CF836542

Overview
NameCF836542
Unique NameCF836542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836542_ssr298 microsatellite CF836542_ssr298:298..312. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig760 contig Csv1_Contig760:78..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836542 vs. ExPASy Swiss-Prot
Match: DNJH_CUCSA (DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 6.217e-77
Identity = 154/207 (74.40%), Postives = 154/207 (74.40%), Query Frame = 1
Query:   52 MFGRAPKKSDNTKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDI-XXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRC 669
            MFGR PKKSDNTKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKE        HDPFDI                        EDVIHPLKVSLEDLYNGTSKKLSLSRNVI                    QGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRC
Sbjct:    1 MFGR-PKKSDNTKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKE-GMGGGGGHDPFDIFQSFFGGSPFGGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICSKCKGKGSKSGASMKCPGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRC 205          
BLAST of CF836542 vs. ExPASy Swiss-Prot
Match: DNJH_ATRNU (DnaJ protein homolog ANJ1 OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 8.403e-74
Identity = 142/207 (68.60%), Postives = 151/207 (72.95%), Query Frame = 1
Query:   52 MFGRAPKKSDNTKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDI-XXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRC 669
            MFGRAPKKSD+T+YYEILGV K+AS +DLKKAY+KAAIKNHPDKGGDPEKFKELA AYEVLSDPEKREIYDQYGEDALKE        HDPFDI                        EDV+HPLKVSLEDL+ GT+KKLSLSRNVI                    QG+GMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRC
Sbjct:    1 MFGRAPKKSDSTRYYEILGVPKDASPEDLKKAYKKAAIKNHPDKGGDPEKFKELAHAYEVLSDPEKREIYDQYGEDALKEGMGGGGGMHDPFDIFQSFFGGSPFGGVGSSRGRRQRRGEDVVHPLKVSLEDLFTGTTKKLSLSRNVICSKCTGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRC 207          
BLAST of CF836542 vs. ExPASy Swiss-Prot
Match: DNJH2_ALLPO (DnaJ protein homolog 2 OS=Allium porrum GN=LDJ2 PE=2 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 1.872e-73
Identity = 140/207 (67.63%), Postives = 149/207 (71.98%), Query Frame = 1
Query:   52 MFGRAPKKSDNTKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDI-XXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRC 669
            MFGRAPKKSDNTKYYE+LGVSKNA+ +DLKKAYRKAAIKNHPDKGGDPEKFKE+ QAYEVL+DPEKREIYDQYGE+ LKE        HDPFDI                        EDV+HPLKVSLEDLYNGTSKKLSLSRNV+                    QGSGMKVSIR LGP MIQQMQHPCNECKGTGE I+DKDRC
Sbjct:    1 MFGRAPKKSDNTKYYEVLGVSKNATPEDLKKAYRKAAIKNHPDKGGDPEKFKEIGQAYEVLNDPEKREIYDQYGEEGLKEGMGGGGGVHDPFDIFQSFFGGGGFGGGGSSRGRRQRRGEDVVHPLKVSLEDLYNGTSKKLSLSRNVLCTKCKGKGSKSGASMNCASCQGSGMKVSIRQLGPGMIQQMQHPCNECKGTGEMISDKDRC 207          
BLAST of CF836542 vs. ExPASy Swiss-Prot
Match: DNAJ3_ARATH (Chaperone protein dnaJ 3 OS=Arabidopsis thaliana GN=ATJ3 PE=1 SV=2)

HSP 1 Score: 267.314 bits (682), Expect = 5.098e-71
Identity = 138/207 (66.67%), Postives = 146/207 (70.53%), Query Frame = 1
Query:   52 MFGRAP-KKSDNTKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRC 669
            MFGR P KKSDNTK+YEILGV K+AS +DLKKAY+KAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKE        HDPFDI                       EDV+HPLKVSLED+Y GT KKLSLSRN +                    QGSGMKVSIR LGP MIQQMQH CNECKGTGETIND+DRC
Sbjct:    1 MFGRGPSKKSDNTKFYEILGVPKSASPEDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGGHDPFDIFSSFFGGGPFGGNTSRQRRQRRGEDVVHPLKVSLEDVYLGTMKKLSLSRNALCSKCNGKGSKSGASLKCGGCQGSGMKVSIRQLGPGMIQQMQHACNECKGTGETINDRDRC 207          
