CF836487

Overview
NameCF836487
Unique NameCF836487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3683 contig Csv1_Contig3683:123..831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL12_PRUAR (60S ribosomal protein L12 OS=Prunus armeniaca GN=RPL12 PE=2 SV=1)

HSP 1 Score: 306.605 bits (784), Expect = 8.479e-83
Identity = 154/166 (92.77%), Postives = 162/166 (97.59%), Query Frame = 1
Query:   76 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPLD 573
            MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETA DWKGLRVTVKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKKTKNIKH+G+I+LDDVIEIAK+M+ RSMAK+L+GTVKEIL TCVSVGCTVDGKDPKDLQQEI DGDVEIPLD
Sbjct:    1 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETANDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHSGHISLDDVIEIAKIMKHRSMAKELAGTVKEILRTCVSVGCTVDGKDPKDLQQEIADGDVEIPLD 166          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL123_ARATH (60S ribosomal protein L12-3 OS=Arabidopsis thaliana GN=RPL12C PE=2 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 2.728e-81
Identity = 148/164 (90.24%), Postives = 158/164 (96.34%), Query Frame = 1
Query:   76 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIP 567
            MPPK DPSQ+VDVYVRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAK+WKGLRVTVKLTVQNRQAKV VVPSAAALVIKALKEPERDRKK KNIKHNGNI+ DDVIEIAK+MRPRS+AK+LSGTVKEILGTCVSVGCTVDGKDPKDLQ+EI  GD++IP
Sbjct:    1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPRSIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDIP 164          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL121_ARATH (60S ribosomal protein L12-1 OS=Arabidopsis thaliana GN=RPL12A PE=1 SV=2)

