CF836368

Overview
NameCF836368
Unique NameCF836368
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836368 vs. ExPASy Swiss-Prot
Match: THIE_CLONN (Thiamine-phosphate pyrophosphorylase OS=Clostridium novyi (strain NT) GN=thiE PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.049e-28
Identity = 64/125 (51.20%), Postives = 86/125 (68.80%), Query Frame = 2
Query:  293 LYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARSARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCG 667
            LY +TD       GRS+ + V+ A++GGAT++Q+REK+  TR F   A+   ++   + VPLLINDRIDIALA +ADGVHLGQSDMP   AR +LG DK+IG+S    +EA +A   GA+Y+G G
Sbjct:    7 LYLITDRSFLN--GRSLAECVEDAIKGGATLVQVREKNISTRDFYNIAREVQEVTTKYNVPLLINDRIDIALAINADGVHLGQSDMPIELARKILGDDKVIGISAGNVKEAIEAEKAGADYVGLG 129          
BLAST of CF836368 vs. ExPASy Swiss-Prot
Match: THIE_THETN (Thiamine-phosphate pyrophosphorylase OS=Thermoanaerobacter tengcongensis GN=thiE PE=3 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.625e-27
Identity = 63/128 (49.22%), Postives = 85/128 (66.41%), Query Frame = 2
Query:  284 DLFLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARSARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCG 667
            D  LYA+TD    K  G  I +AV+ A++ G T++QLREKD  +R F E A    ++   + VPL+INDR+DIALA DA+GVH+G  D+P    R +LGPDKI+G S  + EEA +A  +GA+YIG G
Sbjct:    5 DFTLYAITDRSFIK--GMDIAEAVEIAIKNGVTVVQLREKDISSREFYEIALKVKEVTRKYNVPLIINDRVDIALAVDAEGVHVGPDDLPVGVVRRILGPDKIVGGSAYSVEEALKAEKEGADYIGAG 130          
BLAST of CF836368 vs. ExPASy Swiss-Prot
Match: THIE_CLOAB (Thiamine-phosphate pyrophosphorylase OS=Clostridium acetobutylicum GN=thiE PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.477e-27
Identity = 66/128 (51.56%), Postives = 88/128 (68.75%), Query Frame = 2
Query:  284 DLFLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARSARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCG 667
            D  LY VTD  + K+  R +  +++ A++GG T++QLREK+  T  F E+A    +I   + +PL+INDRIDIALA +ADGVH+GQSDMP   AR LLG DKIIGVS  + EEA +A  +GA Y+G G
Sbjct:    5 DYKLYLVTDRKVLKE--RDLYKSIEEAIKGGVTLVQLREKEMSTLDFYESALKLKKITETYKIPLIINDRIDIALAINADGVHIGQSDMPLIKARELLGKDKIIGVSAHSIEEALEAERNGATYLGVG 130          
BLAST of CF836368 vs. ExPASy Swiss-Prot
Match: THIE_METS3 (Thiamine-phosphate pyrophosphorylase OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=thiE PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.847e-27
Identity = 63/131 (48.09%), Postives = 91/131 (69.47%), Query Frame = 2
Query:  275 NPSDLFLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARSARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCG 667
            N  DL LY VT++  +++      + ++ +L+GG +++QLREK A+T  F   A    +I   + VPL+INDRIDIALA DADGVH+GQSDMPA++AR+++G DKI+GVS    +EA +A  + A+YIG G
Sbjct:    2 NNLDLSLYLVTNNSEDEE---KFLNIIEESLKGGVSVVQLREKKAETLDFYNLALKVKEITQKYNVPLIINDRIDIALAIDADGVHVGQSDMPAKTARSMIGEDKILGVSAANIKEAKKAQRESADYIGVG 129          
BLAST of CF836368 vs. ExPASy Swiss-Prot
