CF836295

Overview
NameCF836295
Unique NameCF836295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length462
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF_DUGJA (ADP-ribosylation factor OS=Dugesia japonica PE=2 SV=3)

HSP 1 Score: 178.718 bits (452), Expect = 1.044e-44
Identity = 82/145 (56.55%), Postives = 110/145 (75.86%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTL 435
            IL K  +GE+++T+PTIGFN E V+YKN+ FT WDVGG +K+RPLWRHYF NT GLI+V DS DRER+ +A++E   ++ +  + ++V+LVFANKQD+  AM P E+ + L L  L+NR WYIQ TCA  G GLY GLDW+++TL
Sbjct:   33 ILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTL 177          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF1_CHLRE (ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 3.039e-44
Identity = 81/145 (55.86%), Postives = 108/145 (74.48%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTL 435
            IL K  +GE+++T+PTIGFN E V+YKN+ FT WDVGG +K+RPLWRHYF NT GLI+V DS DRER+V+A+ E H ++ +  + ++V+LVFANKQD+  AM   E+ + L L  L+ R WYIQ TCA  G GLY GLDW+++ L
Sbjct:   33 ILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNL 177          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF2_ORYSJ (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 5.184e-44
Identity = 80/145 (55.17%), Postives = 108/145 (74.48%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTL 435
            IL K  +GE+++T+PTIGFN E V+YKN+ FT WDVGG +K+RPLWRHYF NT GLI+V DS DRER+V+A+ E H ++ +  + ++V+LVFANKQD+  AM   E+ + L L  L+ R WYIQ TCA  G GLY GLDW+++ +
Sbjct:   33 ILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF1_ORYSJ (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 5.184e-44
Identity = 80/145 (55.17%), Postives = 108/145 (74.48%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTL 435
            IL K  +GE+++T+PTIGFN E V+YKN+ FT WDVGG +K+RPLWRHYF NT GLI+V DS DRER+V+A+ E H ++ +  + ++V+LVFANKQD+  AM   E+ + L L  L+ R WYIQ TCA  G GLY GLDW+++ +
Sbjct:   33 ILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF_MAIZE (ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 6.770e-44
Identity = 80/145 (55.17%), Postives = 108/145 (74.48%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTL 435
            IL K  +GE+++T+PTIGFN E V+YKN+ FT WDVGG +K+RPLWRHYF NT GLI+V DS DR+R+V+A+ E H ++ +  + ++V+LVFANKQD+  AM   E+ + L L  L+ R WYIQ TCA  G GLY GLDW++S +
Sbjct:   33 ILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLNSLRQRHWYIQSTCATTGEGLYEGLDWLSSNI 177          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF2_ARATH (ADP-ribosylation factor 2 OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 1.155e-43
Identity = 79/145 (54.48%), Postives = 108/145 (74.48%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTL 435
            IL K  +GE+++T+PTIGFN E V+YKN+ FT WDVGG +K+RPLWRHYF NT GLI+V DS DR+R+V+A+ E H ++ +  + ++V+LVFANKQD+  AM   E+ + L L  L+ R WYIQ TCA  G GLY GLDW+++ +
Sbjct:   33 ILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF1_DAUCA (ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 1.155e-43
Identity = 79/145 (54.48%), Postives = 108/145 (74.48%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTL 435
            IL K  +GE+++T+PTIGFN E V+YKN+ FT WDVGG +K+RPLWRHYF NT GLI+V DS DR+R+V+A+ E H ++ +  + ++V+LVFANKQD+  AM   E+ + L L  L+ R WYIQ TCA  G GLY GLDW+++ +
Sbjct:   33 ILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIIDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF1_ARATH (ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 1.155e-43
Identity = 79/145 (54.48%), Postives = 108/145 (74.48%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTL 435
            IL K  +GE+++T+PTIGFN E V+YKN+ FT WDVGG +K+RPLWRHYF NT GLI+V DS DR+R+V+A+ E H ++ +  + ++V+LVFANKQD+  AM   E+ + L L  L+ R WYIQ TCA  G GLY GLDW+++ +
Sbjct:   33 ILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF2_DROME (ADP-ribosylation factor 2 OS=Drosophila melanogaster GN=Arf102F PE=1 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 2.573e-43
Identity = 80/145 (55.17%), Postives = 111/145 (76.55%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTL 435
            IL K  +GE+++T+PTIGFN E V+YKN+ FT WDVGG +K+RPLWRHYF NT GLI+V DS DR+RI +A++E   ++++  + ++V+LVFANKQD+  AMT  E+ + L L  L+NR W+IQ TCA  G+GLY GLDW+++ L
Sbjct:   33 ILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRITEAERELQNMLQEDELRDAVLLVFANKQDLPNAMTAAELTDKLRLNQLRNRHWFIQSTCATQGHGLYEGLDWLSAEL 177          
BLAST of CF836295 vs. ExPASy Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3)

