CF836439

Overview
NameCF836439
Unique NameCF836439
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836439 vs. ExPASy Swiss-Prot
Match: NACB_ASPTN (Nascent polypeptide-associated complex subunit beta OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=egd1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.020e-22
Identity = 54/112 (48.21%), Postives = 79/112 (70.54%), Query Frame = -2
Query:  297 RIGVNAIPAIEEVNIFKEDV-VIQFLNPKVQASIAANTWVVSGAPQTKKLQDIFPGIINQLGPDNLDTLRKLAEQFQKQAPNAGSGAPTTQEDAADEVPELVAGETFEAAAE 629
            ++ V  IPA+EEVN+FKED  VI F NP+V AS+ +NT+ + G  + K+L ++ PGI+NQLGPD+L +LRKLAE +Q    N  +GA   ++D  D++P+LV G+ FE+  E
Sbjct:   57 KMNVQPIPAVEEVNMFKEDGNVIHFGNPRVHASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNMQKNQ-AGAEGKKDDEEDDIPDLVEGQDFESKVE 167          
BLAST of CF836439 vs. ExPASy Swiss-Prot
Match: NACB_AJECN (Nascent polypeptide-associated complex subunit beta OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=EGD1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.967e-22
Identity = 56/113 (49.56%), Postives = 75/113 (66.37%), Query Frame = -2
Query:  297 RIGVNAIPAIEEVNIFKEDV-VIQFLNPKVQASIAANTWVVSGAPQTKKLQDIFPGIINQLGPDNLDTLRKLAEQFQK-QAPNAGSGAPTTQEDAADEVPELVAGETFEAAAE 629
            ++ V  I AIEEVN+FKED  VI F  PKV AS+ +NT+ + G  + K+L ++ PGI+NQLGPD+L +LRKLAE +Q  Q    G  A    +D  DE+P+LV GE FE+  E
Sbjct:   46 KLNVQPIQAIEEVNMFKEDGNVIHFAAPKVHASVPSNTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAESYQSMQKGEGGEDAKKDDDDDDDEIPDLVEGENFESKVE 158          
BLAST of CF836439 vs. ExPASy Swiss-Prot
Match: NACB_ASPNC (Nascent polypeptide-associated complex subunit beta OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=egd1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.127e-21
Identity = 55/112 (49.11%), Postives = 77/112 (68.75%), Query Frame = -2
Query:  297 RIGVNAIPAIEEVNIFKEDV-VIQFLNPKVQASIAANTWVVSGAPQTKKLQDIFPGIINQLGPDNLDTLRKLAEQFQKQAPNAGSGAPTTQEDAADEVPELVAGETFEAAAE 629
            ++ V  I AIEEVN+FKED  VI F  PKV AS+ +NT+ + G  + K+L ++ PGI+NQLGPD+L +LRKLAE +Q    N  +GA   ++D  D++P+LV GE FE+  E
Sbjct:   45 KMNVQPIQAIEEVNMFKEDGNVIHFGAPKVHASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNMQKNQ-AGADGKKDDEEDDIPDLVEGENFESNVE 155          
BLAST of CF836439 vs. ExPASy Swiss-Prot
Match: NACB_ASPOR (Nascent polypeptide-associated complex subunit beta OS=Aspergillus oryzae GN=egd1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.473e-21
Identity = 55/112 (49.11%), Postives = 77/112 (68.75%), Query Frame = -2
Query:  297 RIGVNAIPAIEEVNIFKEDV-VIQFLNPKVQASIAANTWVVSGAPQTKKLQDIFPGIINQLGPDNLDTLRKLAEQFQKQAPNAGSGAPTTQEDAADEVPELVAGETFEAAAE 629
            ++ V  I AIEEVN+FKED  VI F  PKV AS+ +NT+ + G  + K+L ++ PGI+NQLGPD+L +LRKLAE +Q    N  +GA   ++D  D++P+LV GE FE+  E
Sbjct:   86 KMNVQPIQAIEEVNMFKEDGNVIHFGAPKVHASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNMQKNQ-AGAEGKKDDDEDDIPDLVEGENFESNVE 196          
BLAST of CF836439 vs. ExPASy Swiss-Prot
