CF836549 | Citrus Genome Database

Overview


Name	CF836549
Unique Name	CF836549
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	807

Libraries


Library Name	Type
Washington Navel Orange Shoot Meristem cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF836549 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 1.343e-62
Identity = 65/104 (62.50%), Postives = 79/104 (75.96%), Query Frame = -2

Query:  495 EIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMT 806
            EIAAF  QT HETTGGW  AP G YAWGYC++R+ +P++              QYYGRGPIQ++WN NY +CG A+GVDLLNNPDL+ATDPV+SFK+A+WFWMT
Sbjct:  122 EIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLREQNPSTYCQASSEFPCASGKQYYGRGPIQISWNYNYGQCGRAIGVDLLNNPDLVATDPVISFKTALWFWMT 225

HSP 2 Score: 111.309 bits (277), Expect = 1.343e-62
Identity = 51/88 (57.95%), Postives = 63/88 (71.59%), Query Frame = -1

Query:  223 PKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 486
            PKPSCH+VI   W PS+ D  AGRLPGYG  TNIINGG+ECG   +  V++RIGF+  +C  FGI  GDNLDC +QRP+G +L   S+
Sbjct:  229 PKPSCHDVITGGWTPSSADRAAGRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRYCDIFGIGYGDNLDCYSQRPFGSSLPLSSI 316

[Close]

BLAST of CF836549 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 1.750e-62
Identity = 66/105 (62.86%), Postives = 77/105 (73.33%), Query Frame = -2

Query:  495 EIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXPLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMT 806
            EIAAFFAQT HETTGGW  AP G YAWGYC++R+                 PG+ Y+GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATDPV+SFKSA+WFWMT
Sbjct:  134 EIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMT 238

HSP 2 Score: 116.701 bits (291), Expect = 1.750e-62
Identity = 50/88 (56.82%), Postives = 64/88 (72.73%), Query Frame = -1

Query:  223 PKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 486
            PKPSCH+VII  W+PSA D  A RLPG+G+ TNIINGG+ECG   +  V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  +M
Sbjct:  242 PKPSCHDVIIGRWQPSAGDRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 329

[Close]

BLAST of CF836549 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.598e-62
Identity = 66/105 (62.86%), Postives = 77/105 (73.33%), Query Frame = -2

Query:  495 EIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXPLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMT 806
            EIAAFFAQT HETTGGW  AP G YAWGYC++R+                 PG+ Y+GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATDPV+SFKSA+WFWMT
Sbjct:  129 EIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMT 233

HSP 2 Score: 114.775 bits (286), Expect = 6.598e-62
Identity = 49/88 (55.68%), Postives = 64/88 (72.73%), Query Frame = -1

Query:  223 PKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 486
            PKPSCH+VII  W+PS+ D  A RLPG+G+ TNIINGG+ECG   +  V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  +M
Sbjct:  237 PKPSCHDVIIGRWQPSSADRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 324

[Close]

BLAST of CF836549 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.463e-61
Identity = 66/105 (62.86%), Postives = 76/105 (72.38%), Query Frame = -2

Query:  495 EIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXPLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMT 806
            EIAAFFAQT HETTGGW  AP G YAWGYC++R+                 PG+ Y+GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATD V+SFKSAIWFWMT
Sbjct:  123 EIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMT 227

HSP 2 Score: 115.931 bits (289), Expect = 1.463e-61
Identity = 48/88 (54.55%), Postives = 64/88 (72.73%), Query Frame = -1

Query:  223 PKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 486
            PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG+  +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  +M
Sbjct:  231 PKPSCHDVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTM 318

[Close]

BLAST of CF836549 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.463e-61
Identity = 65/105 (61.90%), Postives = 76/105 (72.38%), Query Frame = -2

Query:  495 EIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXPLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMT 806
            EIAAFFAQT HETTGGW  AP G YAWGYC++R+                 PG+ Y+GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATD ++SFKSAIWFWMT
Sbjct:  121 EIAAFFAQTSHETTGGWASAPDGPYAWGYCFLREQGSPGDYCTPSNQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSIISFKSAIWFWMT 225

HSP 2 Score: 115.546 bits (288), Expect = 1.463e-61
Identity = 47/88 (53.41%), Postives = 64/88 (72.73%), Query Frame = -1

Query:  223 PKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 486
            PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG+  +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  ++
Sbjct:  229 PKPSCHDVITGRWQPSGTDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 316

[Close]

BLAST of CF836549 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.241e-61
Identity = 67/106 (63.21%), Postives = 78/106 (73.58%), Query Frame = -2

Query:  492 EIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXPLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTA 806
            E+AAFFAQT HETTGGW  AP G YAWGYCY+R+     S           PGQ YYGRGPIQ+++N NY  CG A+G +LLNNPDL+AT+ V+SFKSAIWFWMTA
Sbjct:  139 EVAAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPSYCVQSSQWPCAPGQKYYGRGPIQISYNYNYGPCGRAIGQNLLNNPDLVATNAVVSFKSAIWFWMTA 244

HSP 2 Score: 112.849 bits (281), Expect = 3.241e-61
Identity = 47/88 (53.41%), Postives = 63/88 (71.59%), Query Frame = -1

Query:  223 PKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 486
            PKPSCH+VI   W PSA D  A RLPGYG+ TNIINGG+ECG+  +  V++RIGF+  +C   G+ PGDN+DC NQ+ +   L+ ++M
Sbjct:  247 PKPSCHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECGHGSDARVQDRIGFYRRYCSILGVSPGDNIDCGNQKSFNSGLLLETM 334

[Close]

BLAST of CF836549 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 4.228e-61
Identity = 66/105 (62.86%), Postives = 76/105 (72.38%), Query Frame = -2

Query:  495 EIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXPLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMT 806
            EIAAF AQT HETTGGW  AP G YAWGYC++R+                 PG+ Y+GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATDPV+SFKSAIWFWMT
Sbjct:  127 EIAAFLAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMT 231

HSP 2 Score: 113.62 bits (283), Expect = 4.228e-61
Identity = 47/88 (53.41%), Postives = 63/88 (71.59%), Query Frame = -1

Query:  223 PKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 486
            PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG+  +  V++RIGF+  +CG  G+ PG+NLDC NQR +G  L+   M
Sbjct:  235 PKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGENLDCGNQRSFGNGLLVDIM 322

[Close]

BLAST of CF836549 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 4.240e-61
Identity = 64/105 (60.95%), Postives = 79/105 (75.24%), Query Frame = -2

Query:  495 EIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXPLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMT 806
            E+AAF  QT HETTGGW  AP G YAWGYC++++ +P+S+           PG+ YYGRGP+QL+WN NY  CGEAL V+LL NPDL+ATD VLSFK+A+WFWMT
Sbjct:   56 ELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRYPCAPGKSYYGRGPLQLSWNYNYGPCGEALRVNLLGNPDLVATDRVLSFKTALWFWMT 160

HSP 2 Score: 113.62 bits (283), Expect = 4.240e-61
Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = -1

Query:  247 PKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 486
            PKPSCH+V+   W+PSA D  AGRLPGYG+ TN++NGG+ECG   N  V +R+GFF  +CG  G+  G+NLDC NQRP+G
Sbjct:  164 PKPSCHDVLTGRWQPSAADTAAGRLPGYGVLTNLLNGGLECGKGPNPQVADRLGFFRRYCGLLGVGTGNNLDCYNQRPFG 243

[Close]

BLAST of CF836549 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.222e-60
Identity = 65/105 (61.90%), Postives = 75/105 (71.43%), Query Frame = -2

Query:  495 EIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXPLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMT 806
            EIAAF AQT HETTGGW  AP G YAWGYC++R+                 PG+ Y+GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATD V+SFKSAIWFWMT
Sbjct:  123 EIAAFLAQTSHETTGGWPSAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMT 227

HSP 2 Score: 114.775 bits (286), Expect = 1.222e-60
Identity = 47/88 (53.41%), Postives = 64/88 (72.73%), Query Frame = -1

Query:  223 PKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 486
            PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG+  +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  ++
Sbjct:  231 PKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 318

[Close]