BLAST of CF836542 vs. ExPASy Swiss-Prot
Match: DNAJ2_ARATH (Chaperone protein dnaJ 2 OS=Arabidopsis thaliana GN=ATJ2 PE=1 SV=2)

HSP 1 Score: 252.677 bits (644), Expect = 1.299e-66
Identity = 130/208 (62.50%), Postives = 144/208 (69.23%), Query Frame = 1
Query:   52 MFGRAP-KKSDNTKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDI-XXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRC 669
            MFGR P +KSDNTK+YEILGV K A+ +DLKKAY+KAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKE        HDPFDI                        EDV+HPLKVSLED+Y GT+KKLSLSR  +                    QGSGMK+SIR  GP M+QQ+QH CN+CKGTGETIND+DRC
Sbjct:    1 MFGRGPSRKSDNTKFYEILGVPKTAAPEDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGGHDPFDIFSSFFGSGGHPFGSHSRGRRQRRGEDVVHPLKVSLEDVYLGTTKKLSLSRKALCSKCNGKGSKSGASMKCGGCQGSGMKISIRQFGPGMMQQVQHACNDCKGTGETINDRDRC 208          
BLAST of CF836542 vs. ExPASy Swiss-Prot
Match: DNJH1_ALLPO (DnaJ protein homolog 1 (Fragment) OS=Allium porrum GN=DNAJ1 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 5.110e-63
Identity = 126/186 (67.74%), Postives = 130/186 (69.89%), Query Frame = 1
Query:  115 KNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDI-XXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRC 669
            KNAS DDLKKAYRKAAIKNHPDKGGDPEKFKELAQAY+VLSDPEKREIYDQYGEDALKE        HDPFDI                        EDV+HPLKVSLE+LYNGTSKKLSLSRNVI                    QGSGMKVSIR LGP MIQQMQHPCN+CKGTGE INDKDRC
Sbjct:    1 KNASPDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYDVLSDPEKREIYDQYGEDALKEGMGGGGGDHDPFDIFQSFFGGGGFGGGGSSRGRRQRRGEDVVHPLKVSLEELYNGTSKKLSLSRNVICSKCNGKGSKSGASMRCASCQGSGMKVSIRQLGPGMIQQMQHPCNDCKGTGEMINDKDRC 186          
BLAST of CF836542 vs. ExPASy Swiss-Prot
Match: DNJA4_MOUSE (DnaJ homolog subfamily A member 4 OS=Mus musculus GN=Dnaja4 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.377e-41
Identity = 91/196 (46.43%), Postives = 116/196 (59.18%), Query Frame = 1
Query:   85 TKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP-EKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRC 669
            T+YY+ILGV  +AS +++KKAYRK A+K HPDK  D  EKFK ++QAYEVLSDP+KR+IYDQ GE A+KE          P DI                       ++V+H L V+LEDLYNG +KKL+L +NVI                    +G GM+V I+ +GP M+QQ+Q  C ECKG GE IN KDRC
Sbjct:    5 TQYYDILGVKPSASPEEIKKAYRKLALKYHPDKNPDEGEKFKLISQAYEVLSDPKKRDIYDQGGEQAIKEGGSGSPSFSSPMDIFDMFFGGGGRMTRERRG------KNVVHQLSVTLEDLYNGITKKLALQKNVICEKCEGIGGKKGSVEKCPLCKGRGMQVHIQQIGPGMVQQIQTVCIECKGQGERINPKDRC 194          
BLAST of CF836542 vs. ExPASy Swiss-Prot
Match: DNJA2_RAT (DnaJ homolog subfamily A member 2 OS=Rattus norvegicus GN=Dnaja2 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.377e-41
Identity = 88/197 (44.67%), Postives = 115/197 (58.38%), Query Frame = 1
Query:   82 NTKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP-EKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRC 669
            +TK Y+ILGV   AS+++LKKAYRK A + HPDK  +  +KFKE++ AYEVLS+PEKRE+YD+YGE  L+E         D F                         ED++HPLKVSLEDLYNG + KL LS+NV+                    +G G+++ IR L P M+QQMQ  C++C G GE IN+KDRC
Sbjct:    6 DTKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKRELYDRYGEQGLREGSGGGGGMDDIFSHIFGGGLFGFMGNQSRSRNGRRRGEDMMHPLKVSLEDLYNGKTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCNGEGEVINEKDRC 202          
BLAST of CF836542 vs. ExPASy Swiss-Prot
