CF836555

Overview
NameCF836555
Unique NameCF836555
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836555_ssr18 microsatellite CF836555_ssr18:18..29. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9487 contig Csv1_Contig9487:796..1613. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836555 vs. ExPASy Swiss-Prot
Match: DFRA_MAIZE (Dihydroflavonol-4-reductase OS=Zea mays GN=A1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.478e-15
Identity = 65/204 (31.86%), Postives = 101/204 (49.51%), Query Frame = -2
Query:  209 NVLEACAQTNTVDKVVFTSSLTAVVWNNHRDNPTSHDFDERNWSDVNLCKKFKL--W-HGLSKTLAEKTAWALAMDRGISMVSINGGLVMGPDVTISNP--------YLKGAAEMYEDGVMASVDLRF---YVDAHICVFEDVSSYGRYLCFNHVINCNEDAMKLARMXXXXXXXXXXXXSFEDTRVHPQRVSNKKLNKLMVNF 778
            +++ AC +  TV ++VFTSS    V    R  P    +DE +W+DV+ C++ K+  W + +SKTLAEK A A A + G+ +V+I   LV+GP ++ S P         + G A  Y   ++  V L       DA I +FE+ ++ GRY+C +H +  +  A  L                 +D  + P R S+KKL  L   F
Sbjct:  114 SIMRACKEAGTVRRIVFTSS-AGTVNLEERQRPV---YDEESWTDVDFCRRVKMTGWMYFVSKTLAEKAALAYAAEHGLDLVTIIPTLVVGPFISASMPPSLITALALITGNAPHY--SILKQVQLIHLDDLCDAEIFLFENPAAAGRYVCSSHDVTIHGLAAMLRDRYPEYDVPQRFPGIQDD--LQPVRFSSKKLQDLGFTF 309          
BLAST of CF836555 vs. ExPASy Swiss-Prot
Match: DFRA_MALDO (Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Malus domestica GN=DFR PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.520e-15
Identity = 65/210 (30.95%), Postives = 102/210 (48.57%), Query Frame = -2
Query:  191 NVLEACAQTNTVDKVVFTSSLTAVVWNNHRDNPTSHDFDERNWSDVNLCKKFKL--W-HGLSKTLAEKTAWALAMDRGISMVSINGGLVMGPDVTISNP--YLKGAAEMYED----GVMAS---VDLRFYVDAHICVFEDVSSYGRYLCFNHVINCNEDAMKLARMXXXXXXXXXXXXSFE--DTRVHPQRVSNKKLNKLMVNFDGEFQD 778
            ++L+AC +  TV K+VFTSS   V    H+  P    +DE NWSDV  C+  K+  W + +SKTLAE+ AW  A +  I  ++I   LV+GP +  S P   + G + +  +    G++     V L     +HI ++E   + GRY+C +H    +E    L +M             F+  D  + P   S+KKL ++   F    +D
Sbjct:  109 DILKACQKAKTVRKLVFTSSAGTVNVEEHQ-KPV---YDESNWSDVEFCRSVKMTGWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVIGPFLMPSMPPSLITGLSPILRNESHYGIIKQGQYVHLDDLCLSHIYLYEHPKAEGRYICSSHDATIHE----LVKMLREKYPEYNIPTKFKGIDDNLEPVHFSSKKLREIGFEFKYSLED 310          
BLAST of CF836555 vs. ExPASy Swiss-Prot
Match: DFRA_PYRCO (Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Pyrus communis GN=DFR PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.333e-15
Identity = 64/210 (30.48%), Postives = 102/210 (48.57%), Query Frame = -2
Query:  191 NVLEACAQTNTVDKVVFTSSLTAVVWNNHRDNPTSHDFDERNWSDVNLCKKFKL--W-HGLSKTLAEKTAWALAMDRGISMVSINGGLVMGPDVTISNP--YLKGAAEMYED----GVMAS---VDLRFYVDAHICVFEDVSSYGRYLCFNHVINCNEDAMKLARMXXXXXXXXXXXXSFE--DTRVHPQRVSNKKLNKLMVNFDGEFQD 778
            ++L+AC +  TV K+VFTSS   V    H+  P    +DE NWSDV  C+  K+  W + +SKTLAE+ AW  A +  I  ++I   LV+GP +  S P   + G + +  +    G++     V L     +HI +++   + GRY+C +H    +E    L +M             F+  D  + P   S+KKL ++   F    +D
Sbjct:  109 DILKACQKAKTVRKLVFTSSAGTVNVEEHQ-KPV---YDESNWSDVEFCRSVKMTGWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVIGPFLMPSMPPSLITGLSPILRNESHYGIIKQGQYVHLDDLCLSHIYLYKHPKAEGRYICSSHDATIHE----LVKMLREKYPEYNIPTKFKGIDDNLEPVHFSSKKLREIGFEFKYSLED 310          
