CF836345
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF836345 vs. ExPASy Swiss-Prot
Match: VTI13_ARATH (Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2 SV=1) HSP 1 Score: 242.276 bits (617), Expect = 2.083e-63 Identity = 125/189 (66.14%), Postives = 148/189 (78.31%), Query Frame = -2 Query: 171 RKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXLHAHNTLHGVDDNVGKSKKVLTAMSRRMSRNKWIIGTXXXXXXXXXXXXLYFKLAK 737 +KKQ +SEI++G++EAE+L++KMDLEAR+L PNVK+ LL KLREYKSDLNN K+EVKR+ SGNLNA ARDELLE+GMAD LTASADQRSRLMMST+ + ++TDRIKDSRRT+LETEELGV L AH TLHGVDDNVGKSKK+LT M+RRM+RNKW IG LYFKL + Sbjct: 33 QKKQNLSEIKSGVEEAEALVKKMDLEARNLPPNVKSSLLVKLREYKSDLNNFKTEVKRITSGNLNATARDELLEAGMADTLTASADQRSRLMMSTDHLGRTTDRIKDSRRTILETEELGVSILQDLHGQRQSLLRAHETLHGVDDNVGKSKKILTTMTRRMNRNKWTIGAIITVLVLAIIFILYFKLTR 221
BLAST of CF836345 vs. ExPASy Swiss-Prot
Match: VTI11_ARATH (Vesicle transport v-SNARE 11 OS=Arabidopsis thaliana GN=VTI11 PE=1 SV=2) HSP 1 Score: 238.424 bits (607), Expect = 3.007e-62 Identity = 123/189 (65.08%), Postives = 147/189 (77.78%), Query Frame = -2 Query: 171 RKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXLHAHNTLHGVDDNVGKSKKVLTAMSRRMSRNKWIIGTXXXXXXXXXXXXLYFKLAK 737 +KKQK+SEI++GL+ AE LIRKMDLEAR+L PN+K+ LL KLRE+KSDLNN K+EVKR+ SG LNAAARDELLE+GMAD TASADQR+RLMMSTER+ ++TDR+KDSRRTM+ETEE+GV L AH TLHGVDDN+GKSKK+LT M+RRM++NKW IG LYFKL K Sbjct: 33 QKKQKLSEIKSGLENAEVLIRKMDLEARTLPPNLKSSLLVKLREFKSDLNNFKTEVKRITSGQLNAAARDELLEAGMADTKTASADQRARLMMSTERLGRTTDRVKDSRRTMMETEEIGVSILQDLHGQRQSLLRAHETLHGVDDNIGKSKKILTDMTRRMNKNKWTIGAIIIALIAAIFIILYFKLTK 221
BLAST of CF836345 vs. ExPASy Swiss-Prot
Match: VTI12_ARATH (Vesicle transport v-SNARE 12 OS=Arabidopsis thaliana GN=VTI12 PE=1 SV=3) HSP 1 Score: 209.92 bits (533), Expect = 1.145e-53 Identity = 108/167 (64.67%), Postives = 131/167 (78.44%), Query Frame = -2 Query: 234 KKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXLHAHNTLHGVDDNVGKSKKVLTAMSRRMSRNKWII 734 KK K++EI++G+DEA+ LIRKMDLEARSLQP+ KAV L+KLREYKSDLN LK E KR+ S + ++R+EL+ESGMAD SADQR RL MS ER++QS+DRI++SRR MLETEE+G+ LHAHN LHGVDD + KSKKVLTAMSRRM+RNKWII Sbjct: 35 KKGKIAEIKSGIDEADVLIRKMDLEARSLQPSAKAVCLSKLREYKSDLNQLKKEFKRVSSADAKPSSREELMESGMADLHAVSADQRGRLAMSVERLDQSSDRIRESRRLMLETEEVGISIVQDLSQQRQTLLHAHNKLHGVDDAIDKSKKVLTAMSRRMTRNKWII 201
BLAST of CF836345 vs. ExPASy Swiss-Prot
Match: VTI1A_MOUSE (Vesicle transport through interaction with t-SNAREs homolog 1A OS=Mus musculus GN=Vti1a PE=1 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 9.161e-19 Identity = 51/167 (30.54%), Postives = 92/167 (55.09%), Query Frame = -2 Query: 234 KKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXLHAHNTLHGVDDNVGKSKKVLTAMSRRMSRNKWII 734 KKQ V+ ++ L+EA L+ +MDLE R + P + + ++R YK ++ L+++ KR A DE+ + DA +S +QR+ L+ +TER+ +S+ R++ + +ETE++G A + L D N+GKS ++LT M RR+ +N+ ++ Sbjct: 34 KKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKR-----SRIAYSDEVRNELLGDAGNSSENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARDRLRDADANLGKSSRILTGMLRRIIQNRILL 195
BLAST of CF836345 vs. ExPASy Swiss-Prot
