CF836438

Overview
NameCF836438
Unique NameCF836438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836438 vs. ExPASy Swiss-Prot
Match: ERF17_ARATH (Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana GN=ERF017 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.215e-45
Identity = 106/203 (52.22%), Postives = 128/203 (63.05%), Query Frame = 2
Query:  134 VEKPAEGSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANSEPLRSQSPEQSVSELQTEYLSPSISEATVQLDSDGVFDGSLLDLLTASSSNNYPSEYGIFPGFDDLSN----DIFTPQL-PAVDF---ADENF-DGLLLNQDSFLWNF 715
            +E  +    S+YKGVRKRKWGK+VSEIRLPNSR RIWLGSYDT EKAARAFDAAL+CLRG +AKFNFPDNPP ISGGR+L  SEI+  AA+FANS      S   +  E++ E  S S+             D   L +L    S N+ SE+G+FPGFDD S+    D F  QL P  D+    +E + DG +     FLWNF
Sbjct:    1 MEGSSSSMQSKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPEKAARAFDAALYCLRGNNAKFNFPDNPPVISGGRNLSRSEIREAAARFANS--AEDDSSGGAGYEIRQESASTSMD-----------VDSEFLSMLPTVGSGNFASEFGLFPGFDDFSDEYSGDRFREQLSPTQDYYQLGEETYADGSM-----FLWNF 185          
BLAST of CF836438 vs. ExPASy Swiss-Prot
Match: ERF18_ARATH (Ethylene-responsive transcription factor ERF018 OS=Arabidopsis thaliana GN=ERF018 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.033e-39
Identity = 104/211 (49.29%), Postives = 127/211 (60.19%), Query Frame = 2
Query:  119 MVKHAVEKPAE----GSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANSEPLRSQSPEQS----VSELQTEYLSPSISEATVQLDSDGVFDGSLLDLLTASSSNNYPSEYGIFPGFDDLS----NDIFTPQLPAVDFADENFDGLLLNQDSFLWNF 715
            MVK A+++  +       S+YKGVRKRKWGK+VSEIRLP+SR RIWLGSYDT EKAARAFDAA FCLRG  A FNFP+NPP IS  +SL P EIQ  AA+FAN+     +  E+S     SE++ E  S S S AT  +D    +D S LDLL        P  +G     DD S     D FT  LP  D+  E+    LL++   LW+F
Sbjct:    1 MVKQAMKEEEKKRNTAMQSKYKGVRKRKWGKWVSEIRLPHSRERIWLGSYDTPEKAARAFDAAQFCLRGGDANFNFPNNPPSISVEKSLTPPEIQEAAARFANTFQDIVKGEEESGLVPGSEIRPESPSTSASVATSTVD----YDFSFLDLL--------PMNFGFDSFSDDFSGFSGGDRFTEILPIEDYGGES----LLDESLILWDF 195          
BLAST of CF836438 vs. ExPASy Swiss-Prot
Match: ERF16_ARATH (Ethylene-responsive transcription factor ERF016 OS=Arabidopsis thaliana GN=ERF016 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.667e-33
Identity = 69/95 (72.63%), Postives = 80/95 (84.21%), Query Frame = 2
Query:  164 RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANSEPLRSQSPEQ 448
            +Y GVRKRKWGK+V+EIRLPNSR RIWLGS+D+AEKAARAFDAAL+CLRG  A+FNFPDNPP+I GGRSL P +IQ VA++FA  E L    PEQ
Sbjct:    6 KYTGVRKRKWGKWVAEIRLPNSRDRIWLGSFDSAEKAARAFDAALYCLRGPGARFNFPDNPPEIPGGRSLTPQQIQVVASRFACEEEL--LPPEQ 98          
BLAST of CF836438 vs. ExPASy Swiss-Prot
Match: ERF12_ARATH (Ethylene-responsive transcription factor ERF012 OS=Arabidopsis thaliana GN=ERF012 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.668e-23
Identity = 84/242 (34.71%), Postives = 112/242 (46.28%), Query Frame = 2
Query:   65 IQHHSSKSRIPIT*SPLKMVKHAVE--------KPAEGSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPD-------ISGGRSLKPSEIQAVAAQFANSEPLRSQSPEQSVSELQTEYLSPSISEATVQLDSDGVFD-------GSLLD---LLTASSSNNYPSEYGIFPGFDDLSNDIFTPQLPAVDFADENFDGLLLNQDSFLWNF 715
            IQ  S+K  +P++ SP      +          K  +    +YKGVR R WG +VSEIR PN + RIWLGSY TAE AARA+D AL CL+G  A  NFP +          +     L P  IQ VAAQ ANS                  + +P+ S  +   D D   D       GS +D    L  S+S+ Y    G+F  FD+ +   ++PQL +    DE F     + D  LW+F
