CF836525

Overview
NameCF836525
Unique NameCF836525
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF836525 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.198e-26
Identity = 54/59 (91.53%), Postives = 57/59 (96.61%), Query Frame = -2 
Query:  155 PEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFAPK 331
            P K+KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL AHLADPGHAT+FAAF+PK
Sbjct:  212 PAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFSPK 270
[Close]
BLAST of CF836525 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.198e-26
Identity = 54/59 (91.53%), Postives = 57/59 (96.61%), Query Frame = -2 
Query:  155 PEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFAPK 331
            P K+KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL AHLADPGHAT+FAAF+PK
Sbjct:  212 PAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFSPK 270
The following BLAST results are available for this feature:
BLAST of CF836525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CB12_SOLLC4.198e-2691.53Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY4.198e-2691.53Chlorophyll a-b binding protein, chloroplastic OS=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_03B19_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03B19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836525 ID=CF836525; Name=CF836525; organism=Citrus sinensis; type=EST; length=824bp
TTTTTTTTTTTGATCCCAAGTCTTTGCTACATAGATAGAGGCCCCTATAA
AAAGTNTNTATNATANNAACCTTTCCCTAAGAGAACCCCTTAATCCTTTG
ATCTCAAGCTTCCTCTTGGCCCAAATTTCTCTCCCTTTGCTCGTCATCAT
CTCACTTGGGGGCGAAGGCAGCAAAAACGGTGGCATGACCAGGATCAGCA
AGGTGAGCAATGAGATTGTCAATGGGGCCGGTGCCAGTGTAAATGTGCTG
GAACCAAGCACCCATCACAGCCAACATAGCCAATCTTCCATTCTTGATCT
CCTTAGTCCTCAGCTCCTTTACCTTCTCGGGCGAACCGGATCCCCAGCCC
TAAGCTGCCTAACTCTCTCTCCCTTGTCGTCGTTTCACCAACACACCCTC
TCTCGTCAGTGTTTCAGCCTGTCAGTCGCCAGCCCACCACCATTTTGATT
GTGCCGATTGACATGACAGACTCGCAGCTTCCATCTTGTCGACATCGTGG
CTTCCATCTCTTCGCCATTGCAGTTTCCATCTTGTCGGCGTTGCAGCTTC
CATCTTGTTGGGGTTGTGGCTTCCATCTCATTGGCGTTGCAGTTTCCATC
TCATCTGCATTGTAGCTTCCATCTTGTTGGCGTCGTCCCATCTAACTCAT
CGGTTTTGCAACTCCTTCACTTGATGGTAAGTAGTATCTTGACTCTTCAC
GGTTTCAGTGTGTATAATTTCTTAAAGCTAATTAAAGAAAAAATCTGTTG
GTTTTGTGTAAATTGGTGATTGAATAATCAAAGCGATAAATTGTTGTTAA
TGACTTAATTTTAAAAAAAAAAAA
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