CF836345

Overview
NameCF836345
Unique NameCF836345
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836345_ssr51 microsatellite CF836345_ssr51:51..62. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF836345 vs. ExPASy Swiss-Prot
Match: VTI13_ARATH (Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.083e-63
Identity = 125/189 (66.14%), Postives = 148/189 (78.31%), Query Frame = -2
Query:  171 RKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXLHAHNTLHGVDDNVGKSKKVLTAMSRRMSRNKWIIGTXXXXXXXXXXXXLYFKLAK 737
            +KKQ +SEI++G++EAE+L++KMDLEAR+L PNVK+ LL KLREYKSDLNN K+EVKR+ SGNLNA ARDELLE+GMAD LTASADQRSRLMMST+ + ++TDRIKDSRRT+LETEELGV             L AH TLHGVDDNVGKSKK+LT M+RRM+RNKW IG             LYFKL +
Sbjct:   33 QKKQNLSEIKSGVEEAEALVKKMDLEARNLPPNVKSSLLVKLREYKSDLNNFKTEVKRITSGNLNATARDELLEAGMADTLTASADQRSRLMMSTDHLGRTTDRIKDSRRTILETEELGVSILQDLHGQRQSLLRAHETLHGVDDNVGKSKKILTTMTRRMNRNKWTIGAIITVLVLAIIFILYFKLTR 221          
BLAST of CF836345 vs. ExPASy Swiss-Prot
Match: VTI11_ARATH (Vesicle transport v-SNARE 11 OS=Arabidopsis thaliana GN=VTI11 PE=1 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 3.007e-62
Identity = 123/189 (65.08%), Postives = 147/189 (77.78%), Query Frame = -2
Query:  171 RKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXLHAHNTLHGVDDNVGKSKKVLTAMSRRMSRNKWIIGTXXXXXXXXXXXXLYFKLAK 737
            +KKQK+SEI++GL+ AE LIRKMDLEAR+L PN+K+ LL KLRE+KSDLNN K+EVKR+ SG LNAAARDELLE+GMAD  TASADQR+RLMMSTER+ ++TDR+KDSRRTM+ETEE+GV             L AH TLHGVDDN+GKSKK+LT M+RRM++NKW IG             LYFKL K
Sbjct:   33 QKKQKLSEIKSGLENAEVLIRKMDLEARTLPPNLKSSLLVKLREFKSDLNNFKTEVKRITSGQLNAAARDELLEAGMADTKTASADQRARLMMSTERLGRTTDRVKDSRRTMMETEEIGVSILQDLHGQRQSLLRAHETLHGVDDNIGKSKKILTDMTRRMNKNKWTIGAIIIALIAAIFIILYFKLTK 221          
BLAST of CF836345 vs. ExPASy Swiss-Prot
Match: VTI12_ARATH (Vesicle transport v-SNARE 12 OS=Arabidopsis thaliana GN=VTI12 PE=1 SV=3)

HSP 1 Score: 209.92 bits (533), Expect = 1.145e-53
Identity = 108/167 (64.67%), Postives = 131/167 (78.44%), Query Frame = -2
Query:  234 KKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXLHAHNTLHGVDDNVGKSKKVLTAMSRRMSRNKWII 734
            KK K++EI++G+DEA+ LIRKMDLEARSLQP+ KAV L+KLREYKSDLN LK E KR+ S +   ++R+EL+ESGMAD    SADQR RL MS ER++QS+DRI++SRR MLETEE+G+             LHAHN LHGVDD + KSKKVLTAMSRRM+RNKWII
Sbjct:   35 KKGKIAEIKSGIDEADVLIRKMDLEARSLQPSAKAVCLSKLREYKSDLNQLKKEFKRVSSADAKPSSREELMESGMADLHAVSADQRGRLAMSVERLDQSSDRIRESRRLMLETEEVGISIVQDLSQQRQTLLHAHNKLHGVDDAIDKSKKVLTAMSRRMTRNKWII 201          
BLAST of CF836345 vs. ExPASy Swiss-Prot
Match: VTI1A_MOUSE (Vesicle transport through interaction with t-SNAREs homolog 1A OS=Mus musculus GN=Vti1a PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.161e-19
Identity = 51/167 (30.54%), Postives = 92/167 (55.09%), Query Frame = -2
