CF836441

Overview
NameCF836441
Unique NameCF836441
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length538
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF836441 vs. ExPASy Swiss-Prot
Match: ATX3H_ARATH (Ataxin-3 homolog OS=Arabidopsis thaliana GN=At3g54130 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.133e-14
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = -2 
Query:  310 KECPISSS-DSSNGYGQWLSPEDAERITKSCNT----REGPKRIKLTQQHSDPFLSAEEADRLLEMEDEDLKAAIAASLLD 537
            +ECP+SSS ++SN +GQWLSPEDAERI K+ ++    R       + QQ  +  LS EE     EMED+DLKAAIAASLLD
Sbjct:  178 QECPMSSSSEASNSFGQWLSPEDAERIRKNTSSGSSARNKRSNDNVNQQRRNQALSREEVQAFSEMEDDDLKAAIAASLLD 258
The following BLAST results are available for this feature:
BLAST of CF836441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATX3H_ARATH2.133e-1454.32Ataxin-3 homolog OS=Arabidopsis thaliana GN=At3g54... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02P15_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02P15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836441 ID=CF836441; Name=CF836441; organism=Citrus sinensis; type=EST; length=538bp
TTTTTTTTTTTTTTTTTAATTGCGAAGCTGAAATGTCATTTCTCAACCAT
TTATTTGGTAATGTTAGTTTAGATTTTTGACAAAGTACATTAATGAATGT
ATATAAACAAAAAATGCATTACGTCAAGGATACATATCCAAGTTCACATC
TTCTCTGGCATCAATTATTACATACAATTCAACCAGCAGATAAATGTATG
AACGGAATTAATCTTCTTGTGCAGTTTTCTCTTTGCTAATTTCTTTTTCA
TTTTCCAGGGTGCTTGCTGTGGTGCTGCTGGCTTCCGCAGTAGGCTTAGC
TGGGGAAGAATCCAACAGACTCGCAGCTATTGCAGCCTTCAAGTCCTCAT
CTTCCATCTCCAAAAGCCTATCTGCCTCCTCCGCAGAAAGAAATGGATCA
GAATGCTGTTGAGTCAATTTGATTCTCTTTGGGCCCTCTCTTGTGTTGCA
TGATTTGGTAATCCTCTCCGCATCTTCAGGAGAAAGCCACTGCCCATAAC
CATTGGAAGAATCAGAGGATGAGATGGGGCACTCTTTC
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