HSP 1 Score: 299.671 bits (766), Expect = 1.036e-80
Identity = 147/164 (89.63%), Postives = 158/164 (96.34%), Query Frame = 1
Query:   76 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIP 567
            MPPK DPSQ+VDVYVRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAK+WKGLRVTVKLTVQNRQAKV VVPSAAALVIKALKEPERDRKK KNIKHNGNI+ DDV EIA++MRPRS+AK+LSGTV+EILGTCVSVGCTVDGKDPKD+QQEI DG+VEIP
Sbjct:    1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPRSIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIP 164          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL122_ARATH (60S ribosomal protein L12-2 OS=Arabidopsis thaliana GN=RPL12B PE=2 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 2.309e-80
Identity = 146/164 (89.02%), Postives = 158/164 (96.34%), Query Frame = 1
Query:   76 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIP 567
            MPPK DPSQ+VDVYVRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAK+WKGLRVTVKLTVQNRQAKV VVPSAAALVIKALKEPERDRKK KNIKHNGNI+ DDV EIA++MRPRS+AK+LSGTV+EILGTCVSVGCTVDGKDPKDLQQEI +G++EIP
Sbjct:    1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPRSIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIP 164          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL12_SCHPO (60S ribosomal protein L12 OS=Schizosaccharomyces pombe GN=rpl1201 PE=1 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 7.973e-65
Identity = 118/164 (71.95%), Postives = 145/164 (88.41%), Query Frame = 1
Query:   76 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIP 567
            MPPKFDP++V  +++R  GGEV   S+LAPKIGPLGLSPKK+GEDIAK T KDWKGLRVTVKLT+QNRQA V+VVPSA+ALVIKALKEP RDRKK KN+ H+GN++LD++IE+A+ MR +S+AK+LSGTVKEILGT  SVGCTVDGK+P D+Q+EI +G++EIP
Sbjct:    1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKAT-KDWKGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKSLAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNGEIEIP 163          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL12_CHLRE (60S ribosomal protein L12 (Fragment) OS=Chlamydomonas reinhardtii GN=RPL12 PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 7.973e-65
Identity = 123/155 (79.35%), Postives = 137/155 (88.39%), Query Frame = 1
Query:  103 VVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIP 567
            VV+V VRVTGGEVG ASSLAPKIGPLGLSPKKIGEDIAKET KDWKGLR+TVKLTVQNRQAK++V+PSAAALVIKALKEP RDRKK KNIKH G++T+ D+IEIA+VMRPRS AKDL+   KEILGT VSVGC VDGKDP+D+   I DG +EIP
Sbjct:    1 VVEVCVRVTGGEVGDASSLAPKIGPLGLSPKKIGEDIAKETLKDWKGLRITVKLTVQNRQAKISVIPSAAALVIKALKEPARDRKKEKNIKHTGSVTMSDIIEIARVMRPRSCAKDLANGCKEILGTAVSVGCKVDGKDPRDVISAIDDGAIEIP 155          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL12_CAEEL (60S ribosomal protein L12 OS=Caenorhabditis elegans GN=rpl-12 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.462e-63
Identity = 113/164 (68.90%), Postives = 141/164 (85.98%), Query Frame = 1
Query:   76 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIP 567
            MPPKFDP+++  VY+R  GGEVGA S+LAPK+GPLGLSPKKIGEDIAK T +DWKGL+VT KLT+QNR AK+ VVPSAA+L++K LKEP RDRKK KN+KHNG++T+D +I+IA++MRPRSMAK L GTVKEILGT  SVGCT+DG+ P D+ + I +G++EIP
Sbjct:    1 MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKAT-QDWKGLKVTCKLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRPRSMAKKLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANGEIEIP 163          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL12_CAEBR (60S ribosomal protein L12 OS=Caenorhabditis briggsae GN=rpl-12 PE=3 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.462e-63
Identity = 113/164 (68.90%), Postives = 141/164 (85.98%), Query Frame = 1
Query:   76 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIP 567
            MPPKFDP+++  VY+R  GGEVGA S+LAPK+GPLGLSPKKIGEDIAK T +DWKGL+VT KLT+QNR AK+ VVPSAA+L++K LKEP RDRKK KN+KHNG++T+D +I+IA++MRPRSMAK L GTVKEILGT  SVGCT+DG+ P D+ + I +G++EIP
Sbjct:    1 MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKAT-QDWKGLKVTCKLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRPRSMAKKLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANGEIEIP 163          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL12_RAT (60S ribosomal protein L12 OS=Rattus norvegicus GN=Rpl12 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 9.746e-63
Identity = 115/164 (70.12%), Postives = 139/164 (84.76%), Query Frame = 1
Query:   76 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIP 567
            MPPKFDP+++  VY+R TGGEVGA S+LAPKIGPLGLSPKK+G+DIAK T  DWKGLR+TVKLT+QNRQA++ VVPSA+AL+IKALKEP RDRKK KNIKHNGNIT D+++ IA+ MR RS+A++LSGT+KEILGT  SVGC VDG+ P D+  +I  G VE P
Sbjct:    1 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATG-DWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHNGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECP 163          
BLAST of CF836487 vs. ExPASy Swiss-Prot
Match: RL12_MOUSE (60S ribosomal protein L12 OS=Mus musculus GN=Rpl12 PE=1 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 2.836e-62
Identity = 115/164 (70.12%), Postives = 139/164 (84.76%), Query Frame = 1
Query:   76 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIP 567
            MPPKFDP++V  VY+R TGGEVGA S+LAPKIGPLGLSPKK+G+DIAK T  DWKGLR+TVKLT+QNRQA++ VVPSA+AL+IKALKEP RDRKK KNIKH+GNIT D+++ IA+ MR RS+A++LSGT+KEILGT  SVGC VDG+ P D+  +I  G VE P
Sbjct:    1 MPPKFDPNEVKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATG-DWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECP 163          
The following BLAST results are available for this feature:
BLAST of CF836487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RL12_PRUAR8.479e-8392.7760S ribosomal protein L12 OS=Prunus armeniaca GN=R... [more]
RL123_ARATH2.728e-8190.2460S ribosomal protein L12-3 OS=Arabidopsis thalian... [more]
RL121_ARATH1.036e-8089.6360S ribosomal protein L12-1 OS=Arabidopsis thalian... [more]
RL122_ARATH2.309e-8089.0260S ribosomal protein L12-2 OS=Arabidopsis thalian... [more]
RL12_SCHPO7.973e-6571.9560S ribosomal protein L12 OS=Schizosaccharomyces p... [more]
RL12_CHLRE7.973e-6579.3560S ribosomal protein L12 (Fragment) OS=Chlamydomo... [more]
RL12_CAEEL7.462e-6368.9060S ribosomal protein L12 OS=Caenorhabditis elegan... [more]
RL12_CAEBR7.462e-6368.9060S ribosomal protein L12 OS=Caenorhabditis briggs... [more]
RL12_RAT9.746e-6370.1260S ribosomal protein L12 OS=Rattus norvegicus GN=... [more]
RL12_MOUSE2.836e-6270.1260S ribosomal protein L12 OS=Mus musculus GN=Rpl12... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_03A20_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03A20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836487 ID=CF836487; Name=CF836487; organism=Citrus sinensis; type=EST; length=709bp
AGGGCAAATCGCAAAAGACAGGGCAAGCAAAAAGCACTTCACACACTCTT
TGTAGCCGTAACCAGCAGAGCAATCATGCCGCCGAAGTTCGACCCGAGCC
AAGTGGTGGACGTGTACGTCCGCGTGACCGGTGGCGAGGTGGGAGCCGCC
AGTTCCCTCGCCCCAAAGATCGGTCCCCTCGGTCTCTCCCCCAAGAAAAT
CGGAGAGGACATCGCCAAGGAAACCGCCAAGGACTGGAAGGGCTTACGTG
TCACCGTCAAGCTCACCGTCCAGAACCGTCAGGCCAAGGTCGCCGTCGTT
CCCTCCGCCGCCGCCCTGGTCATTAAAGCCCTCAAGGAACCCGAGAGGGA
CAGGAAGAAGACCAAGAACATCAAGCACAACGGCAACATTACCCTCGATG
ACGTCATCGAAATCGCAAAAGTGATGCGGCCCAGGTCGATGGCTAAGGAT
TTGAGTGGCACCGTTAAGGAGATTTTGGGCACATGCGTTTCTGTTGGGTG
TACGGTCGATGGCAAGGACCCTAAGGACCTGCAGCAGGAGATCACTGATG
GTGATGTCGAAATTCCTCTTGATTGAAGACTCTGTTTGTGAGGGGGTCTA
TTTTAGATTTTAATTTTTGTTTTTTATTTCTATATATCAGTGCCTTTTTT
TTTATTATCAGTTTTGGATCTTTACAAGGATTTTGATGATGTCTCCAATT
ATTCGAGCT
back to top