CF836556

Overview
NameCF836556
Unique NameCF836556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2864 contig Csv1_Contig2864:115..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF836556 vs. ExPASy Swiss-Prot
Match: ZFP1_WHEAT (Zinc finger protein 1 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.175e-24
Identity = 81/217 (37.33%), Postives = 93/217 (42.86%), Query Frame = 1 
Query:   82 EANLHCLEPWTKRKRSKRPHNPPTEEEYLALCLVMLARGXXXXXXXXXXXXXXXXXQRQKXXXXXXXXXXXXXDQKLVFKCSVCDKAFSSYQALGGHKASHR--KGSGGGDEHXXXXXXXXXXXXXXXGV-----------PNATGRTHECSICHKSFPTGQALGGHKRCHYDGG-----------EKXXXXXXXXXXXXXXXXXRDFDLNLPVLPE 660
            E + H L+ W KRKRS+R  +   EEE LALCL+ML+RG                 QR +             +    FKCSVC K+FSSYQALGGHK SHR  + S   D                                AT R H CSIC K FPTGQALGGHKR HYDGG                              R FDLN+P +PE
Sbjct:   34 EESGHVLQGWAKRKRSRRQRS---EEENLALCLLMLSRGGK---------------QRVQAPQPESFAAPVPAE----FKCSVCGKSFSSYQALGGHKTSHRVKQPSPPSDAAAAPLVALPAVAAILPSAEPATSSTAASSDGATNRVHRCSICQKEFPTGQALGGHKRKHYDGGVGAAASSTELLAAAAAESEVGSTGNGSSAARAFDLNIPAVPE 228
The following BLAST results are available for this feature:
BLAST of CF836556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ZFP1_WHEAT2.175e-2437.33Zinc finger protein 1 OS=Triticum aestivum PE=2 SV... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_03C12_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836556 ID=CF836556; Name=CF836556; organism=Citrus sinensis; type=EST; length=683bp
TTTAGATTCAAACCATTAACGGAGATGGCACTGGAAGCTCTCAACTCTCC
AACTACTTCGACGCCGCCGTTTCACTTCGAAGAAGCTAATCTTCACTGCC
TTGAGCCATGGACCAAACGCAAGCGCTCAAAGCGTCCACACAATCCTCCA
ACTGAAGAAGAGTATCTCGCGCTCTGCCTCGTCATGCTTGCACGTGGCAC
AACCTCCACCGCCGCCTTAACTAACTGCAACACGACCACCACCGCCTCAC
AGCGACAGAAGTCTCCTGCTCCATCTACTGCTGCAACGACGTCGTCCTCT
GACCAGAAGCTTGTCTTCAAGTGCAGCGTGTGCGACAAGGCGTTTTCTTC
TTACCAAGCCTTGGGTGGTCACAAGGCCAGCCACCGTAAGGGATCTGGGG
GCGGCGACGAACACTCCGCTTCCACTACCACCAACACCAACGCAACCGCC
ACGACCACCGGCGTACCGAACGCCACTGGTAGGACCCACGAGTGTTCCAT
CTGTCACAAGTCCTTCCCCACCGGCCAAGCCTTGGGCGGACACAAACGTT
GTCACTACGATGGCGGCGAGAAGAGCGGAGTGACGTCATCCGGGTCCAGT
AGCACTCACAGCCAAGTCAGCCACCGTGACTTTGACCTCAACCTCCCTGT
CTTACCGGAGCTCTCCCCTGCTTTCTTCTTCTC
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