E A+  +    + I SG+  F+ +A + SDCSSAK          GQMQ PFE+A++ L+ GE+S  V TDSG+ +I+RT
Sbjct:   54 RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162          
BLAST of CF836282 vs. ExPASy Swiss-Prot
Match: PIN1_HUMAN (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 OS=Homo sapiens GN=PIN1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.839e-15
Identity = 45/113 (39.82%), Postives = 67/113 (59.29%), Query Frame = -1
Query:  264 QVRASHILIKHQGFRRKASWKDPEGRVISNPPRESAVFQLQAIREDIVSGKAKFDEVAFRLSDCSSAKRXXXXXXXXXGQMQNPFEEATYNLKIGEISEVVDTDSGVPLIMRT 602
            +VR SH+L+KH   RR +SW+  +        +E A+  +    + I SG+  F+ +A + SDCSSAK          GQMQ PFE+A++ L+ GE+S  V TDSG+ +I+RT
Sbjct:   54 RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162          
BLAST of CF836282 vs. ExPASy Swiss-Prot
Match: PIN1_BOVIN (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 OS=Bos taurus GN=PIN1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.839e-15
Identity = 45/113 (39.82%), Postives = 67/113 (59.29%), Query Frame = -1
Query:  264 QVRASHILIKHQGFRRKASWKDPEGRVISNPPRESAVFQLQAIREDIVSGKAKFDEVAFRLSDCSSAKRXXXXXXXXXGQMQNPFEEATYNLKIGEISEVVDTDSGVPLIMRT 602
            +VR SH+L+KH   RR +SW+  +        +E A+  +    + I SG+  F+ +A + SDCSSAK          GQMQ PFE+A++ L+ GE+S  V TDSG+ +I+RT
Sbjct:   54 RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162          
BLAST of CF836282 vs. ExPASy Swiss-Prot
Match: PIN1_SCHPO (Peptidyl-prolyl cis-trans isomerase pin1 OS=Schizosaccharomyces pombe GN=pin1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.488e-14
Identity = 44/112 (39.29%), Postives = 63/112 (56.25%), Query Frame = -1
Query:  267 QVRASHILIKHQGFRRKASWKDPEGRVISNPPRESAVFQLQAIREDIVSGKAKFDEVAFRLSDCSSAKRXXXXXXXXXGQMQNPFEEATYNLKIGEISEVVDTDSGVPLIMR 602
            ++RASH+L+KH+  RR +SWK+          R+ A    Q ++    SG     ++A + SDCSSA+R          +MQ PFE+A + LK GEIS VV+T SG  +I R
Sbjct:   66 KIRASHLLVKHRESRRPSSWKEEHITRSKEEARKLAEHYEQLLK----SGSVSMHDLAMKESDCSSARRGGELGEFGRDEMQKPFEDAAFALKPGEISGVVETSSGFHIIQR 173          
The following BLAST results are available for this feature:
BLAST of CF836282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PIN1_MALDO4.979e-3968.70Peptidyl-prolyl cis-trans isomerase 1 OS=Malus dom... [more]
PIN1_ARATH1.602e-3769.30Peptidyl-prolyl cis-trans isomerase 1 OS=Arabidops... [more]
PIN1_DIGLA5.895e-3259.48Peptidyl-prolyl cis-trans isomerase 1 OS=Digitalis... [more]
DOD_DROME3.472e-1639.82Protein dodo OS=Drosophila melanogaster GN=dod PE=... [more]
PIN1_RHIOR5.923e-1644.25Peptidyl-prolyl cis-trans isomerase pin1 OS=Rhizop... [more]
PIN1_MOUSE3.839e-1539.82Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
PIN1_MACFA3.839e-1539.82Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
PIN1_HUMAN3.839e-1539.82Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
PIN1_BOVIN3.839e-1539.82Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
PIN1_SCHPO2.488e-1439.29Peptidyl-prolyl cis-trans isomerase pin1 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L12_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836282 ID=CF836282; Name=CF836282; organism=Citrus sinensis; type=EST; length=656bp
TTTTTTTTTTTTTTTTTGAAACCAAACCATGGGAATTTTTTGGAGTCATT
CAAGCAAATCCCAAACCCCAATCAGCCATGGATAAACTACATGCTTTAAA
AAAACAACTCCCACGAGCCAAATATAGCATGGCTCCCCCGCATTATCATA
AAAAAACCAACATTCCTCTGAAGTAAAACCAACGACAACATTCTTGAATA
TGTTTCCAGAATATACTGAACAAATCAGTTAATCCATTATGAGCTTATCA
TTAATAATCAACCAGTCCTCATGATAAGGGGAACCCCACTATCAGTATCC
ACAACTTCACTTATCTCACCAATTTTAAGATTATATGTTGCCTCCTCAAA
AGGGTTCTGCATCTGGCCTCCACCAAAATTACCGAAATCACCGCCGCGTT
TGGCGGAGCTGCAATCGGAAAGGCGAAAGGCGACTTCATCGAACTTGGCC
TTGCCGGAAACGATGTCCTCTCGGATGGCTTGGAGTTGAAAAACGGCGCT
CTCTCTAGGGGGGTTGCTGATGACTCTACCTTCCGGATCCTTCCACGAAG
CCTTCCTTCGAAAACCTTGATGCTTGATCAAGATGTGAGATGCCCTCACC
TGATTGGCCGACGACATTTTTGGTTTCTTCTTGGGACTACTCTTATCTCT
TTCCTT
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