CF836347

Overview
NameCF836347
Unique NameCF836347
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836347 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.280e-66
Identity = 127/185 (68.65%), Postives = 149/185 (80.54%), Query Frame = -3
Query:  238 LAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQVIDINSEGQKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 792
            LAGDALLA+AFEHIA  TKGVS  RIVR + ELAK IG++GLVAGQV+D+ SEG  D+G+EHLEFIH HKT                  D ++ KLR FARCIGLLFQVVDDILD+TKSS+ELGKTAGKDLVADK+TYPKLLGI++S++ A+KLN++AQ+QL+EFD EKA PLIALANYIAYR N
Sbjct:  173 LAGDALLAFAFEHIATATKGVSSERIVRVVGELAKCIGSEGLVAGQVVDVCSEGIADVGLEHLEFIHIHKTAALLEGSVVLGAIVGGANDEQISKLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIDKSREFAEKLNREAQEQLAEFDPEKAAPLIALANYIAYRDN 357          
BLAST of CF836347 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.131e-65
Identity = 132/185 (71.35%), Postives = 151/185 (81.62%), Query Frame = -3
Query:  238 LAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQVIDINSEGQKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 792
            LAGDALLA+AFEHIAV T  VS ARIVRA+ ELAK IGA+GLVAGQV+DINSEG  ++ +E LEFIH HKT                GTD EVEKLR +AR IGLLFQVVDDILD+TKSS+ELGKTAGKDLVADK+TYPKLLGIE+S++ A+KLNK+AQ+QL+ FD EKA PLIALANYIA+RQN
Sbjct:  186 LAGDALLAFAFEHIAVSTLNVSSARIVRAVGELAKAIGAEGLVAGQVVDINSEGSSEVDLEKLEFIHIHKTAKLLEGAVVLGAILGGGTDEEVEKLRKYARDIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEKSREFAEKLNKEAQEQLAGFDPEKAAPLIALANYIAHRQN 370          
BLAST of CF836347 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2)

HSP 1 Score: 238.81 bits (608), Expect = 2.608e-62
Identity = 122/189 (64.55%), Postives = 150/189 (79.37%), Query Frame = -3
Query:  238 LAGDALLAYAFEHIAVCTKG--VSPARIVRAIAELAKYIGADGLVAGQVIDINSEGQ--KDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 792
            LAGDALL++AFEH+A  T    VSP R+VRA+ ELAK IG +GLVAGQV+DI+SEG    D+G+EHLEFIH HKT                G+D+E+E+LR FARCIGLLFQVVDDILD+TKSSKELGKTAGKDL+ADKLTYPK++G+E+S++ A+KLN++A+ QL  FD +K  PL+ALANYIAYRQN
Sbjct:  183 LAGDALLSFAFEHLASATSSDVVSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKTAALLEASAVLGAIVGGGSDDEIERLRKFARCIGLLFQVVDDILDVTKSSKELGKTAGKDLIADKLTYPKIMGLEKSREFAEKLNREARDQLLGFDSDKVAPLLALANYIAYRQN 371          
BLAST of CF836347 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 4.164e-60
Identity = 120/188 (63.83%), Postives = 148/188 (78.72%), Query Frame = -3
Query:  238 LAGDALLAYAFEHIAVCTKG-VSPARIVRAIAELAKYIGADGLVAGQVIDINSEGQ--KDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 792
            LAGDALL++AFEH+A  T   VSPAR+VRA+ ELAK IG +GLVAGQV+DI+SEG    ++G+EHL+FIH HKT                G+D E+E+LR FARCIGLLFQVVDDILD+TKSS+ELGKTAGKDL+ADKLTYPKL+G+E+S++ A+KLN +A+ QL  FD +K  PL+ALANYIA RQN
Sbjct:  179 LAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLIADKLTYPKLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYIANRQN 366          
BLAST of CF836347 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 6.013e-59
Identity = 120/185 (64.86%), Postives = 140/185 (75.68%), Query Frame = -3
Query:  238 LAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQVIDINSEGQKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 792
