CF836286

Overview
NameCF836286
Unique NameCF836286
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836286_ssr681 microsatellite CF836286_ssr681:681..698. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4561 contig Csv1_Contig4561:359..1069. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.197e-28
Identity = 58/64 (90.62%), Postives = 62/64 (96.88%), Query Frame = 1
Query:   22 KRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 213
            KR+RKN +RGIRQRPWGKWAAEIRDPRKGVRVWLGTFN+AEEAARAYD EAR+IRGKKAKVNFP
Sbjct:  113 KRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFP 176          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.014e-27
Identity = 62/107 (57.94%), Postives = 68/107 (63.55%), Query Frame = 1
Query:   25 RQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTVTPXXXXXXXXXXXXXXNPTPSPLPSLSQEDLFSRNN 345
            R+RKN YRGIRQRPWGKWAAEIRDPR+G R+WLGTF TAEEAARAYD  AR+IRG KAKVNFP E                       P P+P P+L Q    S  N
Sbjct:  119 RKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFPEEN--MKANSQKRSVKANLQKPVAKPNPNPSPALVQNSNISFEN 223          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.258e-27
Identity = 56/67 (83.58%), Postives = 61/67 (91.04%), Query Frame = 1
Query:   22 KRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEE 222
            KR+RKNLYRGIRQRPWGKWAAEIRDP KGVRVWLGTF TA+EAARAYD  A KIRG+KAK+NFPN +
Sbjct:   43 KRERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFPNTQ 109          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.852e-27
Identity = 57/73 (78.08%), Postives = 63/73 (86.30%), Query Frame = 1
Query:   22 KRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTVT 240
            KR+RKN YRGIRQRPWGKWAAEIRDPRKG R WLGTF+TAEEAARAYD  AR+IRG KAKVNFP E++   V+
Sbjct:  121 KRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFPEEKNPSVVS 193          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 8.581e-27
Identity = 70/140 (50.00%), Postives = 84/140 (60.00%), Query Frame = 1
Query:   22 KRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTVTPXXXXXXXXXXXXXXNPTPSPLPSLSQ-EDLFSRNNSSISSVGFG--------LYG----YDLNPQI 402
            +R+RKN+YRGIR+RPWGKWAAEIRDPRKGVRVWLGTFNTAEEAA AYD  A++IRG KAK+NFP   D+    P               P    +  +SQ E   S+ +  +  +GFG         YG    YDL  QI
Sbjct:   72 RRKRKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFP---DLHHPPPPNYTPPPSSPRSTDQPPAKKVCVVSQSESELSQPSFPVECIGFGNGDEFQNLSYGFEPDYDLKQQI 208          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.761e-25
Identity = 51/66 (77.27%), Postives = 61/66 (92.42%), Query Frame = 1
Query:   22 KRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNE 219
            K+++ + Y+GIR+RPWG+WAAEIRDP KGVRVWLGTFNTAEEAARAYD EA++IRG KAK+NFPNE
Sbjct:   18 KKKQSSRYKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNFPNE 83          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.675e-22
Identity = 49/73 (67.12%), Postives = 58/73 (79.45%), Query Frame = 1
Query:   25 RQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTVTP 243
            R++K  YRG+RQRPWGKWAAEIRDP +  RVWLGTF+TAE AARAYD+ A + RG KAK+NFP  EDV  + P
Sbjct:   71 REKKRRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFP--EDVRILPP 141          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.187e-22
Identity = 51/93 (54.84%), Postives = 58/93 (62.37%), Query Frame = 1
Query:   31 RKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTVTPXXXXXXXXXXXXXXNPTPSPLP 309
            R+  YRG+RQRPWGKWAAEIRDP+K  RVWLGTF TAEEAA AYD+ A K +G KAK+NFP      T T               +P P P P
Sbjct:   35 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFPERVQGPTTTTTISHAPRGVSESMNSPPPRPGP 127          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.158e-21
Identity = 46/70 (65.71%), Postives = 51/70 (72.86%), Query Frame = 1
Query:   28 QRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTV 237
            +R   YRG+RQRPWGKWAAEIRDP K  RVWLGTF TAE AARAYD  A + RG KAK+NFP      T+
Sbjct:   56 ERPKKYRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFPENVGTQTI 125          
BLAST of CF836286 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.158e-21
Identity = 46/61 (75.41%), Postives = 51/61 (83.61%), Query Frame = 1
Query:   31 RKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 213
            R+  YRG+RQRPWGKWAAEIRDP K  RVWLGTF+TAEEAA AYDK A + RG KAK+NFP
Sbjct:   66 RQRNYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFP 126          
The following BLAST results are available for this feature:
BLAST of CF836286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
ERF1_ORYSJ1.197e-2890.63Ethylene-responsive transcription factor 1 OS=Oryz... [more]
RA212_ARATH1.014e-2757.94Ethylene-responsive transcription factor RAP2-12 O... [more]
ERF71_ARATH2.258e-2783.58Ethylene-responsive transcription factor ERF071 OS... [more]
RAP22_ARATH3.852e-2778.08Ethylene-responsive transcription factor RAP2-2 OS... [more]
RAP23_ARATH8.581e-2750.00Ethylene-responsive transcription factor RAP2-3 OS... [more]
ERF73_ARATH2.761e-2577.27Ethylene-responsive transcription factor ERF073 OS... [more]
EF110_ARATH1.675e-2267.12Ethylene-responsive transcription factor ERF110 OS... [more]
EF113_ARATH2.187e-2254.84Ethylene-responsive transcription factor ERF113 OS... [more]
RAP26_ARATH3.158e-2165.71Ethylene-responsive transcription factor RAP2-6 OS... [more]
EF112_ARATH3.158e-2175.41Ethylene-responsive transcription factor ERF112 OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02L15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836286 ID=CF836286; Name=CF836286; organism=Citrus sinensis; type=EST; length=711bp
TTCAGGTGATCAATAAAGCCCAAGAGGCAGAGGAAGAATCTCTACAGGGG
AATAAGGCAACGCCCCTGGGGCAAATGGGCAGCTGAGATTCGTGACCCAA
GGAAAGGAGTTCGAGTCTGGCTCGGCACATTCAACACTGCCGAAGAAGCA
GCTCGAGCCTATGACAAAGAAGCCCGCAAGATTCGCGGCAAGAAAGCCAA
AGTCAACTTCCCCAACGAAGAGGACGTCTTCACCGTCACCCCTGCTGCTG
CCGCCCATGCTTACCATCATCATCAGCATAATCATAATCCCACTCCCAGT
CCCCTTCCTTCTCTTTCCCAAGAAGATCTTTTTAGTCGTAATAACTCATC
TATAAGTAGTGTTGGTTTTGGCTTGTATGGTTATGATCTGAACCCCCAGA
TTGTTACTTCTGGTGGTGACGAGAATTCCGGGACTGGTTCTGGTTCTGTT
TCAGAAGGTGGGTACGATTCCACAGAACTTATGCTGAATTGCAACCAGAA
TGTCAATGATGGTTCGTTTGCTCAAATGAAGGTGAAAGCCGAAGAACAAG
AAAAAGAAGAAAAGCGAAAAGCTGAAGAGGAAGAGAACGAAGTGCGAAAG
CTGTCTGAGGAGCTTATGGCGTACGAGAATTTCATGAAGTTCTATCAGCT
TCCGTATCTCGATGGGCAATCACCAGTGTCTAATAATAATAATAATAATA
TTAATATTAAT
back to top