CF836552

Overview
NameCF836552
Unique NameCF836552
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836552_ssr127 microsatellite CF836552_ssr127:127..144. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF836552 vs. ExPASy Swiss-Prot
Match: WRK25_ARATH (Probable WRKY transcription factor 25 OS=Arabidopsis thaliana GN=WRKY25 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.388e-22
Identity = 78/236 (33.05%), Postives = 105/236 (44.49%), Query Frame = 1
Query:   46 MNPTSFTDLLTSSAPADHAQLHXXXXXXXXXXXXRGLSDRIAERTGSGVPKFKSIQXXXXXXXXXXXXXXXXXXXXXAGLSPAELLDSPVLLNTSNVLPSPTTGAF--QSFNWKSNIGSNDQQSVKQENKNQSDFSFPTQTRPNTTSSIAQQNQPWNYQESTKQDVKLAXXXXXXXXXXXXXXXXXXXDFGNYQHQQSQPIRESKKSDDGYNWRKYGQKQVKGSENPRSYYKCTFP 747
            M+ TSFTDLL SS       +                     ERTGSG+PKFK+ Q                        + ++ LDSP+LL++S+ L SPTTG F  Q FN  +N              N SDF +  Q++P+  SS  Q+   +  Q+  K+   +                     FG  +  +      S+ S+DGY WRKYGQKQVK SENPRSY+KCT+P
Sbjct:    1 MSSTSFTDLLGSSG------VDCYEDDEDLRVSGSSFGGYYPERTGSGLPKFKTAQPPPLPISQSSH-----------NFTFSDYLDSPLLLSSSHSLISPTTGTFPLQGFNGTTN--------------NHSDFPWQLQSQPSNASSALQET--YGVQDHEKKQEMIPNEIATQNNNQ---------SFGTERQIKIPAYMVSRNSNDGYGWRKYGQKQVKKSENPRSYFKCTYP 194          
BLAST of CF836552 vs. ExPASy Swiss-Prot
Match: WRK33_ARATH (Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.733e-20
Identity = 65/165 (39.39%), Postives = 82/165 (49.70%), Query Frame = 1
Query:  286 SPAELLDSPVLLNTS-NVLPSPTTGAFQSFNWKSNIGSNDQQSVKQENKNQSDFSF---------PTQTRPNTTSSIAQQNQPWNYQESTKQDVKLAXXXXXXXXXXXXXXXXXXXDFGNYQHQQSQPIRESKKSDDGYNWRKYGQKQVKGSENPRSYYKCTFPS 750
            SP+  LDSP  +++S NVL SPTTGA  + N  +  G N+       N N  DFSF         PT T   TT++    +  +  QE  K++                       +        S   RE +K +DGYNWRKYGQKQVKGSENPRSYYKCTFP+
Sbjct:   65 SPSLFLDSPAFVSSSANVLASPTTGALIT-NVTNQKGINEGDKSNNNNFNLFDFSFHTQSSGVSAPTTTTTTTTTTTTTNSSIFQSQEQQKKNQS---------------EQWSQTETRPNNQAVSYNGREQRKGEDGYNWRKYGQKQVKGSENPRSYYKCTFPN 213          
BLAST of CF836552 vs. ExPASy Swiss-Prot
Match: WRK26_ARATH (Probable WRKY transcription factor 26 OS=Arabidopsis thaliana GN=WRKY26 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.861e-20
Identity = 61/159 (38.36%), Postives = 79/159 (49.69%), Query Frame = 1
Query:  280 GLSPAELLDSPVLLNTSNVLPSPTTGAF--QSFNWKSNIGSNDQQSVKQENKNQSDFSFPTQTRPNTTSSIAQQNQPWNYQESTKQDVKLAXXXXXXXXXXXXXXXXXXXDFGNYQHQQSQPIRESKKSDDGYNWRKYGQKQVKGSENPRSYYKCTFPS 750
            GL+PA+ LDSP+L  +SN+LPSPTTG F  QS N+ +N    D+  +K E+           T P    S+  Q  P                                         +S+ +  +K SDDGYNWRKYGQKQVKGSENPRSY+KCT+P+
Sbjct:   34 GLTPADFLDSPLLFTSSNILPSPTTGTFPAQSLNYNNNGLLIDKNEIKYEDT----------TPPLFLPSMVTQPLP------------------------------------QLDLFKSEIMSSNKTSDDGYNWRKYGQKQVKGSENPRSYFKCTYPN 146          
BLAST of CF836552 vs. ExPASy Swiss-Prot
Match: WRKY4_ARATH (Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.740e-15