Match: NACB_PHANO (Nascent polypeptide-associated complex subunit beta OS=Phaeosphaeria nodorum GN=EGD1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.512e-21
Identity = 54/116 (46.55%), Postives = 75/116 (64.66%), Query Frame = -2
Query:  291 RIGVNAIPAIEEVNIFKEDV-VIQFLNPKVQASIAANTWVVSGAPQTKKLQDIFPGIINQLGPDNLDTLRKLAEQFQKQAPNAGSGAPTTQEDAA--DEVPELVAGETFEAAAEVK 629
            ++ V  I AIEEVN+FK D  VI F  PKV AS+ +NT+ + G  + K+L ++ PGI+NQLGPD+L +LRKLAE +Q      G       +D    D++PELVAG+ FE+  EV+
Sbjct:   45 KLNVQPIQAIEEVNMFKSDGNVIHFSAPKVHASVPSNTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAESYQSMQKEKGEDGDKKDDDDEDDDDIPELVAGDNFESKTEVE 160          
BLAST of CF836439 vs. ExPASy Swiss-Prot
Match: NACB_NEOFI (Nascent polypeptide-associated complex subunit beta OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=egd1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.284e-21
Identity = 53/112 (47.32%), Postives = 76/112 (67.86%), Query Frame = -2
Query:  297 RIGVNAIPAIEEVNIFKEDV-VIQFLNPKVQASIAANTWVVSGAPQTKKLQDIFPGIINQLGPDNLDTLRKLAEQFQKQAPNAGSGAPTTQEDAADEVPELVAGETFEAAAE 629
            ++ V  I AIEEVN+FKED  VI F  PKV AS+ +NT+ + G  + K+L ++ PGI+NQLGPD+L +LRKLAE +Q     AG+     +++  D++P+LV GE FE+  E
Sbjct:   74 KMNVQPIQAIEEVNMFKEDGNVIHFAAPKVHASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNMQKQAGTEGKKDEDE--DDIPDLVEGENFESNVE 183          
BLAST of CF836439 vs. ExPASy Swiss-Prot
Match: NACB_COCIM (Nascent polypeptide-associated complex subunit beta OS=Coccidioides immitis GN=EGD1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.284e-21
Identity = 56/112 (50.00%), Postives = 75/112 (66.96%), Query Frame = -2
Query:  297 RIGVNAIPAIEEVNIFKEDV-VIQFLNPKVQASIAANTWVVSGAPQTKKLQDIFPGIINQLGPDNLDTLRKLAEQFQKQAPNAGSGAPTTQEDAADEVPELVAGETFEAAAE 629
            ++ V  I AIEEVN+FKED  VI F  PKVQAS+ +NT+ + G  + K+L ++ PGI+NQLGPD+L +LRKLAE +Q      G      +ED  D +P+LV GETFE+  E
Sbjct:   46 KLNVQPIQAIEEVNMFKEDGNVIHFAAPKVQASVPSNTFAIYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNMQKKEGEAKKEGEEDDED-IPDLV-GETFESKVE 155          
BLAST of CF836439 vs. ExPASy Swiss-Prot
Match: NACB_ASPFU (Nascent polypeptide-associated complex subunit beta OS=Aspergillus fumigatus GN=egd1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.284e-21
Identity = 54/112 (48.21%), Postives = 76/112 (67.86%), Query Frame = -2
Query:  297 RIGVNAIPAIEEVNIFKEDV-VIQFLNPKVQASIAANTWVVSGAPQTKKLQDIFPGIINQLGPDNLDTLRKLAEQFQKQAPNAGSGAPTTQEDAADEVPELVAGETFEAAAE 629
            ++ V  I AIEEVN+FKED  VI F  PKV AS+ +NT+ + G  + K+L ++ PGI+NQLGPD+L +LRKLAE +Q     A  GA   +++  D++P+LV GE FE+  E
Sbjct:   77 KMNVQPIQAIEEVNMFKEDGNVIHFAAPKVHASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNMQKQA--GAEGKKDEDEDDIPDLVEGENFESNVE 186          
BLAST of CF836439 vs. ExPASy Swiss-Prot
Match: NACB_ASPCL (Nascent polypeptide-associated complex subunit beta OS=Aspergillus clavatus GN=egd1 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.308e-21
Identity = 53/112 (47.32%), Postives = 77/112 (68.75%), Query Frame = -2