Query:  234 KKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXLHAHNTLHGVDDNVGKSKKVLTAMSRRMSRNKWII 734
            KKQ V+ ++  L+EA  L+ +MDLE R + P  + +   ++R YK ++  L+++ KR        A  DE+    + DA  +S +QR+ L+ +TER+ +S+ R++   +  +ETE++G                A + L   D N+GKS ++LT M RR+ +N+ ++
Sbjct:   34 KKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKR-----SRIAYSDEVRNELLGDAGNSSENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARDRLRDADANLGKSSRILTGMLRRIIQNRILL 195          
BLAST of CF836345 vs. ExPASy Swiss-Prot
Match: VTI1A_HUMAN (Vesicle transport through interaction with t-SNAREs homolog 1A OS=Homo sapiens GN=VTI1A PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.565e-17
Identity = 49/159 (30.82%), Postives = 85/159 (53.46%), Query Frame = -2
Query:  258 KKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXLHAHNTLHGVDDNVGKSKKVLTAMSRR 734
            KKQ V+ ++  L+EA+ L+ +MDLE R + P  + +   ++R YK ++  L+++ KR        A  DE+    + D   +S +QR+ L+ +TER+ +S+ R++   +  +ETE++G                A   L   D N+GKS ++LT M RR
Sbjct:   34 KKQMVANVEKQLEEAKELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKR-----SRIAYSDEVRNELLGDDGNSSENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARERLRETDANLGKSSRILTGMLRR 187          
BLAST of CF836345 vs. ExPASy Swiss-Prot
Match: VTI1A_RAT (Vesicle transport through interaction with t-SNAREs homolog 1A OS=Rattus norvegicus GN=Vti1a PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.910e-16
Identity = 51/174 (29.31%), Postives = 91/174 (52.30%), Query Frame = -2
Query:  234 KKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQ-------RSRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXLHAHNTLHGVDDNVGKSKKVLTAMSRRMSRNKWII 734
            KKQ V+ ++  L+EA  L+ +MDLE R + P  + +   ++R YK ++  L+++ KR        A  DE+    + DA  +S +Q       R+ L+ +TER+ +S+ R++   +  +ETE++G                A   L   D N+GKS ++LT M RR+ +N+ ++
Sbjct:   34 KKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKR-----SRIAYSDEVRNELLGDAGNSSENQLIKLREERAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRIIQNRILL 202          
BLAST of CF836345 vs. ExPASy Swiss-Prot
Match: VTI1_YEAST (t-SNARE VTI1 OS=Saccharomyces cerevisiae GN=VTI1 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.850e-11
Identity = 50/169 (29.59%), Postives = 83/169 (49.11%), Query Frame = -2
Query:  237 RKKQKVSEIQTGLDEAESLIRKMDLEARSL--QPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXLHAHNTLHGVDDNVGKSKKVLTAMSRRMSRNKWI 737
            ++   +  ++   DE   L+ +MD+E  +     + +A   AKLRE+K     ++S++KR +   +++  RD L   G  +A     DQR +L+ +   + +S DR+KD+ R   ETE +G               +A  TL   D  V KS K L  M+RR+  NK+I
Sbjct:   33 QRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKK---TIQSDIKRPLQSLVDSGDRDRLF--GDLNASNIDDDQRQQLLSNHAILQKSGDRLKDASRIANETEGIGSQIMMDLRSQRETLENARQTLFQADSYVDKSIKTLKTMTRRLVANKFI 196          
