CF836550

Overview
NameCF836550
Unique NameCF836550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5726 contig Csv1_Contig5726:380..1134. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836550 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 397.127 bits (1019), Expect = 5.291e-110
Identity = 204/243 (83.95%), Postives = 204/243 (83.95%), Query Frame = 3
Query:   27 MTHIKEFFTKLXXXXXXXXXXXXPXXXXXXXXXXXXXXXXXXXXXXXXXXXNSRKNSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMIMRTSNNRKL 755
            MTHIKEFFTKL            P                           NSRKNSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMIMRTSNNRKL
Sbjct:    1 MTHIKEFFTKLSESSSNQNISNIPKKKKKLFLALFATLLVVAAVIGIVAGVNSRKNSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMIMRTSNNRKL 243          
BLAST of CF836550 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 394.045 bits (1011), Expect = 4.479e-109
Identity = 203/243 (83.54%), Postives = 203/243 (83.54%), Query Frame = 3
Query:   27 MTHIKEFFTKLXXXXXXXXXXXXPXXXXXXXXXXXXXXXXXXXXXXXXXXXNSRKNSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMIMRTSNNRKL 755
            MT IKEFFTKL            P                           NSRKNSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMIMRTSNNRKL
Sbjct:    1 MTRIKEFFTKLSESSTNQNISNIPKKKKKLFLALFATLLVVAAVIGIVAGVNSRKNSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMIMRTSNNRKL 243          
BLAST of CF836550 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 3.039e-65
Identity = 130/199 (65.33%), Postives = 155/199 (77.89%), Query Frame = 3
Query:  189 KNSGDNGN-----EPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLK-RTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTD----MMIMRTSNNRKL 755
            KNS D+ +        HAI+KS+CS+T +P+LC+SAI  V + SKKVTSQKDVIE+SLNIT  AV  NY+ +++L+K R  LT REKVALHDCLET+DETLDELH AVEDLE YPNKKSL +H +DLKTL+S+A+TNQ TCLDGFSHD+A+K VR  L  GQ HVEKMCSNALAMI NMTDTD    M +   +NNRKL
Sbjct:   47 KNSDDHADIMAISSSAHAIVKSACSNTLHPELCYSAIVNVSDFSKKVTSQKDVIELSLNITVKAVRRNYYAVKELIKTRKGLTPREKVALHDCLETMDETLDELHTAVEDLELYPNKKSLKEHVEDLKTLISSAITNQETCLDGFSHDEADKKVRKVLLKGQKHVEKMCSNALAMICNMTDTDIANEMKLSAPANNRKL 245          
BLAST of CF836550 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 246.899 bits (629), Expect = 8.843e-65
Identity = 129/197 (65.48%), Postives = 151/197 (76.65%), Query Frame = 3
Query:  183 SRKNSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLK-RTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMIMR-----TSNNRKL 755
            S+ N     +   HA+L+SSCSSTRYP+LC SA+  V     ++TSQKDVIE S+N+T TAVEHNYF ++KL+K R  LT REK ALHDCLETIDETLDELH+ VEDL  YP KK+L +HA DLKTL+S+A+TNQ TCLDGFSHDDA+K VR AL  GQ+HVE MCSNALAMIKNMTDTD+         TSNNRKL
Sbjct:   43 SKANEKRTLSPSSHAVLRSSCSSTRYPELCISAV--VTAGGVELTSQKDVIEASVNLTITAVEHNYFTVKKLIKKRKGLTPREKTALHDCLETIDETLDELHETVEDLHLYPTKKTLREHAGDLKTLISSAITNQETCLDGFSHDDADKQVRKALLKGQIHVEHMCSNALAMIKNMTDTDIANFEQKAKITSNNRKL 237          
BLAST of CF836550 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 244.588 bits (623), Expect = 4.389e-64
Identity = 127/188 (67.55%), Postives = 149/188 (79.26%), Query Frame = 3
Query:  222 HAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLL-KRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDM---------MIMRTSNNRKL 755
            HAILKS CSST YP+LCFSA+AA     K++TSQK+VIE SLN+TT AV+HNYF ++KL+ KR  LT RE  ALHDCLETIDETLDELH AVEDL +YP +KSL +HADDLKTL+S+A+TNQGTCLDGFS+DDA++ VR AL  GQVHVE MCSNALAMIKNMT+TD+              +NNRKL