Sbjct:    8 IQTSSTKKEMPLSSSPSSSSSSSSSSSSSSCKNKNKKSKIKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDVALLCLKGPQANLNFPTSSSSHHLLDNLLDENTLLSPKSIQRVAAQAANS----------------FNHFAPTSSAVSSPSDHDHHHDDGMQSLMGSFVDNHVSLMDSTSSWYDDHNGMFL-FDNGAPFNYSPQLNSTTMLDEYF---YEDADIPLWSF 229          
BLAST of CF836438 vs. ExPASy Swiss-Prot
Match: ERF15_ARATH (Ethylene-responsive transcription factor ERF015 OS=Arabidopsis thaliana GN=ERF015 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.912e-21
Identity = 50/87 (57.47%), Postives = 62/87 (71.26%), Query Frame = 2
Query:  167 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFP-DNPPDISGG--RSLKPSEIQAVAAQFANS 418
            Y+GVRKR WGK+VSEIR+P +  RIWLGSYD  EKAARA+DAALFC+RG    +NFP D  P +  G  R L   +IQ +A  +A+S
Sbjct:   27 YRGVRKRSWGKWVSEIRVPKTGRRIWLGSYDAPEKAARAYDAALFCIRGEKGVYNFPTDKKPQLPEGSVRPLSKLDIQTIATNYASS 113          
BLAST of CF836438 vs. ExPASy Swiss-Prot
Match: ERF42_ARATH (Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana GN=ERF042 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.563e-21
Identity = 68/204 (33.33%), Postives = 105/204 (51.47%), Query Frame = 2
Query:  167 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFA-------------NSEPLRSQSPEQSVSELQTEYLSPSISEATVQLDSDGVFDGSLLDLLTASS-SNNYPSEYGIFPGFDDLSNDIFTPQLPAVDFADENF----DGLLLN---QDSFLWNF 715
            Y+G R R WGK+VSEIR P  ++RIWLG++ TAE AARA D A   ++G SA  NFP+    +    SL   +IQA AA+ A             +S PL+++   + + +  +   S S S ++    S  +  G L D++   S  NN   +  +   +D L   +  P  P +D  + +F    D +LL+   ++SFLWN+
Sbjct:   26 YRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIKGSSAILNFPELADFLPRPVSLSQQDIQAAAAEAALMDFKTVPFHLQDDSTPLQTRCDTEKIEKWSSSSSSASSSSSSSSSSSSSMLSGELGDIVELPSLENNVKYDCAL---YDSLEGLVSMP--PWLDATENDFRYGDDSVLLDPCLKESFLWNY 224          
BLAST of CF836438 vs. ExPASy Swiss-Prot
Match: ERF13_ARATH (Ethylene-responsive transcription factor ERF013 OS=Arabidopsis thaliana GN=ERF013 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.265e-21
Identity = 71/177 (40.11%), Postives = 90/177 (50.85%), Query Frame = 2
Query:   59 NSIQHHSSKSRIPIT*SPLKMVKHAVEKPAEGSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPD----NP--PDISGGRSLKPSEIQAVAAQFANSEPLRSQSPEQSVSELQTEYL----SPSISEATVQLDSD--GVFDGSLLDLL 553
            +S+ H SS S      S    ++H   +  +    +YKGVR R WG +V+EIR PN + RIWLGSY TAE AARA+DAAL CL+G  A  NFP+    +P   +I     L P  IQ VAAQ ANS       P         + L    S S S A+   D D     DG L+ L+
Sbjct:   15 SSLSHSSSSSS-----SSTSALRH---QSCKNKIKKYKGVRMRSWGSWVTEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGPKANLNFPNITTTSPFLMNIDEKTLLSPKSIQKVAAQAANSSSDHFTPPSDENDHDHDDGLDHHPSASSSAASSPPDDDHHNDDDGDLVSLM 183          
BLAST of CF836438 vs. ExPASy Swiss-Prot
Match: ERF14_ARATH (Ethylene-responsive transcription factor ERF014 OS=Arabidopsis thaliana GN=ERF014 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.709e-20
Identity = 77/196 (39.29%), Postives = 95/196 (48.47%), Query Frame = 2
Query:  164 RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSA-KFNFPD---------NPPDISGGRSLKPSEIQAVAAQFANSEPLRSQSPEQSVSELQTEYLSPSISEATVQLDSDGVFDGSLLDLLTASSSNNYPSEYGIFPGFDDLS--NDIFTPQLPAVDFADENFDGLLLNQDSFLWNF 715
            +YKGVR R WG +VSEIR PN + RIWLGSY TAE AARA+DAAL CL+G SA   NFP+         N  D +   S K  +  A AA  AN++P  S     SVS       SP  SE    + S   +D  +       S +   S Y  F G D     N +  P L     +D+ F+      D  LWNF
Sbjct:   34 KYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANNLNFPEISTSLYHIINNGDNNNDMSPKSIQRVAAAAAAANTDPSSS-----SVSTSSPLLSSP--SEDLYDVVSMSQYDQQV-------SLSESSSWYNCFDGDDQFMFINGVSAPYL-TTSLSDDFFE----EGDIRLWNF 210          
