CF836537

Overview
NameCF836537
Unique NameCF836537
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length514
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13525 contig Csv1_Contig13525:133..646. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF836537 vs. ExPASy Swiss-Prot
Match: EIF3M_DICDI (Eukaryotic translation initiation factor 3 subunit M OS=Dictyostelium discoideum GN=eif3m PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.629e-13
Identity = 31/79 (39.24%), Postives = 51/79 (64.56%), Query Frame = -2 
Query:  277 QIPYGLIKDTLQINNDEVEKWVVKARTAKLMACKMDQMNQVVIVRRCTERIFGQHQWQTLRTKLSTWRANVANVISTIQ 513
            ++PY LI   LQI+ +EVE WV+ A    L+  K+DQ+N++V V   T+R+F + QW  L  + S W+++V N++  I+
Sbjct:  308 KVPYSLISKMLQIDENEVEMWVINAMEGDLLDAKLDQLNRIVNVNSSTQRVFNKSQWSQLGQRFSVWKSSVKNLLQVIE 386
[Close]
BLAST of CF836537 vs. ExPASy Swiss-Prot
Match: EIF3M_PHANO (Eukaryotic translation initiation factor 3 subunit M OS=Phaeosphaeria nodorum GN=SNOG_03517 PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.801e-12
Identity = 31/79 (39.24%), Postives = 50/79 (63.29%), Query Frame = -2 
Query:  274 IPYGLIKDTLQINNDEVEKWVVKARTAKLMACKMDQMNQVVIVRRCTERIFGQHQWQTLRTKLSTWRANVANVISTIQA 510
            +PY  I   LQI+++EVE WV+    A L+  K+ Q+NQ  ++ R T R+FG +QW+ + ++L  WR ++  V+  IQA
Sbjct:  318 LPYDKIAKALQISSEEVEMWVIDVIRAGLVEGKLSQLNQTFLIHRSTYRVFGDNQWREVSSRLDMWRNSLTGVLQVIQA 396
The following BLAST results are available for this feature:
BLAST of CF836537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
EIF3M_DICDI1.629e-1339.24Eukaryotic translation initiation factor 3 subunit... [more]
EIF3M_PHANO1.801e-1239.24Eukaryotic translation initiation factor 3 subunit... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_03C02_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836537 ID=CF836537; Name=CF836537; organism=Citrus sinensis; type=EST; length=514bp
TTTTTTTTTTTTTTTTGTCAAATTTCAATTTTTCTTTTTTTAATCCCTAG
TATGATTCTTCTTCGGCAATCAGCCCCTCCCCCGCCACCCCCACCATATT
ACAAATGTCTGGCCTTCACCATCTCTTCTAGTCTAAAGATAACAGAGGAC
CGGGCCTCCTTTCAGACAATGTGGTGACAAAATAAAATTTTTAAAAAACA
ACTCATCTAGCTAGCGAATTATTAACCCCTGCACAGCCTGTGAGTGTGAG
CCATCTTCAGTTATCTTGTTAGTAGCTTGAATGGTGCTGATTACATTTGC
AACATTTGCCCTCCAAGTTGAGAGCTTTGTTCTAAGAGTTTGCCACTGAT
GTTGCCCAAATATGCGCTCAGTGCAACGTCTCACAATTACAACTTGGTTC
ATCTGGTCCATTTTGCAGGCCATTAACTTGGCAGTTCTTGCCTTAACAAC
CCATTTTTCCACCTCATCATTATTGATCTGAAGTGTATCCTTGATTAAGC
CATACGGAATTTGG
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