Identity = 57/159 (35.85%), Postives = 72/159 (45.28%), Query Frame = 1
Query:  280 GLSPAELLDSPVLLNTSNVLPSPTTGAFQSFNWKSNIGSNDQQSVKQENKNQSDFSFPTQTRPNTTSSIAQQ---NQPWNYQESTKQDVKLAXXXXXXXXXXXXXXXXXXXDFGNYQHQQSQPIRESKKSDDGYNWRKYGQKQVKGSENPRSYYKCTFP 747
            GLSPA LLDSP  L     L SP  G++     +  +     Q+V+     Q    +P  ++  + SS   Q   + P   Q  T                          D    +H+  QP+   K +DDGYNWRKYGQKQVKGSE PRSYYKCT P
Sbjct:  129 GLSPAMLLDSPSFLG----LFSPVQGSY-GMTHQQALAQVTAQAVQANANMQPQTEYPPPSQVQSFSSGQAQIPTSAPLPAQRETS-------------------------DVTIIEHRSQQPLNVDKPADDGYNWRKYGQKQVKGSEFPRSYYKCTNP 257          
BLAST of CF836552 vs. ExPASy Swiss-Prot
Match: WRKY3_ARATH (Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.424e-14
Identity = 53/161 (32.92%), Postives = 76/161 (47.20%), Query Frame = 1
Query:  280 GLSPAELLDSPVLLNTSNVLPSPTTGAFQSFNWKSNIGSNDQ----QSVKQENKNQSDFSFPTQTRPNTTSSIAQQNQPWNYQESTKQDVKLAXXXXXXXXXXXXXXXXXXXDFGNYQHQQSQPIRESKKSDDGYNWRKYGQKQVKGSENPRSYYKCTFPS 750
            GLSPA LLDSP        L SP  G F   + ++      Q     +V  +   QS++   TQ +       +    P ++  + +  ++ +                   +   ++H+ SQP    K +DDGYNWRKYGQKQVKGS+ PRSYYKCT P+
Sbjct:  132 GLSPATLLDSPSFFG----LFSPLQGTFGMTHQQALAQVTAQAVQGNNVHMQQSQQSEYPSSTQQQQQQQQQASLTEIP-SFSSAPRSQIRASVQETSQGQRETS-------EISVFEHR-SQPQNADKPADDGYNWRKYGQKQVKGSDFPRSYYKCTHPA 279          
The following BLAST results are available for this feature:
BLAST of CF836552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
WRK25_ARATH5.388e-2233.05Probable WRKY transcription factor 25 OS=Arabidops... [more]
WRK33_ARATH1.733e-2039.39Probable WRKY transcription factor 33 OS=Arabidops... [more]
WRK26_ARATH3.861e-2038.36Probable WRKY transcription factor 26 OS=Arabidops... [more]
WRKY4_ARATH3.740e-1535.85Probable WRKY transcription factor 4 OS=Arabidopsi... [more]
WRKY3_ARATH2.424e-1432.92Probable WRKY transcription factor 3 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_03C10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836552 ID=CF836552; Name=CF836552; organism=Citrus sinensis; type=EST; length=751bp
TCACCACCCAACACACACTACTTCACTTTCTCAACACATCCCTTCATGAA
CCCCACTTCTTTCACTGATCTTCTTACATCTTCCGCACCGGCCGATCATG
CTCAACTTCATAGCAATAACAGCAACACAACAACAACAACAACAACTCGT
GGGTTGTCGGATCGTATAGCTGAGAGAACCGGGTCCGGTGTGCCGAAATT
CAAGTCTATCCAGCCTCCTTCATTGCCCATCTCCCCTCCTTCACTTTTCT
CTCCTTCTTCTTACTTCTCTATTCCTGCTGGCCTCAGCCCTGCTGAGCTC
TTGGACTCCCCTGTTTTGCTTAACACTTCCAACGTTCTGCCATCTCCAAC
AACTGGAGCATTTCAATCTTTCAACTGGAAGAGCAATATTGGCAGTAACG
ACCAGCAAAGTGTTAAACAGGAAAACAAAAATCAATCTGATTTCTCATTT
CCAACACAAACAAGGCCCAACACAACATCATCAATTGCACAGCAAAACCA
ACCATGGAATTATCAGGAATCCACAAAGCAAGATGTGAAATTGGCACAGA
GTTTTTCAACAACTTTGCAAAGTAACAATCAGAGCAACAGTGGGTTCCAA
TCAGATTTTGGAAACTACCAACACCAACAATCTCAGCCCATTAGAGAGAG
TAAAAAATCTGATGATGGATATAATTGGAGAAAATATGGGCAAAAACAAG
TCAAAGGAAGTGAAAATCCAAGAAGTTATTACAAGTGCACATTCCCAAGT
T
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