CF836347
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836347 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1) HSP 1 Score: 252.292 bits (643), Expect = 2.280e-66 Identity = 127/185 (68.65%), Postives = 149/185 (80.54%), Query Frame = -3 Query: 238 LAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQVIDINSEGQKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 792 LAGDALLA+AFEHIA TKGVS RIVR + ELAK IG++GLVAGQV+D+ SEG D+G+EHLEFIH HKT D ++ KLR FARCIGLLFQVVDDILD+TKSS+ELGKTAGKDLVADK+TYPKLLGI++S++ A+KLN++AQ+QL+EFD EKA PLIALANYIAYR N Sbjct: 173 LAGDALLAFAFEHIATATKGVSSERIVRVVGELAKCIGSEGLVAGQVVDVCSEGIADVGLEHLEFIHIHKTAALLEGSVVLGAIVGGANDEQISKLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIDKSREFAEKLNREAQEQLAEFDPEKAAPLIALANYIAYRDN 357
BLAST of CF836347 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1) HSP 1 Score: 249.98 bits (637), Expect = 1.131e-65 Identity = 132/185 (71.35%), Postives = 151/185 (81.62%), Query Frame = -3 Query: 238 LAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQVIDINSEGQKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 792 LAGDALLA+AFEHIAV T VS ARIVRA+ ELAK IGA+GLVAGQV+DINSEG ++ +E LEFIH HKT GTD EVEKLR +AR IGLLFQVVDDILD+TKSS+ELGKTAGKDLVADK+TYPKLLGIE+S++ A+KLNK+AQ+QL+ FD EKA PLIALANYIA+RQN Sbjct: 186 LAGDALLAFAFEHIAVSTLNVSSARIVRAVGELAKAIGAEGLVAGQVVDINSEGSSEVDLEKLEFIHIHKTAKLLEGAVVLGAILGGGTDEEVEKLRKYARDIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEKSREFAEKLNKEAQEQLAGFDPEKAAPLIALANYIAHRQN 370
BLAST of CF836347 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2) HSP 1 Score: 238.81 bits (608), Expect = 2.608e-62 Identity = 122/189 (64.55%), Postives = 150/189 (79.37%), Query Frame = -3 Query: 238 LAGDALLAYAFEHIAVCTKG--VSPARIVRAIAELAKYIGADGLVAGQVIDINSEGQ--KDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 792 LAGDALL++AFEH+A T VSP R+VRA+ ELAK IG +GLVAGQV+DI+SEG D+G+EHLEFIH HKT G+D+E+E+LR FARCIGLLFQVVDDILD+TKSSKELGKTAGKDL+ADKLTYPK++G+E+S++ A+KLN++A+ QL FD +K PL+ALANYIAYRQN Sbjct: 183 LAGDALLSFAFEHLASATSSDVVSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKTAALLEASAVLGAIVGGGSDDEIERLRKFARCIGLLFQVVDDILDVTKSSKELGKTAGKDLIADKLTYPKIMGLEKSREFAEKLNREARDQLLGFDSDKVAPLLALANYIAYRQN 371
BLAST of CF836347 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1) HSP 1 Score: 231.491 bits (589), Expect = 4.164e-60 Identity = 120/188 (63.83%), Postives = 148/188 (78.72%), Query Frame = -3 Query: 238 LAGDALLAYAFEHIAVCTKG-VSPARIVRAIAELAKYIGADGLVAGQVIDINSEGQ--KDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 792 LAGDALL++AFEH+A T VSPAR+VRA+ ELAK IG +GLVAGQV+DI+SEG ++G+EHL+FIH HKT G+D E+E+LR FARCIGLLFQVVDDILD+TKSS+ELGKTAGKDL+ADKLTYPKL+G+E+S++ A+KLN +A+ QL FD +K PL+ALANYIA RQN Sbjct: 179 LAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLIADKLTYPKLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYIANRQN 366
BLAST of CF836347 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1) HSP 1 Score: 227.639 bits (579), Expect = 6.013e-59 Identity = 120/185 (64.86%), Postives = 140/185 (75.68%), Query Frame = -3 Query: 238 LAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQVIDINSEGQKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 792 LAGD+LLA+AFEHI T GV+P+RIV A+AELAK IG +GLVAGQV DI G + +E LEFIH HKT GT+ EVEKLR FARCIGLLFQVVDDILD+TKSS+ELGKTAGKDLV DK TYPKLLG+E++K+ A +LN++A+QQL FD KA PLIALA+YIAYR N Sbjct: 185 LAGDSLLAFAFEHIVNSTAGVTPSRIVGAVAELAKSIGTEGLVAGQVADIKCTGNASVSLETLEFIHVHKTAALLESSVVLGAILGGGTNVEVEKLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLVVDKTTYPKLLGLEKAKEFAAELNREAKQQLEGFDSRKAAPLIALADYIAYRDN 369