Sbjct:   59 HAILKSVCSSTLYPELCFSAVAAT--GGKELTSQKEVIEASLNLTTKAVKHNYFAVKKLIAKRKGLTPREVTALHDCLETIDETLDELHVAVEDLHQYPKQKSLRKHADDLKTLISSAITNQGTCLDGFSYDDADRKVRKALLKGQVHVEHMCSNALAMIKNMTETDIANFELRDKSSTFTNNNNRKL 244          
BLAST of CF836550 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.407e-16
Identity = 42/165 (25.45%), Postives = 97/165 (58.79%), Query Frame = 3
Query:  216 PHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKS--LSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKN 704
            P +  +K+SC+ T YP +C  +++A  +  +   + +++   +L ++ T  +     +++L K   L  R+  A+HDCLE ++++LD + ++ ++++   + K    +    +++T +SAA+T++ TC+DGF+    +  +++++    V V ++ SNALA++ N
Sbjct:   24 PANQFIKTSCTLTTYPAVCEQSLSAYAKTIQN--NPQELASTALQVSLTRTQQAQTFMKRLNKFKGLKARQYAAIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGNDFTFRMSNVETWVSAALTDETTCMDGFAGKGMDGKIKESVRAQVVAVARVTSNALALVNN 186          
BLAST of CF836550 vs. ExPASy Swiss-Prot
Match: PME34_ARATH (Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.583e-13
Identity = 53/181 (29.28%), Postives = 91/181 (50.28%), Query Frame = 3
Query:  213 EPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMIMRTSNNRKL 755
            +P  AI K+ C  TR+P+LC  ++   P  S   +S KD+I +++N+T     H  +    L    ++  R + A   C+E +D+++D L +A+  +       S S    D+ T +SAA+TN  TC +GF   D +  V+D ++    ++ ++ SN LA+     D D        NR+L
Sbjct:   82 KPSQAISKA-CELTRFPELCVDSLMDFP-GSLAASSSKDLIHVTVNMTLHHFSHALYSSASL-SFVDMPPRARSAYDSCVELLDDSVDALSRALSSVV------SSSAKPQDVTTWLSAALTNHDTCTEGFDGVD-DGGVKDHMTAALQNLSELVSNCLAIFSASHDGDDFAGVPIQNRRL 252          
BLAST of CF836550 vs. ExPASy Swiss-Prot
Match: PME1_ARATH (Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.855e-13
Identity = 50/166 (30.12%), Postives = 84/166 (50.60%), Query Frame = 3
Query:  231 LKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSL-SQHADDLKTLMSAAMTNQGTCLDGFSH------DDANKHVRDALSDGQVHVEKMCSNALAMIKNM 707
            LK+ CS TR+P+ C S+I+ +P  S   T  + + ++SL +    ++      +KL K T   +R K AL  C + I++ LD L+  V  +++   KK+L S   +DLKT +SA +T+  TC D          + AN  +   L        +  SN+LA++  +
Sbjct:   73 LKAICSVTRFPESCISSISKLP--SSNTTDPETLFKLSLKVIIDELDSISDLPEKLSKETE-DERIKSALRVCGDLIEDALDRLNDTVSAIDDEEKKKTLSSSKIEDLKTWLSATVTDHETCFDSLDELKQNKTEYANSTITQNLKSAMSRSTEFTSNSLAIVSKI 235          
BLAST of CF836550 vs. ExPASy Swiss-Prot
Match: PME26_ARATH (Putative pectinesterase/pectinesterase inhibitor 26 OS=Arabidopsis thaliana GN=PME26 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.340e-12
Identity = 49/161 (30.43%), Postives = 83/161 (51.55%), Query Frame = 3
Query:  225 AILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEY--PNKKSL-SQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMI 698
            ++L++ C+ T YP  C S+I+ +P  SK  T  K +  +SL +T   + ++  G+ K L      +  K AL  C +  D  +D ++  +  L+E     KK+L S    DL T +S+A+T+ GTC D    D+ N  +   L    V+  +  SN+LA++
Sbjct:  457 SVLRTVCNVTNYPASCISSISKLP-LSKTTTDPKVLFRLSLQVTFDEL-NSIVGLPKKLAEETNDEGLKSALSVCADVFDLAVDSVNDTISSLDEVISGGKKNLNSSTIGDLITWLSSAVTDIGTCGDTLDEDNYNSPIPQKLKSAMVNSTEFTSNSLAIV 615          

HSP 2 Score: 73.1738 bits (178), Expect = 1.750e-12
Identity = 56/183 (30.60%), Postives = 87/183 (47.54%), Query Frame = 3
Query:  207 GNEPHH-----------AILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHA-DDLKTLMSAAMTNQGTCLDGFSH-DDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDT 716
            GN PH            A LK+ CS T YP  CFS+I+ +P ++   T  + +  +SL +    +       +KL + T+  +  K AL  C   +D  +D +++ V  +E    KK L+    DDL T +SAA+T  GTCLD        N  +   L  G V+  +  SN+LA++  +  T