BLAST of CF836438 vs. ExPASy Swiss-Prot
Match: ERF23_ARATH (Ethylene-responsive transcription factor ERF023 OS=Arabidopsis thaliana GN=ERF023 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.033e-20
Identity = 44/84 (52.38%), Postives = 59/84 (70.24%), Query Frame = 2
Query:  167 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANS 418
            Y GVRKR+WGK+VSEIR P  ++RIWLGS+   E AA+A+D A FCL+GR A+ NFP+   D+    +  P +IQ  AA+ AN+
Sbjct:   45 YHGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAAKAYDVAAFCLKGRKAQLNFPEEIEDLPRPSTCTPRDIQVAAAKAANA 128          
BLAST of CF836438 vs. ExPASy Swiss-Prot
Match: RAP29_ARATH (Ethylene-responsive transcription factor RAP2-9 OS=Arabidopsis thaliana GN=RAP2-9 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.370e-19
Identity = 52/116 (44.83%), Postives = 70/116 (60.34%), Query Frame = 2
Query:   74 HSSKSRIPIT*SPLKMVKHAVEKPAEGSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNP-PDISGGRSL----KPSEIQAVAAQ 406
            +  K   P+    + M +         ++ RYKG+R RKWGK+V+EIR PN R+RIWLGSY TA  AARA+D A+F LRG SA+ NFP+    D +GG  L     P+ I+  AA+
Sbjct:    5 YKRKQEFPMVKEGMVMTEKPKRNLISSNEKRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYKTAVAAARAYDTAVFYLRGPSARLNFPEEVFKDGNGGEGLGGDMSPTLIRKKAAE 120          
The following BLAST results are available for this feature:
BLAST of CF836438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
ERF17_ARATH7.215e-4552.22Ethylene-responsive transcription factor ERF017 OS... [more]
ERF18_ARATH2.033e-3949.29Ethylene-responsive transcription factor ERF018 OS... [more]
ERF16_ARATH1.667e-3372.63Ethylene-responsive transcription factor ERF016 OS... [more]
ERF12_ARATH2.668e-2334.71Ethylene-responsive transcription factor ERF012 OS... [more]
ERF15_ARATH1.912e-2157.47Ethylene-responsive transcription factor ERF015 OS... [more]
ERF42_ARATH5.563e-2133.33Ethylene-responsive transcription factor ERF042 OS... [more]
ERF13_ARATH7.265e-2140.11Ethylene-responsive transcription factor ERF013 OS... [more]
ERF14_ARATH4.709e-2039.29Ethylene-responsive transcription factor ERF014 OS... [more]
ERF23_ARATH8.033e-2052.38Ethylene-responsive transcription factor ERF023 OS... [more]
RAP29_ARATH1.370e-1944.83Ethylene-responsive transcription factor RAP2-9 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02P12_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02P12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836438 ID=CF836438; Name=CF836438; organism=Citrus sinensis; type=EST; length=726bp
TAAAAGCAAACACGTATACGAGAATCATCATCCAAATCACACTCAATAGT
TCCGAGTCAACTCGATACAGCACCACTCGTCTAAATCAAGAATACCCATA
ACCTGAAGCCCTTTAAAAATGGTGAAGCACGCAGTCGAAAAGCCTGCTGA
AGGAAGTGACTCTCGTTACAAGGGTGTCCGAAAGCGAAAGTGGGGGAAAT
ATGTGTCTGAAATCAGACTACCCAACAGCCGTGCCCGTATCTGGCTGGGC
TCCTACGACACAGCAGAAAAAGCAGCGCGTGCTTTCGACGCTGCTTTGTT
TTGCTTACGTGGCCGATCAGCCAAGTTTAATTTCCCGGACAACCCACCCG
ACATATCAGGCGGGCGCTCACTTAAGCCATCTGAGATTCAAGCTGTGGCG
GCTCAGTTCGCGAATTCGGAGCCGCTGAGGAGTCAATCACCAGAACAGTC
GGTGTCCGAATTGCAAACGGAGTACTTATCGCCGTCGATTTCTGAGGCAA
CGGTTCAGTTGGACAGCGATGGGGTTTTTGACGGGTCTTTATTGGATCTT
TTAACGGCATCGAGTTCCAATAACTACCCTTCCGAATATGGGATATTTCC
TGGGTTTGATGACCTGTCTAATGACATTTTTACTCCGCAACTCCCAGCTG
TTGATTTTGCAGACGAGAATTTTGATGGGCTATTGTTAAATCAAGATTCA
TTTCTTTGGAATTTTTAAATTAGTAA
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