BLAST of CF836555 vs. ExPASy Swiss-Prot
Match: DFRA_ARATH (Dihydroflavonol-4-reductase OS=Arabidopsis thaliana GN=DFRA PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 7.333e-15
Identity = 61/203 (30.05%), Postives = 97/203 (47.78%), Query Frame = -2
Query:  209 VLEACAQTNTVDKVVFTSSLTAVVWNNHRDNPTSHDFDERNWSDVN--LCKKFKLW-HGLSKTLAEKTAWALAMDRGISMVSINGGLVMGPDVTIS---------NPYLKGAAEMYEDGVMASVDLRFYVDAHICVFEDVSSYGRYLCFNHVINCNEDAMKLARMXXXXXXXXXXXXSFE--DTRVHPQRVSNKKLNKLMVNF 775
            +++AC +  TV + VFTSS   V    H+ N     +DE +WSD+   + KK   W + +SKTLAEK AW  A ++G+  +SI   LV+GP +T S         +P  +  A          V L    +AHI ++E  ++ GRY+C +H    +   + +++             +FE  D  +     S+KKL  +  NF
Sbjct:  110 IMKACVKAKTVRRFVFTSSAGTVNVEEHQKNV----YDENDWSDLEFIMSKKMTGWMYFVSKTLAEKAAWDFAEEKGLDFISIIPTLVVGPFITTSMPPSLITALSPITRNEAHYSIIRQGQYVHLDDLCNAHIFLYEQAAAKGRYICSSH----DATILTISKFLRPKYPEYNVPSTFEGVDENLKSIEFSSKKLTDMGFNF 304          
BLAST of CF836555 vs. ExPASy Swiss-Prot
Match: DFRA_VITVI (Dihydroflavonol-4-reductase OS=Vitis vinifera GN=DFR PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.997e-12
Identity = 65/209 (31.10%), Postives = 95/209 (45.45%), Query Frame = -2
Query:  191 VLEACAQTNTVDKVVFTSSLTAVVWNNHRDNPTSHDFDERNWSDVNLC--KKFKLW-HGLSKTLAEKTAWALAMDRGISMVSINGGLVMGPDVTISNPYLKGAAEMYEDGVMAS---------VDLRFYVDAHICVFEDVSSYGRYLCFNHVINCNEDAMKLARMXXXXXXXXXXXXSFE--DTRVHPQRVSNKKLNKLMVNFDGEFQD 775
            ++++CA   TV ++VFTSS   V    H+       +DE  WSD+  C  KK   W + +SKTLAE+ AW  A +  I  ++I   LV+GP +  S P     A     G  A          V L    +AHI +FE+  + GRY+C +H  +C    + LA+M             F+  D  +     S+KKL  L   F    +D
Sbjct:  110 IMKSCAAAKTVRRLVFTSSAGTVNIQEHQ----LPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIYLFENPKAEGRYICSSH--DC--IILDLAKMLREKYPEYNIPTEFKGVDENLKSVCFSSKKLTDLGFEFKYSLED 310          
BLAST of CF836555 vs. ExPASy Swiss-Prot
Match: DFRA_GERHY (Dihydroflavonol-4-reductase OS=Gerbera hybrida GN=DFR PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.997e-12
Identity = 51/152 (33.55%), Postives = 75/152 (49.34%), Query Frame = -2
Query:  359 NVLEACAQTNTVDKVVFTSSLTAVVWNNHRDNPTSHDFDERNWSDVNLC--KKFKLW-HGLSKTLAEKTAWALAMDRGISMVSINGGLVMGPDVTISNPYLKGAAEMYEDGVMAS---------VDLRFYVDAHICVFEDVSSYGRYLCFNH 778
            +++ +C +  TV K+VFTSS   V    +      H +DE +WSD++    KK   W + +SKTLAEK AW       IS +SI   LV+GP +T + P     A     G  A          V L    + HI ++E+  + GRY+C +H
Sbjct:  110 SIIRSCVKAKTVKKLVFTSSAGTV----NGQEKQLHVYDESHWSDLDFIYSKKMTAWMYFVSKTLAEKAAWDATKGNNISFISIIPTLVVGPFITSTFPPSLVTALSLITGNEAHYSIIKQGQYVHLDDLCECHIYLYENPKAKGRYICSSH 257          
BLAST of CF836555 vs. ExPASy Swiss-Prot
Match: DFRA_HORVU (Dihydroflavonol-4-reductase OS=Hordeum vulgare GN=ANT18 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.406e-12
Identity = 61/197 (30.96%), Postives = 91/197 (46.19%), Query Frame = -2
Query:  230 NVLEACAQTNTVDKVVFTSSLTAVVWNNHRDNPTSHDFDERNWSDVNLCKKFKL--W-HGLSKTLAEKTAWALAMDRGISMVSINGGLVMGPDVTISNPYLKGAAEMYEDGVMAS---------VDLRFYVDAHICVFEDVSSYGRYLCFNHVINCNEDAMKLARMXXXXXXXXXXXXSFE--DTRVHPQRVSNKKL 778