Match: THIE_CHLAA (Thiamine-phosphate pyrophosphorylase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=thiE PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.847e-27
Identity = 65/128 (50.78%), Postives = 87/128 (67.97%), Query Frame = 2
Query:  284 DLFLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARSARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCG 667
            D  LY VTD+G+++  GRS    ++AA+ GGAT++Q REK A TR  +E A     +    GVPL++NDR+D+ALA DADGVH+GQ DMP   AR L+G +K++GVS     EA QA  DGA+Y+G G
Sbjct:    8 DWRLYVVTDAGLSR--GRSHRAVIEAAIVGGATVVQYREKHASTRQMIEEALELRDLTRRAGVPLIVNDRVDVALAVDADGVHVGQDDMPVALARRLIG-NKLLGVSAHNLSEALQAVRDGADYLGVG 132          
BLAST of CF836368 vs. ExPASy Swiss-Prot
Match: THIE_XANP2 (Thiamine-phosphate pyrophosphorylase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=thiE PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.974e-27
Identity = 62/130 (47.69%), Postives = 84/130 (64.62%), Query Frame = 2
Query:  278 PSDLFLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARSARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCG 667
            P DL LY VTD  +     R +   V AA++GGATI+QLR+ DA  R  +E A+A   +    G+PL+INDR+D+A+A DADGVHLGQ DM    ARA+LGP +I+G+S   P E   + + G +Y+G G
Sbjct:    4 PFDLTLYLVTDPRLVA--ARGLLTTVDAAVKGGATIVQLRDPDAHGRALVEQARALKALLAPLGIPLIINDRVDVAVAADADGVHLGQDDMTPADARAVLGPQRILGLSVGNPAEYAASDLSGVDYLGVG 131          
BLAST of CF836368 vs. ExPASy Swiss-Prot
Match: THIE_ROSCS (Thiamine-phosphate pyrophosphorylase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=thiE PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.303e-26
Identity = 61/125 (48.80%), Postives = 81/125 (64.80%), Query Frame = 2
Query:  293 LYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARSARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCG 667
            +Y +TD     +  RS+ D V AAL GGA  IQLR+KD   R  +   +A L +    GVPL++NDR+D+ALA DADGVH+GQ D+PA   R ++GP +I+GVS  T E+A QA  DGA Y+  G
Sbjct:   27 VYVITDRRAAGE--RSLIDIVHAALRGGANAIQLRDKDVPARAMIALGEALLPLTRAAGVPLIVNDRVDVALALDADGVHVGQDDIPADMVRRIIGPARILGVSVATVEQAQQAARDGATYVSVG 149          
BLAST of CF836368 vs. ExPASy Swiss-Prot
Match: THIE_MOOTA (Thiamine-phosphate pyrophosphorylase OS=Moorella thermoacetica (strain ATCC 39073) GN=thiE PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.303e-26
Identity = 62/128 (48.44%), Postives = 84/128 (65.62%), Query Frame = 2
Query:  284 DLFLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARSARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCG 667
            DL++   T  G     GR   + V+ AL GGAT IQLREK+   R  +E  +A  ++    G   ++NDR+DIALA +ADG+H+GQ D+PA  AR LLGP+KI+GVS  T +EA QA +DGA+Y+G G
Sbjct:    5 DLYVVITTKLG----GGRPTLELVRGALAGGATAIQLREKELPARELVELGRAIRELTRDAGATFIVNDRLDIALAVEADGLHIGQEDLPAPVARKLLGPEKILGVSAGTTDEARQAEVDGADYLGVG 128          
BLAST of CF836368 vs. ExPASy Swiss-Prot
Match: THIE_ALKOO (Thiamine-phosphate pyrophosphorylase OS=Alkaliphilus oremlandii (strain OhILAs) GN=thiE PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.303e-26
Identity = 64/128 (50.00%), Postives = 88/128 (68.75%), Query Frame = 2