            LAGD+LLA+AFEHI   T GV+P+RIV A+AELAK IG +GLVAGQV DI   G   + +E LEFIH HKT                GT+ EVEKLR FARCIGLLFQVVDDILD+TKSS+ELGKTAGKDLV DK TYPKLLG+E++K+ A +LN++A+QQL  FD  KA PLIALA+YIAYR N
Sbjct:  185 LAGDSLLAFAFEHIVNSTAGVTPSRIVGAVAELAKSIGTEGLVAGQVADIKCTGNASVSLETLEFIHVHKTAALLESSVVLGAILGGGTNVEVEKLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLVVDKTTYPKLLGLEKAKEFAAELNREAKQQLEGFDSRKAAPLIALADYIAYRDN 369          
BLAST of CF836347 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.614e-54
Identity = 111/188 (59.04%), Postives = 142/188 (75.53%), Query Frame = -3
Query:  238 LAGDALLAYAFEHIAVCTKG-VSPARIVRAIAELAKYIGADGLVAGQVIDINSE--GQKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 792
            LAGDALLA AFEH+ V + G V+P R++RA+ ELA+ IG  GLVAGQ+ID+ SE      +G+EHLEFIH HKT                GT+ E+EKLR +ARCIGLLFQVVDDILD+TKS++ELGKTAGKD++A KLTYP+L+G+E SK++A+KL ++A++QL  FD  KA PL+ALA+YIA R N
Sbjct:  173 LAGDALLALAFEHMTVVSSGLVAPERMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEAAAVLGVIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTYPRLIGLERSKEVAEKLRREAEEQLLGFDPSKAAPLVALASYIACRHN 360          
BLAST of CF836347 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.102e-50
Identity = 107/187 (57.22%), Postives = 133/187 (71.12%), Query Frame = -3
Query:  238 LAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQVIDINSEG--QKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 792
            L+G ALLA AFEH+      VS  ++VRA+ ELAK IG  GLVAGQ  D++SEG  Q D+G+E LE+IH HKT                GT+ E+EK+R FARCIGLLFQVVDDILD TKSS+ELGKTAGKD VA KLTYPK++G+E+SK+  +KL +DA++ L  FD +K  PLIAL N+IA R +
Sbjct:  188 LSGGALLALAFEHLTEAD--VSSKKMVRAVKELAKSIGTKGLVAGQAKDLSSEGLEQNDVGLEDLEYIHVHKTGSLLEASAVIGAVIGGGTEKEIEKVRNFARCIGLLFQVVDDILDETKSSEELGKTAGKDKVAGKLTYPKVIGVEKSKEFVEKLKRDAREHLQGFDSDKVKPLIALTNFIANRNH 372          
BLAST of CF836347 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 6.237e-48
Identity = 104/185 (56.22%), Postives = 129/185 (69.73%), Query Frame = -3
Query:  244 LAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQVIDINSEGQ--KDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYR 792
            L+G ALL+ AFEH+   T  +S  R+V A+ ELA+ IG  GLVAGQ +DI+SEG    ++G+EHLEFIH HKT                G+D E+E +R FARCIGLLFQVVDDILD TKSS+ELGKTAGKD +A KLTYPKL+G+E+SK+   +L KDA+Q L  F  EK  PL+AL  +IA R
Sbjct:  192 LSGGALLSLAFEHMT--TAEISSERMVWAVRELARSIGTRGLVAGQAMDISSEGLDLNEVGLEHLEFIHVHKTAVLLETAAVLGAIIGGGSDEEIESVRKFARCIGLLFQVVDDILDETKSSEELGKTAGKDQLAGKLTYPKLIGLEKSKEFVKRLTKDARQHLQGFSSEKVAPLVALTTFIANR 374          
BLAST of CF836347 vs. ExPASy Swiss-Prot
Match: GGPP6_ARATH (Geranylgeranyl pyrophosphate synthetase 6, mitochondrial OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 8.723e-42
Identity = 86/190 (45.26%), Postives = 129/190 (67.89%), Query Frame = -3
Query:  238 LAGDALLAYAFEHIAVCTK-GVSPARIVRAIAELAKYIGADGLVAGQVIDINSEGQ----KDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 792
            LA +AL + A +     T  GV+  R++RA+ E+A+ +G +GLVAGQ  D+  E      +D  + +LE +H HKT                G+D E+E+L+++ARC+GL+FQV+DD+LD TKSS+ELGKTAGKDL+  KLTYPK++G++ +++ A +LN++AQ+ L  FD +K VPL++LA+YI  RQN