Sbjct:   58 GNSPHPTPSSVPELTPAASLKTVCSVTNYPVSCFSSISKLPLSN--TTDPEVIFRLSLQVVIDELNSIVELPKKLAEETD-DEGLKSALSVCEHLLDLAIDRVNETVSAMEVVDGKKILNAATIDDLLTWLSAAVTYHGTCLDALDEISHTNSAIPLKLKSGMVNSTEFTSNSLAIVAKILST 237          

HSP 3 Score: 70.8626 bits (172), Expect = 8.685e-12
Identity = 48/166 (28.92%), Postives = 84/166 (50.60%), Query Frame = 3
Query:  225 AILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSL--SQHADDLKTLMSAAMTNQGTCLDGFSH------DDANKHVRDALSDGQVHVEKMCSNALAMI 698
            A L++ CS TRYP  C S+I+ +P  S   T  + +  +SL +    + ++  G+ K L      +R K +L  C +  ++ +D ++  +  +EE  + K +  S   D+++T +SAA+T+  TCLD          + AN  +   L    V+  K  SN+LA+I
Sbjct:  269 ASLRNVCSVTRYPASCVSSISKLP--SSNTTDPEALFRLSLQVVINEL-NSIAGLPKKLAEETDDERLKSSLSVCGDVFNDAIDIVNDTISTMEEVGDGKKILKSSTIDEIQTWLSAAVTDHDTCLDALDELSQNKTEYANSPISLKLKSAMVNSRKFTSNSLAII 431          
BLAST of CF836550 vs. ExPASy Swiss-Prot
Match: PME40_ARATH (Probable pectinesterase/pectinesterase inhibitor 40 OS=Arabidopsis thaliana GN=PME40 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.899e-12
Identity = 50/162 (30.86%), Postives = 86/162 (53.09%), Query Frame = 3
Query:  267 LCFSAIAAVPEASKKVTSQKDVIEM---SLNITTTAVEHNYFGIQKLLKR--TNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKH----------VRDALSDGQVHVEKMCSNALAMIKNM 707
            L F +       +++ TS  D+ E+   +LN T + V  +      LL+R  +NL+ R+  A  DCLE +D+T+ +L  A+  L      +S S    ++K L+SAAMTN  TCLDGF+  D +++          V ++L +   ++    S++LAM++N+
Sbjct:   16 LLFLSTVFSSHVTQRFTSSDDITELVVTALNQTISNVNLSSSNFSDLLQRLGSNLSHRDLCAFDDCLELLDDTVFDLTTAISKL------RSHSPELHNVKMLLSAAMTNTRTCLDGFASSDNDENLNNNDNKTYGVAESLKESLFNISSHVSDSLAMLENI 171          
The following BLAST results are available for this feature:
BLAST of CF836550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PME1_CITSI5.291e-11083.95Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PME3_CITSI4.479e-10983.54Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PMEU1_SOLLC3.039e-6565.33Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
PME3_ARATH8.843e-6565.48Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PME2_ARATH4.389e-6467.55Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
21KD_DAUCA3.407e-1625.4521 kDa protein OS=Daucus carota PE=2 SV=1[more]
PME34_ARATH1.583e-1329.28Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME1_ARATH7.855e-1330.12Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 P... [more]
PME26_ARATH1.340e-1230.43Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME40_ARATH3.899e-1230.86Probable pectinesterase/pectinesterase inhibitor 4... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03C09_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836550 ID=CF836550; Name=CF836550; organism=Citrus sinensis; type=EST; length=755bp
TTTGTTCTCTCTCATTGAGAAAAAAAATGACCCACATAAAAGAATTCTTC
ACAAAACTTTCTGAATCTTCTAGCAACCAAAACATTTCCAATATTCCCAA
GAAAAAAAAGAAACTATTCTTAGCTCTTTTTGCAACGCTACTCGTTGTTG
CTGCCGTAATCGGCATTGTCGCCGGAGTGAACTCAAGAAAAAACTCCGGC
GACAACGGCAACGAGCCTCATCATGCTATCCTCAAATCATCATGCAGCAG
CACAAGGTACCCGGACTTATGCTTTTCGGCTATTGCTGCCGTTCCAGAGG
CCTCCAAAAAGGTGACAAGCCAAAAGGACGTTATTGAGATGTCCTTAAAT
ATCACAACAACAGCCGTGGAACACAACTACTTCGGGATTCAGAAGCTCTT
GAAGAGAACGAATCTCACCAAACGGGAAAAGGTTGCTCTCCATGACTGTC
TTGAGACGATCGATGAGACTCTTGATGAGTTACACAAAGCCGTCGAGGAT
CTTGAGGAGTACCCGAACAAGAAATCTTTATCACAGCATGCGGATGATCT
CAAAACCTTAATGAGTGCCGCGATGACCAATCAGGGGACGTGTCTTGATG
GGTTCTCGCATGATGATGCTAATAAGCACGTGCGGGATGCGTTGTCAGAC
GGCCAGGTTCATGTTGAGAAGATGTGTAGCAATGCGCTTGCTATGATCAA
GAACATGACGGACACTGACATGATGATCATGAGGACTTCAAACAACAGGA
AGCTG
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