Query:  284 DLFLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARSARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCG 667
            D  LY V+D  + K  GR    +++ A+ GGATI+QLREK+A +  F + A     +   + VPL+INDR+DIALA DADGVH+GQSD+PA   R+++G +KI+GVS  T EE+ +A  DGA+YIG G
Sbjct:    8 DYGLYLVSDRDVLK--GRDFIKSLEEAILGGATIVQLREKEASSLEFYQLALKAKALTEKYNVPLIINDRVDIALAVDADGVHVGQSDLPAHIVRSMIGQNKILGVSTATLEESKKAAEDGADYIGVG 133          
BLAST of CF836368 vs. ExPASy Swiss-Prot
Match: THIE_SYNWW (Thiamine-phosphate pyrophosphorylase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=thiE PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.222e-26
Identity = 65/127 (51.18%), Postives = 87/127 (68.50%), Query Frame = 2
Query:  281 SDLFLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARSARALLGPDKIIGVSCKTPEEAHQAWIDGANYIG 661
            SD  LY VTD  + +  GRS+ + V+ A++GG +++QLREK+A +R F E A+         GVPLLINDR+DIALA DADG+HLGQ D+P   AR+LLG +KIIG+S    EEA +    GA+Y+G
Sbjct:    4 SDYSLYLVTDRSLLQ--GRSLLEEVRKAVKGGVSMVQLREKEAGSREFYELAQTLQTELRELGVPLLINDRLDIALAVDADGLHLGQDDLPLPVARSLLGKEKIIGLSINKREEAREGEKMGADYLG 128          
The following BLAST results are available for this feature:
BLAST of CF836368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
THIE_CLONN4.049e-2851.20Thiamine-phosphate pyrophosphorylase OS=Clostridiu... [more]
THIE_THETN2.625e-2749.22Thiamine-phosphate pyrophosphorylase OS=Thermoanae... [more]
THIE_CLOAB4.477e-2751.56Thiamine-phosphate pyrophosphorylase OS=Clostridiu... [more]
THIE_METS35.847e-2748.09Thiamine-phosphate pyrophosphorylase OS=Methanobre... [more]
THIE_CHLAA5.847e-2750.78Thiamine-phosphate pyrophosphorylase OS=Chloroflex... [more]
THIE_XANP29.974e-2747.69Thiamine-phosphate pyrophosphorylase OS=Xanthobact... [more]
THIE_ROSCS1.303e-2648.80Thiamine-phosphate pyrophosphorylase OS=Roseiflexu... [more]
THIE_MOOTA1.303e-2648.44Thiamine-phosphate pyrophosphorylase OS=Moorella t... [more]
THIE_ALKOO1.303e-2650.00Thiamine-phosphate pyrophosphorylase OS=Alkaliphil... [more]
THIE_SYNWW2.222e-2651.18Thiamine-phosphate pyrophosphorylase OS=Syntrophom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02N14_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02N14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836368 ID=CF836368; Name=CF836368; organism=Citrus sinensis; type=EST; length=669bp
TTTCTTTGATCCTTAGGACTTCCACGAGCTGCGTTCTTCTCGTGTAAACA
CTCTTAACACTCATGGTACTGGTTGCACTTTGGCGTCGTGTATAGCAGCT
GAGCTAGCAAAAGGTTCTCCAATGCTATCAGCTGTTAAGGTGGCTAAATG
TTTCGTTGAAACAGCCTTGGATTACAGCAAAGACATTGTAATTGGAAGTG
GGCCTCAAGGGCCCTTTGACCACCTGCTGAGACTTAAAAGTACTTCTCGC
CAGTCTCATAGAGCGGAGGCATTCAATCCAAGTGACCTATTTTTGTATGC
TGTCACAGATTCAGGGATGAACAAGAAGTGGGGCCGTTCTATAACGGATG
CAGTTAAAGCTGCCTTAGAAGGAGGTGCTACCATTATTCAATTAAGAGAG
AAAGATGCTGACACAAGGGGCTTTCTCGAAGCAGCGAAAGCATGTCTTCA
AATTTGTTGTGTCCATGGAGTACCTCTGCTGATTAATGACCGCATCGATA
TTGCCCTCGCTTGTGATGCTGATGGTGTGCATCTAGGTCAGTCTGACATG
CCTGCTCGTAGTGCCCGTGCTCTTCTTGGTCCTGATAAGATCATTGGCGT
ATCGTGCAAAACACCTGAAGAAGCCCATCAAGCTTGGATTGATGGTGCCA
ATTACATTGGTTGTGGTGG
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