Sbjct:  147 LASNALRSLAVKQTLASTSLGVTSERVLRAVQEMARAVGTEGLVAGQAADLAGERMSFKNEDDELRYLELMHVHKTAVLVEAAAVVGAIMGGGSDEEIERLKSYARCVGLMFQVMDDVLDETKSSEELGKTAGKDLITGKLTYPKVMGVDNAREYAKRLNREAQEHLQGFDSDKVVPLLSLADYIVKRQN 336          
BLAST of CF836347 vs. ExPASy Swiss-Prot
Match: CRTE_CYAPA (Geranylgeranyl pyrophosphate synthetase homolog OS=Cyanophora paradoxa GN=crtE PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.904e-37
Identity = 82/185 (44.32%), Postives = 117/185 (63.24%), Query Frame = -3
Query:  238 LAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQVIDINSEGQKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 792
            LAGDALLAYAFE IA  TK V    IV+ IA++A  +   GLV GQ+ID++SEG+ D  +E L FIH HKT                  + ++ +   +A+ IGL FQ++DD+LD+  + ++LGK+ GKDL   K TYP   G+EES K A+ L ++A++++  FD  KA+PLIA+A++I  R N
Sbjct:  117 LAGDALLAYAFEFIATQTKNVPADLIVKVIAQVAHSVTTSGLVGGQIIDLSSEGKSDTTLETLNFIHIHKTGALLEAAVLSGALLAGAKEKDMNRFLRYAQNIGLAFQIIDDVLDIISTEEKLGKSIGKDLKTQKATYPSFWGVEESIKQAELLVEEAKEEILYFD-NKAIPLIAIADFIVNRNN 300          
The following BLAST results are available for this feature:
BLAST of CF836347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
GGPPS_CATRO2.280e-6668.65Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_HEVBR1.131e-6571.35Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP1_ARATH2.608e-6264.55Geranylgeranyl pyrophosphate synthetase 1, chlorop... [more]
GGPPS_SINAL4.164e-6063.83Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_CAPAN6.013e-5964.86Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP3_ARATH2.614e-5459.04Geranylgeranyl pyrophosphate synthetase 3, chlorop... [more]
GGPP4_ARATH5.102e-5057.22Geranylgeranyl pyrophosphate synthetase 4 OS=Arabi... [more]
GGPP2_ARATH6.237e-4856.22Geranylgeranyl pyrophosphate synthetase 2 OS=Arabi... [more]
GGPP6_ARATH8.723e-4245.26Geranylgeranyl pyrophosphate synthetase 6, mitocho... [more]
CRTE_CYAPA2.904e-3744.32Geranylgeranyl pyrophosphate synthetase homolog OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02N03_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02N03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836347 ID=CF836347; Name=CF836347; organism=Citrus sinensis; type=EST; length=794bp
TTTTTTTTTTTTTTATATTATAAGAATTCCATTCAAAAAGAACCTTTTAA
AGATTACAGGGGACAGGGAAATAAACAAAACCCCCTTTGACTAACCATCG
CTGAATAAGAAGAATGTTTATAAAATATTAAAAAAGCCCACCAGTTGATC
TCTCAAGATTAGGTAAGCTTAAATATACAATTACAAATCAAACGACACAC
AATTCCCCTGGAGGCATTAACCCAATTAAAAACATCAATTCTGCCTATAA
GCAATATAGTTAGCCAAAGCAATCAAAGGCACGGCCTTTTCCTGATCAAA
TTCCGACAATTGCTGTTGAGCATCTTTATTCAACTTATCAGCTAACTTCT
TCGATTCTTCGATCCCCAGCAACTTGGGATAAGTTAACTTATCGGCCACC
AAATCTTTGCCAGCAGTCTTCCCCAATTCTTTTGACGACTTGGTCAGATC
GAGGATATCATCAACTACTTGAAACAAAAGCCCAATACAGCGAGCAAAAG
TTCTCAGTTTCTCGACTTCGTTGTCAGTTCCGCCGCCCAATATGGCTCCA
AGAACAACAGCAGCCTCCAATAAAGCTGCAGTTTTGTGTTCATGTATAAA
TTCAAGATGCTCAATTCCCAAATCTTTTTGGCCTTCAGAATTGATATCAA
TAACTTGGCCGGCGACAAGTCCATCAGCTCCGATATATTTAGCCAATTCC
GCAATAGCTCTGACAATTCTTGCAGGCGAAACCCCTTTTGTACAAACAGC
GATATGTTCAAAAGCATAGGCCAAAAGCGCATCGCCGGCCAAAA
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