CF836444

Overview
NameCF836444
Unique NameCF836444
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length614
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9179 contig Csv1_Contig9179:3..616. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836444 vs. ExPASy Swiss-Prot
Match: PSAK_MEDSA (Photosystem I reaction center subunit psaK, chloroplastic OS=Medicago sativa GN=PSAK PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.197e-42
Identity = 89/109 (81.65%), Postives = 96/109 (88.07%), Query Frame = -2
Query:  245 MATSLMT-MPQFSGLRPQISAAPAQSLVAAQPM-RRKCSGALGARCGFIGSPTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTLAC 565
            MATS+MT +PQF+GLRPQ+  +P Q LVAAQPM RRK  GALG RC FIGS TN+IMV +TTLMLFAGRFGLAPSANRKATAGLKLE RDSGLQTGDPAGFTLADTLAC
Sbjct:    1 MATSMMTTLPQFTGLRPQLKPSPIQGLVAAQPMTRRKGKGALGVRCDFIGSSTNVIMVASTTLMLFAGRFGLAPSANRKATAGLKLETRDSGLQTGDPAGFTLADTLAC 109          
BLAST of CF836444 vs. ExPASy Swiss-Prot
Match: PSAK_ARATH (Photosystem I reaction center subunit psaK, chloroplastic OS=Arabidopsis thaliana GN=PSAK PE=2 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 2.707e-41
Identity = 85/107 (79.44%), Postives = 95/107 (88.79%), Query Frame = -2
Query:  245 ATSLMTMPQFSGLRP-QISAAPAQSLVAAQPMRRKCSGALGARCGFIGSPTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTLAC 562
            +T + T+PQF+GLR  +ISAAP Q L + QPMRRK +GALGA+C FIGS TNLIMVT+TTLMLFAGRFGLAPSANRKATAGL+LE RDSGLQTGDPAGFTLADTLAC
Sbjct:    3 STMMTTLPQFNGLRATKISAAPVQGLASVQPMRRKGNGALGAKCDFIGSSTNLIMVTSTTLMLFAGRFGLAPSANRKATAGLRLEARDSGLQTGDPAGFTLADTLAC 109          
BLAST of CF836444 vs. ExPASy Swiss-Prot
Match: PSAK_HORVU (Photosystem I reaction center subunit psaK, chloroplastic OS=Hordeum vulgare GN=PSAK PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.332e-31
Identity = 72/105 (68.57%), Postives = 83/105 (79.05%), Query Frame = -2
Query:  245 TSLMTMPQFSGLRPQISAAPAQSLVAAQPMRRKCSGALGARCGFIGSPTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTLAC 559
            +++ ++PQF GLR   S    +S+     +RR+ S   G RC +IGS TNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLE R+SGLQTGDPAGFTLADTLAC
Sbjct:    6 SAMTSVPQFHGLRTYSSP---RSMATLPSLRRRRSQ--GIRCDYIGSSTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEARESGLQTGDPAGFTLADTLAC 105          
BLAST of CF836444 vs. ExPASy Swiss-Prot
Match: PSAK_CHLRE (Photosystem I reaction center subunit psaK, chloroplastic OS=Chlamydomonas reinhardtii GN=PSAK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.881e-12
Identity = 37/64 (57.81%), Postives = 44/64 (68.75%), Query Frame = -2
Query:  248 GFIGSPTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKL--EVRDSGLQTGDPAGFTLADTLA 433
            GFIGS TNLIMV +TT  L A RFGLAP+  +  TAGLKL      +G+ + DPAGFT+ D LA
Sbjct:   28 GFIGSSTNLIMVASTTATLAAARFGLAPTVKKNTTAGLKLVDSKNSAGVISNDPAGFTIVDVLA 91          
The following BLAST results are available for this feature:
BLAST of CF836444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PSAK_MEDSA3.197e-4281.65Photosystem I reaction center subunit psaK, chloro... [more]
PSAK_ARATH2.707e-4179.44Photosystem I reaction center subunit psaK, chloro... [more]
PSAK_HORVU4.332e-3168.57Photosystem I reaction center subunit psaK, chloro... [more]
PSAK_CHLRE5.881e-1257.81Photosystem I reaction center subunit psaK, chloro... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_02P17_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02P17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836444 ID=CF836444; Name=CF836444; organism=Citrus sinensis; type=EST; length=614bp
TTTTTTTTTTTTTTTAATCACTAATATCACTTATCATTTATTCTACATAA
TAATAAATAAATTATTTTTAACATCCAAATGAAGCCATCAAAAATTAAAA
CCAGGCAGATAGGTGCAACAGAAATGGCACAGCGAGTATTAACAATCGAT
TTAACATAACAAACTGCTTCGAAAATTTTTACAGAGCACCCAAGTTCTTA
AGGCCAAGGACCACCCCAACACCAATGATGTGACCAACACTGCCACAAGC
CAATGTGTCAGCCAAAGTGAACCCAGCTGGGTCACCAGTTTGCAAGCCAG
AGTCCCTCACTTCAAGCTTCAATCCTGCCGTTGCTTTCCTGTTTGCTGAT
GGAGCCAGCCCAAATCTCCCAGCAAATAGCATCAGGGTTGTTGTTGTCAC
CATTATCAAATTTGTGGGCGAACCAATGAAGCCACAACGAGCACCCAAAG
CTCCACTGCATTTCCTCCTCATTGGCTGGGCTGCTACCAGGCTTTGTGCA
GGAGCTGCTGAGATTTGGGGTCTGAGCCCACTGAACTGTGGCATGGTCAT
CAAAGAAGTTGCCATTTTTCAGCTTTCTACGGAGGAAATTGAATGACCGG
AGAACGAGTAATCC
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