CF836435

Overview
NameCF836435
Unique NameCF836435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length817
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836435 vs. ExPASy Swiss-Prot
Match: NB5R4_MOUSE (Cytochrome b5 reductase 4 OS=Mus musculus GN=Cyb5r4 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 4.118e-26
Identity = 58/131 (44.27%), Postives = 89/131 (67.94%), Query Frame = -3
Query:  285 IDASSSSAAGTFVKVASRKPAFRAKVPFEKGYSQVDWLRLTQTHPDLAGLKGQSNKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAWVNAEFLLEKCLVGTL 677
            + + +  A G+  +V+S+    R+KVP ++G S +DW+RLT++  DL GLKG   +  +T +E+K+H  +   W  ++G VYN+SPYM++HPGG D LM+A G D T LFN+ H WVN E +L++CLVG +
Sbjct:    4 VPSQAFPAPGSQQRVSSQG---RSKVPLKQGRSLMDWIRLTKSGKDLTGLKGGLIE--VTEEELKKHNKKEDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGADGTDLFNEVHRWVNYESMLKECLVGRM 129          
BLAST of CF836435 vs. ExPASy Swiss-Prot
Match: NB5R4_HUMAN (Cytochrome b5 reductase 4 OS=Homo sapiens GN=CYB5R4 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.379e-26
Identity = 53/109 (48.62%), Postives = 79/109 (72.48%), Query Frame = -3
Query:  285 RAKVPFEKGYSQVDWLRLTQTHPDLAGLKGQSNKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAWVNAEFLLEKCLVGTL 611
            R+KVP ++G S +DW+RLT++  DL GLKG+  +  +T +E+K+H  +   W  ++G VYN+SPYM++HPGG D LM+A G D T LF++ H WVN E +L++CLVG +
Sbjct:   23 RSKVPLKQGRSLMDWIRLTKSGKDLTGLKGRLIE--VTEEELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSDGTELFDQVHRWVNYESMLKECLVGRM 129          
BLAST of CF836435 vs. ExPASy Swiss-Prot
Match: NB5R4_RAT (Cytochrome b5 reductase 4 OS=Rattus norvegicus GN=Cyb5r4 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 7.025e-26
Identity = 58/131 (44.27%), Postives = 87/131 (66.41%), Query Frame = -3
Query:  285 IDASSSSAAGTFVKVASRKPAFRAKVPFEKGYSQVDWLRLTQTHPDLAGLKGQSNKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAWVNAEFLLEKCLVGTL 677
            + + +  A G+  +VAS+    R+KVP ++G S +DW RLT++  D  GLKG   +  +T +E+K+H  +   W  ++G VYN+SPYM++HPGG D LM+A G D T LFN+ H WVN E +L++CLVG +
Sbjct:    4 VPSQAFPAPGSQQRVASQG---RSKVPLKQGRSLMDWFRLTKSGKDFTGLKGGLIE--VTEEELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGADGTDLFNEVHRWVNYESMLKECLVGRM 129          
BLAST of CF836435 vs. ExPASy Swiss-Prot
Match: NB5R4_BOVIN (Cytochrome b5 reductase 4 OS=Bos taurus GN=CYB5R4 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.025e-26
Identity = 53/109 (48.62%), Postives = 79/109 (72.48%), Query Frame = -3
Query:  285 RAKVPFEKGYSQVDWLRLTQTHPDLAGLKGQSNKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAWVNAEFLLEKCLVGTL 611
            R+KVP ++G S +DW+RLT++  DL GLKG+  +  +T +E+K+H  +   W  ++G VYN+SPYM++HPGG D LM+A G D T LF++ H WVN E +L++CLVG +
Sbjct:   23 RSKVPLKQGRSLMDWIRLTKSGKDLTGLKGRLIE--VTEEELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSDGTDLFDQVHRWVNYESMLKECLVGRM 129          
BLAST of CF836435 vs. ExPASy Swiss-Prot
Match: NB5R4_DANRE (Cytochrome b5 reductase 4 OS=Danio rerio GN=cyb5r4 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.669e-25