Query:  297 RIGVNAIPAIEEVNIFKEDV-VIQFLNPKVQASIAANTWVVSGAPQTKKLQDIFPGIINQLGPDNLDTLRKLAEQFQKQAPNAGSGAPTTQEDAADEVPELVAGETFEAAAE 629
            ++ V  I AIEEVN+FKED  VI F  PKV AS+ +NT+ + G  + K+L ++ PGI+NQLGPD+L +LRKLAE +Q     + +GA   +++  D++P+LV GE FE+  E
Sbjct:   54 KMNVQPIQAIEEVNMFKEDGNVIHFAAPKVHASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNM-QKSQAGAEGKKDEDEDDIPDLVEGENFESNVE 164          
BLAST of CF836439 vs. ExPASy Swiss-Prot
Match: BT3L4_XENTR (Transcription factor BTF3 homolog 4 OS=Xenopus tropicalis GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.308e-21
Identity = 50/102 (49.02%), Postives = 74/102 (72.55%), Query Frame = -2
Query:  327 RIGVNAIPAIEEVNIFKED-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDIFPGIINQLGPDNLDTLRKLAEQFQKQAPNAGSGAPTTQEDAADEVPELV 629
            ++ VN I  IEEVN+ K+D  VI F NPKVQAS++ANT+ ++G  + K++ ++ PGI++QLG D+L +LRKLAEQF +Q  ++ +  P   E+  D+VPELV
Sbjct:   45 KLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEVKQITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKASKPEDIEEEDDDVPELV 146          
The following BLAST results are available for this feature:
BLAST of CF836439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
NACB_ASPTN1.020e-2248.21Nascent polypeptide-associated complex subunit bet... [more]
NACB_AJECN2.967e-2249.56Nascent polypeptide-associated complex subunit bet... [more]
NACB_ASPNC1.127e-2149.11Nascent polypeptide-associated complex subunit bet... [more]
NACB_ASPOR1.473e-2149.11Nascent polypeptide-associated complex subunit bet... [more]
NACB_PHANO2.512e-2146.55Nascent polypeptide-associated complex subunit bet... [more]
NACB_NEOFI4.284e-2147.32Nascent polypeptide-associated complex subunit bet... [more]
NACB_COCIM4.284e-2150.00Nascent polypeptide-associated complex subunit bet... [more]
NACB_ASPFU4.284e-2148.21Nascent polypeptide-associated complex subunit bet... [more]
NACB_ASPCL7.308e-2147.32Nascent polypeptide-associated complex subunit bet... [more]
BT3L4_XENTR7.308e-2149.02Transcription factor BTF3 homolog 4 OS=Xenopus tro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02P14_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02P14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836439 ID=CF836439; Name=CF836439; organism=Citrus sinensis; type=EST; length=630bp
AACCGGATCCGACAACATCAGGACTTACAACAATAATGCACAAATAAAAA
GCCCTTGCAACACGTGCCTCCTGGATTCTGAAAGAGTAAAAGGGTTTTCA
CTGGTTTCACTGGAGCAAAACATTGAATTAAAAAGTAACCATATCTAGTG
TCACAGGGAGAATCAGATAAAACGAGAGAAAGTTGACTCCGAAAAGTAAA
ATAAAAACTCCAAAAACATAGAAAATATATAGAATAACACAAAGTCCCTC
TAAATAAAACTCTCTAAGAAGCAGCGACCGGTTTCTCTGTTTTCACCTCT
GCGGCAGCTTCAAACGTCTCCCCTGCCACAAGCTCTGGGACCTCATCGGC
GGCGTCCTCTTGAGTCGTGGGTGCACCAGATCCTGCATTAGGGGCTTGCT
TCTGAAACTGCTCCGCCAACTTCCTCAGGGTGTCCAAATTATCTGGCCCC
AATTGATTGATAATTCCAGGGAAAATATCCTGCAACTTCTTGGTTTGGGG
GGCACCACTAACTACCCATGTGTTGGCAGCAATTGAAGCTTGCACTTTGG
GATTTAAGAACTGAATAACGACGTCCTCCTTGAAAATGTTAACTTCCTCA
ATTGCAGGAATAGCATTCACTCCTATTCTC
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