CF836430

Overview
NameCF836430
Unique NameCF836430
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836430 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.205e-55
Identity = 103/116 (88.79%), Postives = 112/116 (96.55%), Query Frame = -2
Query:  293 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFMKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 640
            AAEEGQVIGCHTVEAWNEQLQK N+TK L+VVDFTASWCGPCRFIAPFLAELAKKLPNV F+KVDVDELK+VA +WAVE+MPTFMFLKEGKI+DKVVGAKK+ELQQTIAKH+ATAS
Sbjct:    2 AAEEGQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKHMATAS 117          
BLAST of CF836430 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.311e-53
Identity = 97/113 (85.84%), Postives = 107/113 (94.69%), Query Frame = -2
Query:  302 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFMKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 640
            A+EEGQVI CHTVE WNEQLQK+NE+K LVVVDFTASWCGPCRFIAPF A+LAKKLPNVLF+KVD DELKSVA+DWA++AMPTFMFLKEGKI+DKVVGAKK+ELQ TIAKHLA
Sbjct:    2 ASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 114          
BLAST of CF836430 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.793e-50
Identity = 94/115 (81.74%), Postives = 105/115 (91.30%), Query Frame = -2
Query:  293 AEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFMKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 637
            AEEGQVIG HTV+AWNE LQK  + K+L+VVDFTASWCGPC+FIA F AELAKK+P V F+KVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKK+ELQQTIAKH+++ S
Sbjct:    2 AEEGQVIGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKHISSTS 116          
BLAST of CF836430 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.975e-46
Identity = 84/119 (70.59%), Postives = 104/119 (87.39%), Query Frame = -2
Query:  293 EMAAAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFMKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 649
            +  ++EEGQV GCH VE WNE  +K  ETK+LVVVDFTASWCGPCRFIAP LA++AKK+P+V+F+KVDVDELK+V+ +W+VEAMPTF+F+K+GK VD+VVGAKKEELQQTI KH A A+
Sbjct:    5 DATSSEEGQVFGCHKVEEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKHAAPAT 123          
BLAST of CF836430 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.895e-38
Identity = 68/110 (61.82%), Postives = 93/110 (84.55%), Query Frame = -2
Query:  308 AEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFMKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKH 637
            A EG+VI CHT+E WNE+++ +NE+K+L+V+DFTASWC PCRFIAP  AE+AKK  NV+F K+DVDEL++VA ++ VEAMPTF+F+KEG I+D+VVGA K+E+ + + KH
Sbjct:    2 AGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKH 111          
BLAST of CF836430 vs. ExPASy Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.791e-36
Identity = 70/118 (59.32%), Postives = 93/118 (78.81%), Query Frame = -2
Query:  290 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKK-LPNVLFMKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 640
            AAEEGQVIGCH ++ W  QL  + ++ +L+V+DFTASWC PCR IAP  A+LAKK + + +F KVDVDEL++VA ++ VEAMPTF+ +K+G +VDKVVGA+KE+L  TIAKH   A+A
Sbjct:    2 AAEEGQVIGCHEIDVWAVQLDTAKQSNKLIVIDFTASWCPPCRMIAPVFADLAKKFMSSAIFFKVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDLHATIAKHTGVATA 119          
BLAST of CF836430 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.646e-36
Identity = 67/110 (60.91%), Postives = 90/110 (81.82%), Query Frame = -2
Query:  308 AEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFMKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKH 637
            AEE QVI CHTV+ WNE+ QK+ ++ +L+V+DFTASWCGPCR I P+++ELAKK P+V F KVDVD+LK VA ++ VEAMP+F+ LKEG+ V+++VGA+K+EL   IA H
Sbjct:    2 AEEAQVIACHTVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKFPHVAFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELLHKIAVH 111          
BLAST of CF836430 vs. ExPASy Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TRX4 PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 3.646e-36
Identity = 71/118 (60.17%), Postives = 91/118 (77.12%), Query Frame = -2
Query:  290 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKK-LPNVLFMKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 640
            AAEEGQVIGCHT + W  QL K+ E+ +L+V+DFTASWC PCR IAP   +LAKK + + +F KVDVDEL+SVA ++ VEAMPTF+F+K G++VDK+VGA KE+LQ  I KH    +A
Sbjct:    2 AAEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKHTGVTTA 119          
BLAST of CF836430 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.761e-36
Identity = 69/117 (58.97%), Postives = 89/117 (76.07%), Query Frame = -2
Query:  290 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFMKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 640
            AAEEG VI CH  + ++ Q+ K+ E  ++V++DFTASWCGPCRFIAP  AE AKK P  +F+KVDVDELK VA  + VEAMPTF+F+K+G   DKVVGA+K++LQ TI KH+   +A
Sbjct:    2 AAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAA 118          
BLAST of CF836430 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.761e-36
Identity = 69/117 (58.97%), Postives = 89/117 (76.07%), Query Frame = -2
Query:  290 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFMKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 640
            AAEEG VI CH  + ++ Q+ K+ E  ++V++DFTASWCGPCRFIAP  AE AKK P  +F+KVDVDELK VA  + VEAMPTF+F+K+G   DKVVGA+K++LQ TI KH+   +A
Sbjct:    2 AAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAA 118          
The following BLAST results are available for this feature:
BLAST of CF836430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
TRXH_RICCO1.205e-5588.79Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH1_ARATH7.311e-5385.84Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_TOBAC5.793e-5081.74Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH1_TOBAC2.975e-4670.59Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH5_ARATH3.895e-3861.82Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_BRANA2.791e-3659.32Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE... [more]
TRXH_FAGES3.646e-3660.91Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRXH4_ARATH3.646e-3660.17Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_ORYSJ4.761e-3658.97Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI4.761e-3658.97Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02P06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02P06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836430 ID=CF836430; Name=CF836430; organism=Citrus sinensis; type=EST; length=731bp
TTTTTTTGGGACTATAAGCTGTCACGCATGTCTTATCATATCCCAGGAAC
ACACTCAACAAAATATGAGTCACTCTCAATATCAGAATTAGGTTCAACAA
CAAATATGAAATTAAATTATTGTAAAGACCACAGTATGAGCTTCATAGAA
CAGTAAATTACGGAATATTCAAACACACAAACAAACACAATCCCATAACC
ACTCTAATAAGTAAATTACAGACTGATAGCATATATTGAGGTCTATAGCC
TCTAAAGCCAAAAGGCAGGAGGATAGTTATAACTTATTAGGCAGAAGCAG
TTGCCAGATGCTTGGCAATAGTCTGCTGCAGTTCCTCTTTCTTTGCTCCA
ACCACCTTGTCCACAATCTTCCCCTCTTTCAGGAACATGAAAGTTGGCAT
GGCCTCCACTGCCCAGTCAGTGGCAACACTCTTCAGTTCATCCACATCAA
CCTTCATAAACAGGACATTAGGCAGTTTCTTGGCCAGCTCTGCCAAGAAA
GGAGCAATGAAACGGCATGGTCCGCACCATGAAGCAGTGAAATCAACAAC
AACCAGCTGTTTGGTTTCATTGCTCTTCTGGAGCTGCTCGTTCCAGGCCT
CAACGGTGTGGCACCCGATGACTTGTCCCTCTTCTGCTGCTGCCATTTCT
GCTTTCCGCGGTTATTACCACCACTACTCCACCCAACGATACTTCTATTC
TCTCCCTCGCTTTCTTGCTCTTGGTGGGCTG
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