Identity = 58/131 (44.27%), Postives = 88/131 (67.18%), Query Frame = -3
Query:  285 IDASSSSAAGTFVKVASRKPAFRAKVPFEKGYSQVDWLRLTQTHPDLAGLKGQSNKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAWVNAEFLLEKCLVGTL 677
            + + +  AAG+  +VA    + R KV  + G+S +DW+RLT++  DL GL+G+  +  +T DE+K+H ++   WT ++G VYNLS YM FHPGG + LM+A G D T LF++ H WVN E +L++CLVG +
Sbjct:    4 VPSQAFPAAGSQQRVAPAGQS-RNKVVLKPGHSLLDWIRLTKSGQDLTGLRGRLIE--VTEDELKKHNTKKDCWTCIRGMVYNLSAYMDFHPGGEEELMRAAGIDSTDLFDEVHRWVNYESMLKECLVGRM 131          
BLAST of CF836435 vs. ExPASy Swiss-Prot
Match: NB5R4_XENTR (Cytochrome b5 reductase 4 OS=Xenopus tropicalis GN=cyb5r4 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.553e-25
Identity = 51/109 (46.79%), Postives = 77/109 (70.64%), Query Frame = -3
Query:  285 RAKVPFEKGYSQVDWLRLTQTHPDLAGLKGQSNKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAWVNAEFLLEKCLVGTL 611
            R+KVP + G S +DW+RLT++  DL GLKG+     +T +E+ QH  +   W  ++G VYN++PYM++HPGG + LMKA G+D T LF++ H WVN E +L++CL+G +
Sbjct:   23 RSKVPLKPGRSLMDWIRLTKSGKDLTGLKGRLID--VTEEELAQHNKKEDCWICIRGMVYNITPYMEYHPGGEEELMKAAGRDGTDLFDQVHRWVNYESMLKECLIGRM 129          
BLAST of CF836435 vs. ExPASy Swiss-Prot
Match: YDAA_SCHPO (Uncharacterized protein C1F12.10c OS=Schizosaccharomyces pombe GN=SPAC1F12.10c PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.495e-17
Identity = 43/127 (33.86%), Postives = 76/127 (59.84%), Query Frame = -3
Query:  285 SAAGTFVKVASRKPA--FRAKVPFEKGYSQVDWLRLTQTHPDLAGLKGQSNKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAWVNAEFLLEKCLVGTL 659
            S A + V+ + ++P   FR K     G+SQ++W +L  +  +L+G++       +T +E+ +H+++   W  ++G+VYN+S Y+ +HP G   ++   G+D T +F K+HAWVN E LL+   VG L
Sbjct:   23 SPASSNVEHSEKQPRRDFRVKKYVAPGFSQLNWSKLVASGQNLSGVEKPIP---VTKEELAKHKTKEDCWIAIRGKVYNVSAYLPYHPAGQKRILDYAGRDATVIFMKFHAWVNEEALLKTSFVGFL 146          
BLAST of CF836435 vs. ExPASy Swiss-Prot
Match: YMW3_YEAST (Uncharacterized heme-binding protein YMR073C OS=Saccharomyces cerevisiae GN=YMR073C PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.120e-14
Identity = 53/157 (33.76%), Postives = 75/157 (47.77%), Query Frame = -3
Query:  285 ASRKPAFRAKVPFEKGYSQVDWLRLT-------------QTHPDL---------------AGLKGQSNKRLITMDE-----------VKQH-QSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMK-AVGKDCTALFNKYHAWVNAEFLLEKCLVGTL 632
            +SRKP  R K+  + G+S +DW  LT             Q   DL               + LK Q   + I + +           VK+H + E  +W V+ G+VY++S Y+KFHPGG D+L+K     D    FNKYH WVN E LL+ C +G +
Sbjct:   43 SSRKPLVRTKIRLDPGHSALDWHSLTSNPANYYTKFVSLQLIQDLLDDPVFQKDNFKFSPSQLKNQLLVQKIPLYKIMPPLRINRKIVKKHCKGEDELWCVINGKVYDISSYLKFHPGGTDILIKHRNSDDLITYFNKYHQWVNYEKLLQVCFIGVV 199          
BLAST of CF836435 vs. ExPASy Swiss-Prot
Match: YJ83_SCHPO (Uncharacterized heme-binding protein C330.03c OS=Schizosaccharomyces pombe GN=SPCC330.03c PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.795e-13
Identity = 41/130 (31.54%), Postives = 71/130 (54.62%), Query Frame = -3
