CF836588

Overview
NameCF836588
Unique NameCF836588
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836588 vs. ExPASy Swiss-Prot
Match: U131_ARATH (UPF0131 protein At3g02910 OS=Arabidopsis thaliana GN=At3g02910 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.566e-50
Identity = 102/173 (58.96%), Postives = 121/173 (69.94%), Query Frame = 2
Query:  122 LIFTYGTLKRGFSNHNLIQDLVLTGDAVFRGAYTTSESFPLVCGPYRVPFLLNIPGSGHPVTGELYAVSAYGLSRMDELEGTSRGHYQRLGPIRV--TRXXXXXXXXXXXXXXXXXXXXXYFADRSYEMELWKKSGKLGFRWYGEKEAKGYVKRKDRPQNLSFLEHIRIFLSS 634
            L+FTYGTLKRGFSNH L+QDL+ +GDA F+G Y T + +PLVCGPYRVPFLLN PGSG+ V GELYAVS  GLSR+DELEG SRGHY R  PIR+                         Y+A +SYE ELW+++    F  Y E EA+GYVKR DRPQ+LSFL+HIRIF+SS
Sbjct:    8 LVFTYGTLKRGFSNHVLMQDLIRSGDASFKGVYQTLDKYPLVCGPYRVPFLLNKPGSGYHVNGELYAVSPRGLSRLDELEGISRGHYIR-QPIRLAAAEEEEEEEGDLETEAPSSCVVEAYYAHKSYEEELWRRNRGRSFGAYTENEARGYVKRNDRPQHLSFLDHIRIFVSS 179          
BLAST of CF836588 vs. ExPASy Swiss-Prot
Match: A2LD1_RAT (AIG2-like domain-containing protein 1 OS=Rattus norvegicus GN=A2ld1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.336e-13
Identity = 45/91 (49.45%), Postives = 55/91 (60.44%), Query Frame = 2
Query:  119 ALIFTYGTLKRGFSNHNLIQDLVLTGDAVFRGAYTTSESFPLV-CGPYRVPFLLNIPGSGHPVTGELYAVSAYGLSRMDELEGTSRGHYQR 388
            A IF YGTLKRG  NH ++ D    G A FRG   T ESFPLV  G + +P+LL++PG GH V GE+Y V    L  +D+ EG     YQR
Sbjct:    2 AHIFVYGTLKRGQPNHKVMLDQS-HGLATFRGRGCTVESFPLVIAGEHNIPWLLHLPGKGHCVAGEIYEVDEQMLRFLDDFEGCP-SMYQR 90          
BLAST of CF836588 vs. ExPASy Swiss-Prot
Match: A2LD1_MOUSE (AIG2-like domain-containing protein 1 OS=Mus musculus GN=a2ld1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 42/82 (51.22%), Postives = 51/82 (62.20%), Query Frame = 2
Query:  119 ALIFTYGTLKRGFSNHNLIQDLVLTGDAVFRGAYTTSESFPLV-CGPYRVPFLLNIPGSGHPVTGELYAVSAYGLSRMDELE 361
            A IF YGTLKRG  NH ++ D    G A FRG   T ESFPLV  G + +P+LL +PG GH VTGE+Y V    L  +D+ E
Sbjct:    2 AHIFVYGTLKRGQPNHKVMLDHS-HGLAAFRGRGCTVESFPLVIAGEHNIPWLLYLPGKGHCVTGEIYEVDEQMLRFLDDFE 82          
BLAST of CF836588 vs. ExPASy Swiss-Prot
Match: A2LD1_HUMAN (AIG2-like domain-containing protein 1 OS=Homo sapiens GN=A2LD1 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 2
Query:  119 ALIFTYGTLKRGFSNHNLIQDLVLTGDAVFRGAYTTSESFPLV-CGPYRVPFLLNIPGSGHPVTGELYAVSAYGLSRMDELE 361
            AL+F YGTLKRG  NH +++D    G A FR    T E +PLV  G + +P+LL++PGSG  V GE+YAV    L  +D+ E
Sbjct:    2 ALVFVYGTLKRGQPNHRVLRDGA-HGSAAFRARGRTLEPYPLVIAGEHNIPWLLHLPGSGRLVEGEVYAVDERMLRFLDDFE 82          
BLAST of CF836588 vs. ExPASy Swiss-Prot
Match: A2LD1_BOVIN (AIG2-like domain-containing protein 1 OS=Bos taurus GN=A2LD1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.923e-11
Identity = 39/82 (47.56%), Postives = 48/82 (58.54%), Query Frame = 2
Query:  119 ALIFTYGTLKRGFSNHNLIQDLVLTGDAVFRGAYTTSESFPLV-CGPYRVPFLLNIPGSGHPVTGELYAVSAYGLSRMDELE 361
            A +F YGTLK G  NH ++ D    G A FRG   T E +PLV  G + +P LLN+PG GH V GE+Y V    L  +DE E
Sbjct:   27 APVFVYGTLKTGQPNHRVLLDGA-HGRAAFRGRAHTLEPYPLVIAGEHNIPRLLNLPGRGHRVFGEVYEVDERMLRFLDEFE 107          
The following BLAST results are available for this feature:
BLAST of CF836588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
U131_ARATH7.566e-5058.96UPF0131 protein At3g02910 OS=Arabidopsis thaliana ... [more]
A2LD1_RAT4.336e-1349.45AIG2-like domain-containing protein 1 OS=Rattus no... [more]
A2LD1_MOUSE2.152e-1251.22AIG2-like domain-containing protein 1 OS=Mus muscu... [more]
A2LD1_HUMAN4.794e-1247.56AIG2-like domain-containing protein 1 OS=Homo sapi... [more]
A2LD1_BOVIN6.923e-1147.56AIG2-like domain-containing protein 1 OS=Bos tauru... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_03D15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03D15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836588 ID=CF836588; Name=CF836588; organism=Citrus sinensis; type=EST; length=731bp
ACGATATATTATATTGTATCATTCATTCATTCGGCGTCAGTCGAATACAA
TTCAGTTTTGTCGAACAAAAATGGGAATGGAAGTGGCAGCGGAAGAAGAG
CCGAAGAAGAAGTGTAGGGCTCTGATATTCACGTACGGGACGCTGAAGCG
GGGTTTCTCGAACCACAACCTGATCCAAGATCTAGTGCTCACCGGAGACG
CCGTTTTCAGAGGCGCCTACACCACCTCCGAGAGCTTCCCTCTCGTCTGC
GGGCCCTACCGGGTCCCTTTCCTCCTCAACATCCCCGGCTCCGGCCACCC
CGTCACCGGCGAGCTCTACGCCGTCTCCGCCTACGGCCTATCCAGGATGG
ACGAGCTCGAAGGCACCTCCCGCGGCCACTACCAAAGGCTCGGCCCCATC
AGAGTAACCAGGGCGGCGGTGGCGGCGGAGGCCGACGATGACTCCGACGA
TGAAGCTGAGGCTGAGGCTGAGGCTTATTTTGCGGACAGGAGCTACGAAA
TGGAGCTGTGGAAGAAGAGCGGAAAGTTAGGGTTTCGTTGGTATGGCGAA
AAAGAAGCCAAAGGCTACGTTAAGAGGAAAGATCGCCCCCAGAATCTCTC
TTTCCTGGAACATATTCGCATCTTTCTTTCATCATCCTCTACCGATCAAT
GATTCTTATTATATTTATTATCCGTCATGTTATAATTTTAATCCTTATTA
GTTAGTGCTCTGGGGGTCTATACTTTTTTTT
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