BLAST of CF836347 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1) HSP 1 Score: 212.231 bits (539), Expect = 2.614e-54 Identity = 111/188 (59.04%), Postives = 142/188 (75.53%), Query Frame = -3 Query: 238 LAGDALLAYAFEHIAVCTKG-VSPARIVRAIAELAKYIGADGLVAGQVIDINSE--GQKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 792 LAGDALLA AFEH+ V + G V+P R++RA+ ELA+ IG GLVAGQ+ID+ SE +G+EHLEFIH HKT GT+ E+EKLR +ARCIGLLFQVVDDILD+TKS++ELGKTAGKD++A KLTYP+L+G+E SK++A+KL ++A++QL FD KA PL+ALA+YIA R N Sbjct: 173 LAGDALLALAFEHMTVVSSGLVAPERMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEAAAVLGVIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTYPRLIGLERSKEVAEKLRREAEEQLLGFDPSKAAPLVALASYIACRHN 360
BLAST of CF836347 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1) HSP 1 Score: 197.978 bits (502), Expect = 5.102e-50 Identity = 107/187 (57.22%), Postives = 133/187 (71.12%), Query Frame = -3 Query: 238 LAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQVIDINSEG--QKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 792 L+G ALLA AFEH+ VS ++VRA+ ELAK IG GLVAGQ D++SEG Q D+G+E LE+IH HKT GT+ E+EK+R FARCIGLLFQVVDDILD TKSS+ELGKTAGKD VA KLTYPK++G+E+SK+ +KL +DA++ L FD +K PLIAL N+IA R + Sbjct: 188 LSGGALLALAFEHLTEAD--VSSKKMVRAVKELAKSIGTKGLVAGQAKDLSSEGLEQNDVGLEDLEYIHVHKTGSLLEASAVIGAVIGGGTEKEIEKVRNFARCIGLLFQVVDDILDETKSSEELGKTAGKDKVAGKLTYPKVIGVEKSKEFVEKLKRDAREHLQGFDSDKVKPLIALTNFIANRNH 372
BLAST of CF836347 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2) HSP 1 Score: 191.045 bits (484), Expect = 6.237e-48 Identity = 104/185 (56.22%), Postives = 129/185 (69.73%), Query Frame = -3 Query: 244 LAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQVIDINSEGQ--KDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYR 792 L+G ALL+ AFEH+ T +S R+V A+ ELA+ IG GLVAGQ +DI+SEG ++G+EHLEFIH HKT G+D E+E +R FARCIGLLFQVVDDILD TKSS+ELGKTAGKD +A KLTYPKL+G+E+SK+ +L KDA+Q L F EK PL+AL +IA R Sbjct: 192 LSGGALLSLAFEHMT--TAEISSERMVWAVRELARSIGTRGLVAGQAMDISSEGLDLNEVGLEHLEFIHVHKTAVLLETAAVLGAIIGGGSDEEIESVRKFARCIGLLFQVVDDILDETKSSEELGKTAGKDQLAGKLTYPKLIGLEKSKEFVKRLTKDARQHLQGFSSEKVAPLVALTTFIANR 374
BLAST of CF836347 vs. ExPASy Swiss-Prot
Match: GGPP6_ARATH (Geranylgeranyl pyrophosphate synthetase 6, mitochondrial OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2) HSP 1 Score: 170.629 bits (431), Expect = 8.723e-42 Identity = 86/190 (45.26%), Postives = 129/190 (67.89%), Query Frame = -3 Query: 238 LAGDALLAYAFEHIAVCTK-GVSPARIVRAIAELAKYIGADGLVAGQVIDINSEGQ----KDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 792 LA +AL + A + T GV+ R++RA+ E+A+ +G +GLVAGQ D+ E +D + +LE +H HKT G+D E+E+L+++ARC+GL+FQV+DD+LD TKSS+ELGKTAGKDL+ KLTYPK++G++ +++ A +LN++AQ+ L FD +K VPL++LA+YI RQN Sbjct: 147 LASNALRSLAVKQTLASTSLGVTSERVLRAVQEMARAVGTEGLVAGQAADLAGERMSFKNEDDELRYLELMHVHKTAVLVEAAAVVGAIMGGGSDEEIERLKSYARCVGLMFQVMDDVLDETKSSEELGKTAGKDLITGKLTYPKVMGVDNAREYAKRLNREAQEHLQGFDSDKVVPLLSLADYIVKRQN 336
BLAST of CF836347 vs. ExPASy Swiss-Prot
Match: CRTE_CYAPA (Geranylgeranyl pyrophosphate synthetase homolog OS=Cyanophora paradoxa GN=crtE PE=3 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 2.904e-37 Identity = 82/185 (44.32%), Postives = 117/185 (63.24%), Query Frame = -3 Query: 238 LAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQVIDINSEGQKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 792 LAGDALLAYAFE IA TK V IV+ IA++A + GLV GQ+ID++SEG+ D +E L FIH HKT + ++ + +A+ IGL FQ++DD+LD+ + ++LGK+ GKDL K TYP G+EES K A+ L ++A++++ FD KA+PLIA+A++I R N Sbjct: 117 LAGDALLAYAFEFIATQTKNVPADLIVKVIAQVAHSVTTSGLVGGQIIDLSSEGKSDTTLETLNFIHIHKTGALLEAAVLSGALLAGAKEKDMNRFLRYAQNIGLAFQIIDDVLDIISTEEKLGKSIGKDLKTQKATYPSFWGVEESIKQAELLVEEAKEEILYFD-NKAIPLIAIADFIVNRNN 300 The following BLAST results are available for this feature:
BLAST of CF836347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836347 ID=CF836347; Name=CF836347; organism=Citrus sinensis; type=EST; length=794bpback to top |