Query:  285 DASSSSAAGTFVKVASRKPAFRAKVPFEKGYSQVDWLRLTQTHPDLAGLKGQSNKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAWVNAEFLLEKCLVGTL 674
            +A+S    G   +   +K   + K+P   G++Q DW  L  +  +L+G++   +   +T +E+ +H S    W  ++G+VYN++ Y+ +HP G   ++K  G D T  + K+H WVN E LL+   VG L
Sbjct:   20 EANSKDTKGLKEERKRKKRKNKYKIP--PGHTQQDWDALVASGKNLSGVESPIS---VTAEELAKHCSPDDCWMAIRGKVYNVTAYLPYHPVGPKKILKHSGVDATKPYLKHHDWVNEEELLKTSFVGYL 144          
BLAST of CF836435 vs. ExPASy Swiss-Prot
Match: FAD5_MORAP (Delta(5) fatty acid desaturase OS=Mortierella alpina GN=DES1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.680e-11
Identity = 29/80 (36.25%), Postives = 51/80 (63.75%), Query Frame = -3
Query:  285 GQSNKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAWVNAEFLLEKCLVGTL 524
            G    +  T +E+  H ++G ++  ++GRVY+++ ++  HPGGVD L+   G+D T +F  YHA+  A+ +++K  VGTL
Sbjct:    2 GTDQGKTFTWEELAAHNTKGDLFLAIRGRVYDVTKFLSRHPGGVDTLLLGAGRDVTPVFEMYHAFGAADAIMKKYYVGTL 81          
The following BLAST results are available for this feature:
BLAST of CF836435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
NB5R4_MOUSE4.118e-2644.27Cytochrome b5 reductase 4 OS=Mus musculus GN=Cyb5r... [more]
NB5R4_HUMAN5.379e-2648.62Cytochrome b5 reductase 4 OS=Homo sapiens GN=CYB5R... [more]
NB5R4_RAT7.025e-2644.27Cytochrome b5 reductase 4 OS=Rattus norvegicus GN=... [more]
NB5R4_BOVIN7.025e-2648.62Cytochrome b5 reductase 4 OS=Bos taurus GN=CYB5R4 ... [more]
NB5R4_DANRE2.669e-2544.27Cytochrome b5 reductase 4 OS=Danio rerio GN=cyb5r4... [more]
NB5R4_XENTR4.553e-2546.79Cytochrome b5 reductase 4 OS=Xenopus tropicalis GN... [more]
YDAA_SCHPO3.495e-1733.86Uncharacterized protein C1F12.10c OS=Schizosacchar... [more]
YMW3_YEAST2.120e-1433.76Uncharacterized heme-binding protein YMR073C OS=Sa... [more]
YJ83_SCHPO1.795e-1331.54Uncharacterized heme-binding protein C330.03c OS=S... [more]
FAD5_MORAP1.680e-1136.25Delta(5) fatty acid desaturase OS=Mortierella alpi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02P11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02P11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836435 ID=CF836435; Name=CF836435; organism=Citrus sinensis; type=EST; length=817bp
TTTTTTTTTTTTTTTTTCCGAAGACTTACTAACACATTGTGCTATTACTA
TATTGATTCATCTTTCAGCATACAATTTTATTTGCAATGCGGAACTTGCA
CAATCAAACACCTGAAAGGTGCAATGAAATTATCCCCTACTGGCAAAAAA
AGGGGTTGAATGGTTATGCTGTATAACAAAAACATGGAAAGTAAAATGTT
GGGGCCAGGGAGTATGGTAAGATTACATGGGCAAAGAATCACTTCTAAGT
TGGCTGAGTATCACTGCCTTGGTCGACTATCATCCAAAGTGCCCACAAGG
CACTTCTCCAATAAAAACTCGGCGTTTACCCAAGCATGGTATTTATTGAA
CAAAGCCGTACAGTCTTTACCCACCGCCTTCATCAGCATATCAACACCTC
CAGGGTGAAACTTCATGTACGGAGATAAATTGTATACACGACCTTTTAAG
ACAGTCCACATGGAACCTTCACTCTGATGCTGTTTAACTTCATCCATGGT
TATCAGCCTCTTATTTGATTGTCCCTTCAAACCTGCAAGATCAGGATGAG
TTTGAGTAAGCCTAAGCCAATCCACTTGGCTATAGCCCTTCTCAAAAGGA
ACCTTGGCCCGAAACGCCGGCTTACGACTCGCAACTTTCACAAAAGTTCC
AGCTGCTGATGAAGACGATGCATCAATAACATTATACGACAAAAACCCCA
CCGTCTTATTCGTCTTTGAAGGCAATTCATCTTGTTTCCATAAAAACCCG
CTGCTTTGATTTTCGACACTACCATCAGCATCTGAACTTTGATTCTTTTC
GACCTTGCAAAATGTGA
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