HSP 1 Score: 173.711 bits (439), Expect = 3.360e-43
Identity = 78/145 (53.79%), Postives = 108/145 (74.48%), Query Frame = 1
Query:    1 ILXKPFIGEVLSTVPTIGFNDEKVQYKNVIFTDWDVGGTEKLRPLWRHYFNNTDGLIYVDDSLDRERIVKAKQEFHAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL*LFDLKNRKWYIQGTCALIGYGLY*GLDWMASTL 435
            IL K  +GE+++T+PTIGFN E V+YKN+ FT WDVGG +K+RPLWRHYF NT GLI+V DS DR+R+V+A+ E H ++ +  + ++V+LVFANKQD+  AM   E+ + L L  L+ R WYIQ TCA  G GLY GL+W+++ +
Sbjct:   33 ILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLEWLSNNI 177          
The following BLAST results are available for this feature:
BLAST of CF836295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
ARF_DUGJA1.044e-4456.55ADP-ribosylation factor OS=Dugesia japonica PE=2 S... [more]
ARF1_CHLRE3.039e-4455.86ADP-ribosylation factor 1 OS=Chlamydomonas reinhar... [more]
ARF2_ORYSJ5.184e-4455.17ADP-ribosylation factor 2 OS=Oryza sativa subsp. j... [more]
ARF1_ORYSJ5.184e-4455.17ADP-ribosylation factor 1 OS=Oryza sativa subsp. j... [more]
ARF_MAIZE6.770e-4455.17ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 S... [more]
ARF2_ARATH1.155e-4354.48ADP-ribosylation factor 2 OS=Arabidopsis thaliana ... [more]
ARF1_DAUCA1.155e-4354.48ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1... [more]
ARF1_ARATH1.155e-4354.48ADP-ribosylation factor 1 OS=Arabidopsis thaliana ... [more]
ARF2_DROME2.573e-4355.17ADP-ribosylation factor 2 OS=Drosophila melanogast... [more]
ARF_VIGUN3.360e-4353.79ADP-ribosylation factor OS=Vigna unguiculata GN=AR... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02L21_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836295 ID=CF836295; Name=CF836295; organism=Citrus sinensis; type=EST; length=462bp
ATACTGNACAAGCCCTTCATTGGTGAAGTTTTATCTACTGTTCCTACTAT
TGGTTTTAATGACGAGAAAGTTCAGTATAAGAATGTCATATTCACTGATT
GGGATGTTGGCGGAACAGAGAAATTGAGGCCACTATGGAGGCATTATTTT
AATAACACTGATGGACTGATCTATGTTGATGACTCCTTGGACCGGGAGAG
AATTGTTAAAGCAAAGCAAGAATTTCATGCCATTATCAAAGATCCTTTTA
TGCTGAACAGCGTCATTTTGGTGTTTGCCAATAAACAGGACATGAAAGGA
GCAATGACCCCAATGGAAGTATGTGAAGGATTATGACTCTTTGATCTCAA
GAACAGGAAATGGTATATTCAAGGGACTTGTGCACTTATAGGATATGGAC
TTTACTAAGGCTTGGATTGGATGGCTTCAACACTTAACGAGATGAGAGCT
GCTGGATACTCT
back to top