CF836535

Overview
NameCF836535
Unique NameCF836535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836535 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.669e-15
Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = -2
Query:  435 DPNNTPIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCGEQALSVLNGTQLGGQSISLSWGGS 665
            DPNNT +F+GGL   VT+D L+  F  +G +V+VKIP GK CGFVQ+ +R   E A++ + G  +    + LSWG S
Sbjct:  309 DPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWGRS 385          
BLAST of CF836535 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 6.098e-15
Identity = 39/75 (52.00%), Postives = 50/75 (66.67%), Query Frame = -2
Query:  441 DPNNTPIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCGEQALSVLNGTQLGGQSISLSWG 665
            D  N+ +FVGGL   V+++ LK +F  +GE+V+VKIP GK CGFVQF NR   E A++ L G  LG   I LSWG
Sbjct:  299 DTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWG 373          
BLAST of CF836535 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.964e-15
Identity = 40/102 (39.22%), Postives = 57/102 (55.88%), Query Frame = -2
Query:  360 DPNNTPIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCGEQALSVLNGTQLGGQSISLSWGGSPSNKQSDQAQWNGGGYYGFAQGYEA 665
            DP NT +FVGGL P  T+  L+++F  +G +++V+IP GK CGFV+F  R   E ++  L G  +GG  I LSWG   S+     +   G   Y  + G  A
Sbjct:  356 DPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGRPSSSNAKTNSTIMGASQYMSSNGLRA 457          
BLAST of CF836535 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.661e-12
Identity = 30/75 (40.00%), Postives = 51/75 (68.00%), Query Frame = -2
Query:  441 DPNNTPIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCGEQALSVLNGTQLGGQSISLSWG 665
            DP NT +FVGGL  ++++  L+  F  +G ++++KIP GK CGFVQ++ ++  E+A++ + G  +G   I L+WG
Sbjct:  293 DPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWG 367          
The following BLAST results are available for this feature:
BLAST of CF836535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
NAM8_YEAST4.669e-1546.75Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 P... [more]
YG41_SCHPO6.098e-1552.00Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
NGR1_YEAST7.964e-1539.22Negative growth regulatory protein NGR1 OS=Sacchar... [more]
CSX1_SCHPO1.661e-1240.00RNA-binding post-transcriptional regulator csx1 OS... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_03C01_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836535 ID=CF836535; Name=CF836535; organism=Citrus sinensis; type=EST; length=735bp
TTTTTTTTTTTTTTTTTATCAAAATAACATCAAGTTCGAAAATCCTGCAA
TATCTAGTCTGCATGCTACAACCAATCCCATAAATAAATGCTTCAAATAC
ACAACATTGCAAATACTAAATAAAAAGAGAAAAAAAAAATCCATAAACTA
TCTCCAAGCACTCACATCATCCTCAACAACCAAACAACAAATACCTTCCT
AAAATTCAATTTGATTATGGCTACCCCAGCTTCAAAACTTGCACCATAAA
TACATCACTGCTGGGGCTGTTGGTAAAACCCTGGCTGTTGGAAAGTCCCA
TATCCAGGAAAGCCCCCATAGTACATGTTCGGGTCTTGGGTAGGAGGCGC
ATATCCATATGCCTCGTATCCTTGTGCAAAACCATAGTATCCACCACCGT
TCCATTGGGCCTGATCCGACTGTTTGTTTGAAGGACTACCCCCCCATGAC
AGACTAATGCTTTGTCCTCCTAATTGGGTGCCATTCAAAACTGATAGTGC
TTGCTCCCCACAAGTTCTGTTAGCAAACTGAACAAACCCGCAGCGCTTGC
CCGCTGGAATTTTCACATGAACTAACTCACCATATTGACCAAAAACTGTT
TTCAAAATGTCATCTGTAACACTAGGATCCAAACCCCCAACAAATATTGG
TGTATTATTTGGATCATTCTCGCCCTGGCTTCCTTGGGTATTTTGATAAG
TAACTTTCTGATATTGCTGGCCAGTGGCAGCTTTC
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