            +++ AC +  TV ++VFTSS  +V   N  + P    +D+ NWSD++ C++ K+  W + +SK LAEK A   A + G+  +SI   LV+GP ++   P     A     G  A          V L    DA   +FE   + GRY+C +H    +     LARM             F   D  + P   S+KKL
Sbjct:  109 SIMRACKEAGTVKRIVFTSSAGSV---NIEERPRPA-YDQDNWSDIDYCRRVKMTGWMYFVSKALAEKAAMEYASENGLDFISIIPTLVVGPFLSAGMPPSLVTALALITGNEAHYSILKQVQLVHLDDLCDAMTFLFEHPEANGRYICSSH----DATIHGLARMLQDRFPEYDIPQKFAGVDDNLQPIHFSSKKL 297          
BLAST of CF836555 vs. ExPASy Swiss-Prot
Match: BAN_ARATH (Leucoanthocyanidin reductase OS=Arabidopsis thaliana GN=BAN PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.691e-11
Identity = 48/156 (30.77%), Postives = 79/156 (50.64%), Query Frame = -2
Query:  368 NVLEACAQTNTVDKVVFTSSLTAVVWNNHRDNPTSHDFDERNWSDVNLC---KKFKLWHGLSKTLAEKTAWALAMDRGISMVSINGGLVMGPDVTISNP---------------YLKGAAEMYE-DGVMASVDLRFYVDAHICVFEDVSSYGRYLC 778
            NVL++C ++ +V +V++TSS  AV  NN   + T    +E NW+DV      K F   + +SK LAEKTAW  A +  I++V++   L+ G  +    P               ++ G  EM +  G ++ V +     AH+ + E  ++ GRY+C
Sbjct:  113 NVLKSCLKSKSVKRVIYTSSAAAVSINNL--SGTGIVMNEENWTDVEFLTEEKPFNWGYPISKVLAEKTAWEFAKENKINLVTVIPALIAGNSLLSDPPSSLSLSMSFITGKEMHVTGLKEMQKLSGSISFVHVDDLARAHLFLAEKETASGRYIC 266          
The following BLAST results are available for this feature:
BLAST of CF836555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
DFRA_MAIZE1.478e-1531.86Dihydroflavonol-4-reductase OS=Zea mays GN=A1 PE=3... [more]
DFRA_MALDO2.520e-1530.95Bifunctional dihydroflavonol 4-reductase/flavanone... [more]
DFRA_PYRCO7.333e-1530.48Bifunctional dihydroflavonol 4-reductase/flavanone... [more]
DFRA_ARATH7.333e-1530.05Dihydroflavonol-4-reductase OS=Arabidopsis thalian... [more]
DFRA_VITVI1.997e-1231.10Dihydroflavonol-4-reductase OS=Vitis vinifera GN=D... [more]
DFRA_GERHY1.997e-1233.55Dihydroflavonol-4-reductase OS=Gerbera hybrida GN=... [more]
DFRA_HORVU3.406e-1230.96Dihydroflavonol-4-reductase OS=Hordeum vulgare GN=... [more]
BAN_ARATH1.691e-1130.77Leucoanthocyanidin reductase OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_03C12_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836555 ID=CF836555; Name=CF836555; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTATTGAATTTATTTATTTCGAAAGATCAAAGAAGCTTTT
ACCTTAATATAAGAGCTTGTGCTTTTAACATTTGAACCCTTAAGAGCTTA
ATTTGTGTAAAAACATACACAAGAAAAGAACTTAAATATTTAAACAAAAT
TATAAATTACATAATTGCCATATTAGTCCGCGGAGCAATCATCTTGAAAC
TCGCCATCAAAATTTACCATCAGTTTGTTCAGCTTCTTGTTGCTTACTCT
CTGTGGGTGCACTCTTGTATCCTCAAAACTTAGCGGAGGAGTTGAAGTGT
CGGAGGGTGGCAATAGCATGCGGGCGAGCTTCATGGCGTCTTCGTTGCAG
TTGATGACGTGGTTGAAGCAGAGATAACGACCGTACGATGAAACGTCTTC
GAACACGCAAATGTGAGCATCAACGTAGAATCTCAGGTCCACCGAAGCCA
TCACACCATCTTCGTACATCTCGGCCGCTCCTTTTAGATACGGATTCGAG
ATCGTGACGTCTGGACCCATCACCAGCCCTCCGTTTATCGACACCATGCT
TATTCCCCGGTCCATCGCTAGGGCCCACGCTGTCTTCTCCGCCAGCGTCT
TTGACAAACCGTGCCATAACTTGAATTTCTTGCACAAATTGACGTCACTC
CAATTTCGCTCATCGAAGTCATGCGACGTCGGATTGTCGCGGTGGTTATT
CCAGACGACGGCGGTTAGAGAAGACGTGAAGACGACTTTGTCAACTGTAT
TTGTCTGTGCGCACGCTTCCAGCACGTTGTGAGCTGCCATTGTCTCTACT
TCCGCCGTTAATTCATCG
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