BLAST of CF836345 vs. ExPASy Swiss-Prot
Match: VTI1B_MOUSE (Vesicle transport through interaction with t-SNAREs homolog 1B OS=Mus musculus GN=Vti1b PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.182e-11
Identity = 50/190 (26.32%), Postives = 85/190 (44.74%), Query Frame = -2
Query:  180 KKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAA--ARDELLESGMA---DALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXLHAHNTLHGVDDNVGKSKKVLTAMSRRMSRNKWIIGTXXXXXXXXXXXXLYFK 734
            KK+ V +      EA   + +M+ E R      +  +++KLR Y+ DL  L  EV+   S  L AA   R +L         + L     QR+ L+  TE +N++T  I+ S R   ET+++G                  + L   ++N+ KS+K+L +MSR++  NK ++              +Y+K
Sbjct:   41 KKKLVRDFDENQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHREVR---STPLTAAPGGRGDLKYGTYTLENEHLNRLQSQRALLLQGTESLNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSRKVITNKLLLSVIILLELAILVGLVYYK 227          
The following BLAST results are available for this feature:
BLAST of CF836345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
VTI13_ARATH2.083e-6366.14Vesicle transport v-SNARE 13 OS=Arabidopsis thalia... [more]
VTI11_ARATH3.007e-6265.08Vesicle transport v-SNARE 11 OS=Arabidopsis thalia... [more]
VTI12_ARATH1.145e-5364.67Vesicle transport v-SNARE 12 OS=Arabidopsis thalia... [more]
VTI1A_MOUSE9.161e-1930.54Vesicle transport through interaction with t-SNARE... [more]
VTI1A_HUMAN6.565e-1730.82Vesicle transport through interaction with t-SNARE... [more]
VTI1A_RAT1.910e-1629.31Vesicle transport through interaction with t-SNARE... [more]
VTI1_YEAST1.850e-1129.59t-SNARE VTI1 OS=Saccharomyces cerevisiae GN=VTI1 P... [more]
VTI1B_MOUSE9.182e-1126.32Vesicle transport through interaction with t-SNARE... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02N02_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02N02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836345 ID=CF836345; Name=CF836345; organism=Citrus sinensis; type=EST; length=738bp
TTTTTTTTTTTTTGGACAACAAGAGGTTGCTTTACTTTTGCACCCAAAGG
CAAACAAACAAAAAGAACTGGCAACACAACAAAATGTTAAATGAGAAATA
TAAAAGGAAAAAATTTAAGCGTTTGAGCTTTGAAGAACACCCACAATCCA
ATGAGAAAGCATCTTGTCTATTTAGCAAGTTTGAAGTACAAAATCAAGAT
GATTGCAATAACGAGAACTGCAACAACGGTACCAATAATCCACTTGTTCC
TGCTCATCCTTCTTGACATGGCCGTTAAAACTTTCTTACTCTTGCCAACG
TTATCATCCACTCCATGAAGTGTATTATGAGCATGCAAAAGAGATTGTCT
TTGTGAACTCAGATCTTGAAGAATTGAAACACCAAGCTCTTCTGTTTCCA
GCATGGTTCTTCTACTATCTTTAATTCTATCAGTGGACTGATTTACCCTT
TCCGTTGACATCATTAACCTTGACCTTTGATCAGCTGATGCCGTCAAAGC
GTCGGCCATTCCTGATTCCAATAACTCATCTCGAGCAGCGGCATTCAAAT
TTCCAGAAACAAGTCTTTTAACTTCACTTTTCAGATTGTTTAAATCTGAT
TTATACTCCCTTAACTTAGCTAGAAGTACAGCCTTAACATTTGGCTGCAA
ACTTCTTGCCTCAAGGTCCATTTTCCGTATCAAAGATTCAGCCTCATCCA
ATCCAGTTTGAATTTCAGATACTTTTTGCTTCTTCCTT
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