Match: DNJA2_MOUSE (DnaJ homolog subfamily A member 2 OS=Mus musculus GN=Dnaja2 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.377e-41
Identity = 88/197 (44.67%), Postives = 115/197 (58.38%), Query Frame = 1
Query:   82 NTKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP-EKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRC 669
            +TK Y+ILGV   AS+++LKKAYRK A + HPDK  +  +KFKE++ AYEVLS+PEKRE+YD+YGE  L+E         D F                         ED++HPLKVSLEDLYNG + KL LS+NV+                    +G G+++ IR L P M+QQMQ  C++C G GE IN+KDRC
Sbjct:    6 DTKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKRELYDRYGEQGLREGSGGGGGMDDIFSHIFGGGLFGFMGNQSRSRNGRRRGEDMMHPLKVSLEDLYNGKTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCNGEGEVINEKDRC 202          
BLAST of CF836542 vs. ExPASy Swiss-Prot
Match: DNJA2_HUMAN (DnaJ homolog subfamily A member 2 OS=Homo sapiens GN=DNAJA2 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.377e-41
Identity = 88/197 (44.67%), Postives = 115/197 (58.38%), Query Frame = 1
Query:   82 NTKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP-EKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRC 669
            +TK Y+ILGV   AS+++LKKAYRK A + HPDK  +  +KFKE++ AYEVLS+PEKRE+YD+YGE  L+E         D F                         ED++HPLKVSLEDLYNG + KL LS+NV+                    +G G+++ IR L P M+QQMQ  C++C G GE IN+KDRC
Sbjct:    6 DTKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKRELYDRYGEQGLREGSGGGGGMDDIFSHIFGGGLFGFMGNQSRSRNGRRRGEDMMHPLKVSLEDLYNGKTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCNGEGEVINEKDRC 202          
The following BLAST results are available for this feature:
BLAST of CF836542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNJH_CUCSA6.217e-7774.40DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 P... [more]
DNJH_ATRNU8.403e-7468.60DnaJ protein homolog ANJ1 OS=Atriplex nummularia P... [more]
DNJH2_ALLPO1.872e-7367.63DnaJ protein homolog 2 OS=Allium porrum GN=LDJ2 PE... [more]
DNAJ3_ARATH5.098e-7166.67Chaperone protein dnaJ 3 OS=Arabidopsis thaliana G... [more]
DNAJ2_ARATH1.299e-6662.50Chaperone protein dnaJ 2 OS=Arabidopsis thaliana G... [more]
DNJH1_ALLPO5.110e-6367.74DnaJ protein homolog 1 (Fragment) OS=Allium porrum... [more]
DNJA4_MOUSE9.377e-4146.43DnaJ homolog subfamily A member 4 OS=Mus musculus ... [more]
DNJA2_RAT9.377e-4144.67DnaJ homolog subfamily A member 2 OS=Rattus norveg... [more]
DNJA2_MOUSE9.377e-4144.67DnaJ homolog subfamily A member 2 OS=Mus musculus ... [more]
DNJA2_HUMAN9.377e-4144.67DnaJ homolog subfamily A member 2 OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03C04_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836542 ID=CF836542; Name=CF836542; organism=Citrus sinensis; type=EST; length=671bp
CTCGCCGTCTCGCGTCTACTCTGAAGATCTGAAATTTTTTAGTACAAGAA
GATGTTCGGAAGAGCGCCAAAGAAAAGCGATAACACAAAGTACTATGAGA
TTCTCGGAGTCTCGAAAAACGCTTCGCAAGATGATCTGAAGAAGGCTTAT
AGGAAAGCCGCCATCAAAAACCATCCTGACAAGGGCGGTGATCCTGAGAA
GTTTAAAGAGTTGGCACAAGCGTATGAGGTTCTGAGTGACCCAGAGAAGC
GTGAAATATATGATCAATACGGCGAGGATGCGCTTAAAGAGGGAATGGGT
GGTGGTGGTGGTGCCCATGACCCATTCGACATATTCCAATCCTTCTTCGG
TGGCAGCCCATTTGGTGGTGGGAGCAGCAGAGGAAGAAGGCAAAGGAGGG
GAGAGGACGTAATCCATCCCCTCAAGGTTTCGTTGGAGGATCTGTACAAT
GGGACATCTAAGAAGCTCTCGCTCTCCCGCAATGTAATCTGCACCAAGTG
CAAAGGGAAGGGGTCTAAGTCAGGTGCATCAATGAAATGTTCTGGCTGCC
AGGGATCTGGAATGAAAGTTTCAATAAGACACCTTGGCCCCTCTATGATT
CAACAAATGCAGCATCCTTGCAATGAGTGCAAGGGTACTGGAGAAACAAT
CAATGACAAGGATCGCTGCCC
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