BLAST of CF836549 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.593e-60
Identity = 69/107 (64.49%), Postives = 80/107 (74.77%), Query Frame = -2

Query:  495 EIAAFFAQTGHETTGG--WTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXPLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMT 806
            EIAAF AQT HETTGG  W  AP G YAWGYCY R+++P SS           PG QY+GRGP+QL+WN NY +CG A+GVDLLNNPDLL++DP +SFKSA WFWMT
Sbjct:  128 EIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWMT 233

HSP 2 Score: 110.538 bits (275), Expect = 1.593e-60
Identity = 49/88 (55.68%), Postives = 61/88 (69.32%), Query Frame = -1

Query:  223 PKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 486
            PKPSCH VII  W PS++D  AGR+PGYG+ TNIINGG+ECG   N  V +RIGF+  +C   G+  G+NLDC NQ P+G  +   SM
Sbjct:  237 PKPSCHNVIIGAWSPSSSDRAAGRVPGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFGNGVSVDSM 324

The following BLAST results are available for this feature:

BLAST of CF836549 vs. ExPASy Swiss-Prot

BLAST of CF836549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55


Match Name	E-value	Identity	Description
CHI2_PEA	1.343e-62	62.50	Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=...	[more]
CHI1_TOBAC	1.750e-62	62.86	Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1...	[more]
CHI2_TOBAC	6.598e-62	62.86	Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1...	[more]
CHI1_SOLTU	1.463e-61	62.86	Endochitinase 1 (Fragment) OS=Solanum tuberosum GN...	[more]
CHI2_SOLTU	1.463e-61	61.90	Endochitinase 2 (Fragment) OS=Solanum tuberosum GN...	[more]
CHI3_TOBAC	3.241e-61	63.21	Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3...	[more]
CHIC_SOLLC	4.228e-61	62.86	Basic 30 kDa endochitinase OS=Solanum lycopersicum...	[more]
CHIT_CARPA	4.240e-61	60.95	Endochitinase OS=Carica papaya PE=1 SV=1	[more]
CHI3_SOLTU	1.222e-60	61.90	Endochitinase 3 (Fragment) OS=Solanum tuberosum GN...	[more]
CHI1_GOSHI	1.593e-60	64.49	Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS03_03C09_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03C09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF836549 ID=CF836549; Name=CF836549; organism=Citrus sinensis; type=EST; length=807bp
TTTTTTTTTTTTTTTGCAAATAATTGTCATGTTAAAATAATCAAACCATG
AAAGATGGAGAAGACTCATTGATCCATGTTGGATCAGTCTTATTTAATTT
ACTTACAATAAGAGCGTAACAAACTAACAATTTAGTTGTCCACCTACAAG
TGTGACATCTAAAGTTTTTATTAAGTAGCTTTTATTAAGCTTATTTTACT
AAAACGTTGATCATGATGATCACATAGATTGTGCCATCAGATTAAGGCCA
TAAGGCCGTTGGTTGGAGCAATCAAGATTGTCACCAGGCTGAATCCCAAA
CTTGCCACAGAAAGTGGTAAAGAACCCAATACGGTTACGTACAGCGTCAT
TCCCAACGTAGCCACATTCAATTCCACCGTTGATTATATTTGTGGTTAGA
CCGTATCCCGGAAGCCGGCCGGCGTTTACGTCATTTGCTGATGGTTTCCA
TTCGTCGATAATGACTTCGTGGCACGATGGCTTTGGTGGCTTGCAGTCAT
CCAGAACCAGATTGCTGACTTGAATGATAGTACTGGATCAGTGGCAAGTA
GGTCTGGATTGTTCAACAAGTCCACCCCCAAGGCTTCTCCGCACCTTAAG
TAATTGCAATTCCAAGTGAGTTGAATTGGACCTCGGCCATAGTATTGCCC
TGGCAAGGGACATGGACAGTAAGGATAACAGTAGTCGGACGACGCAGGGC
TAACTTGCCTAATATAGCAATATCCCCAAGCATATTCTCCACCAGGTGCA
TCGGTCCATCCCCCAGTAGTTTCATGGCCAGTTTGGGCAAAAAAGGCAGC
AATTTCT