Match: VTI1A_HUMAN (Vesicle transport through interaction with t-SNAREs homolog 1A OS=Homo sapiens GN=VTI1A PE=1 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.565e-17 Identity = 49/159 (30.82%), Postives = 85/159 (53.46%), Query Frame = -2 Query: 258 KKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXLHAHNTLHGVDDNVGKSKKVLTAMSRR 734 KKQ V+ ++ L+EA+ L+ +MDLE R + P + + ++R YK ++ L+++ KR A DE+ + D +S +QR+ L+ +TER+ +S+ R++ + +ETE++G A L D N+GKS ++LT M RR Sbjct: 34 KKQMVANVEKQLEEAKELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKR-----SRIAYSDEVRNELLGDDGNSSENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARERLRETDANLGKSSRILTGMLRR 187
BLAST of CF836345 vs. ExPASy Swiss-Prot
Match: VTI1A_RAT (Vesicle transport through interaction with t-SNAREs homolog 1A OS=Rattus norvegicus GN=Vti1a PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.910e-16 Identity = 51/174 (29.31%), Postives = 91/174 (52.30%), Query Frame = -2 Query: 234 KKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQ-------RSRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXLHAHNTLHGVDDNVGKSKKVLTAMSRRMSRNKWII 734 KKQ V+ ++ L+EA L+ +MDLE R + P + + ++R YK ++ L+++ KR A DE+ + DA +S +Q R+ L+ +TER+ +S+ R++ + +ETE++G A L D N+GKS ++LT M RR+ +N+ ++ Sbjct: 34 KKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKR-----SRIAYSDEVRNELLGDAGNSSENQLIKLREERAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRIIQNRILL 202
BLAST of CF836345 vs. ExPASy Swiss-Prot
Match: VTI1_YEAST (t-SNARE VTI1 OS=Saccharomyces cerevisiae GN=VTI1 PE=1 SV=3) HSP 1 Score: 69.707 bits (169), Expect = 1.850e-11 Identity = 50/169 (29.59%), Postives = 83/169 (49.11%), Query Frame = -2 Query: 237 RKKQKVSEIQTGLDEAESLIRKMDLEARSL--QPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXLHAHNTLHGVDDNVGKSKKVLTAMSRRMSRNKWI 737 ++ + ++ DE L+ +MD+E + + +A AKLRE+K ++S++KR + +++ RD L G +A DQR +L+ + + +S DR+KD+ R ETE +G +A TL D V KS K L M+RR+ NK+I Sbjct: 33 QRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKK---TIQSDIKRPLQSLVDSGDRDRLF--GDLNASNIDDDQRQQLLSNHAILQKSGDRLKDASRIANETEGIGSQIMMDLRSQRETLENARQTLFQADSYVDKSIKTLKTMTRRLVANKFI 196
BLAST of CF836345 vs. ExPASy Swiss-Prot
Match: VTI1B_MOUSE (Vesicle transport through interaction with t-SNAREs homolog 1B OS=Mus musculus GN=Vti1b PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.182e-11 Identity = 50/190 (26.32%), Postives = 85/190 (44.74%), Query Frame = -2 Query: 180 KKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAA--ARDELLESGMA---DALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXLHAHNTLHGVDDNVGKSKKVLTAMSRRMSRNKWIIGTXXXXXXXXXXXXLYFK 734 KK+ V + EA + +M+ E R + +++KLR Y+ DL L EV+ S L AA R +L + L QR+ L+ TE +N++T I+ S R ET+++G + L ++N+ KS+K+L +MSR++ NK ++ +Y+K Sbjct: 41 KKKLVRDFDENQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHREVR---STPLTAAPGGRGDLKYGTYTLENEHLNRLQSQRALLLQGTESLNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSRKVITNKLLLSVIILLELAILVGLVYYK 227 The following BLAST results are available for this feature:
BLAST of CF836345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF836345 ID=CF836345; Name=CF836345; organism=Citrus sinensis; type=EST; length=738bpback to top |