CF836520

Overview
NameCF836520
Unique NameCF836520
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836520 vs. ExPASy Swiss-Prot
Match: REMO_SOLTU (Remorin OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 9.363e-51
Identity = 114/174 (65.52%), Postives = 135/174 (77.59%), Query Frame = -1
Query:  141 VADDKTVIPS---PPAEDK--PEESKALAVVD-KAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAVXXXXXXXXXXXXXXXXEYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCF 644
            VAD+K ++     PPAE+K  P++SKAL VV+ KAPE   PA EK  EGS++RDAVLARV TEKR+SLI+AWEESEKS+AENKA KK+S+I +WENS+KA +                EY EKMKNK+AL+HKEAEEKRAMIEAKRGEDLLKAEELAAKYRATG+APKK+L  F
Sbjct:   29 VADEKAIVAPALPPPAEEKEKPDDSKALVVVETKAPE---PADEKK-EGSIDRDAVLARVATEKRVSLIKAWEESEKSKAENKAQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGTAPKKILGIF 198          
BLAST of CF836520 vs. ExPASy Swiss-Prot
Match: Y3126_ARATH (Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.226e-42
Identity = 95/169 (56.21%), Postives = 116/169 (68.64%), Query Frame = -1
Query:  141 DVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAVXXXXXXXXXXXXXXXXEYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCF 647
            DVA++K  I +PP E   ++SKAL VV+K    E PA  K    S++RD  LA +  EKR+S +RAWEESEKS+AENKA KK++ + +WENS+KAAV                EY E+MKNK+A IHKEAEE+RAMIEAKRGED+LKAEE AAKYRATG  PK    CF
Sbjct:   48 DVAEEK--IQNPPPEQIFDDSKALTVVEKP--VEEPAPAKPASASLDRDVKLADLSKEKRLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAERMKNKVAAIHKEAEERRAMIEAKRGEDVLKAEETAAKYRATGIVPKATCGCF 212          
BLAST of CF836520 vs. ExPASy Swiss-Prot
Match: REMO_ARATH (Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.038e-41
Identity = 94/169 (55.62%), Postives = 118/169 (69.82%), Query Frame = -1
Query:  141 DVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAVXXXXXXXXXXXXXXXXEYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCF 647
            +VAD+K  I +PP    P ESKALAVV+K  E   P  +K++ GS +RD +LA +E EK+ S I+AWEESEKS+AEN+A KK+S + +WENS+KAAV                +Y EKMKNK+A IHK AEEKRAM+EAK+GE+LLKAEE+ AKYRATG  PK    CF
Sbjct:   30 EVADEK--IHNPP----PVESKALAVVEKPIEEHTP--KKASSGSADRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEAQLRKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGEELLKAEEMGAKYRATGVVPKATCGCF 190          
The following BLAST results are available for this feature:
BLAST of CF836520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
REMO_SOLTU9.363e-5165.52Remorin OS=Solanum tuberosum PE=1 SV=1[more]
Y3126_ARATH1.226e-4256.21Uncharacterized protein At3g61260 OS=Arabidopsis t... [more]
REMO_ARATH1.038e-4155.62Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1[more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_03B16_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836520 ID=CF836520; Name=CF836520; organism=Citrus sinensis; type=EST; length=884bp
TTTTTTTTTTTTTTTTTAATGAACATTTTTCCAATTCTTCATAATGAATT
CAAACACAAACACTAAATAAACAAATGAATGCTCAAAGGAAATATACATA
GAATTAAATTTATCAAACAAGCTTGAGAATTTTAACTTCCAAAACAACTA
AGGAGCTTCTTGGGGGCAGAGCCCGTCGCTCGATACTTGGCAGCCAGCTC
CTCTGCCTTGAGAAGGTCTTCCCCTCTCTTAGCTTCAATCATTGCCCTCT
TTTCTTCTGCTTCCTTGTGGATTAGTGCCATCTTGTTTTTCATTTTCTCT
ACATACTCAGCCTTCTTCTTCTCCAATTGTTCCTCAATCTTTTTTAGCTC
AGCTTCCACAGCTGCTTTCCGGCTGTTCTCCCATGAAACAATGGAAGATA
GCTTTTTATGAGCTTTGTTCTCTGCTTGCGACTTCTCACTTTCTTCCCAT
GCTCTAATCAGCGAAATCCTCTTCTCCGTTTCAACTCTTGCAAGCACCGC
ATCTCTGTTTACAGAGCCCTCTGTACTTTTTTCACCAGCAGGAGGTTCAG
CCTCAGGAGCCTTATCAACAACAGCAAGGGCTTTGGATTCCTCAGGCTTA
TCCTCAGCAGGTGGAGATGGAATTACGGTCTTGTCATCGGCAACATCTTT
AGGAGGCTCAGCTGCTGCCGGAGCGGCTGGTTCTGTAGAAGGAGGAGGCG
GCGGCTCGGTCGGGGTTTCAGTTTCAAGCTTCTTTGGTTCCTCCTCTGCC
ATGTCTCTCTCTGCTCCGAAACCTTAAGCTTAAAGCAAAGCTGAAGATCT
TTACAAAGCAAGTAACAAGGAGAAAGTTGGTGAATGAATGAGAAAGAAGA
AATAAAAAGAGGATAGAGGTTGAAATATATATAA
back to top