CF836589

Overview
NameCF836589
Unique NameCF836589
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length747
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836589_ssr645 microsatellite CF836589_ssr645:645..656. BLAST: Citrus ESTs to Prunus persica proteins V1
CF836589_ssr704 microsatellite CF836589_ssr704:704..715. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2239 contig Csv1_Contig2239:57..803. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF836589 vs. ExPASy Swiss-Prot
Match: H2AV3_ORYSJ (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica GN=Os03g0743400 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.177e-43
Identity = 98/131 (74.81%), Postives = 102/131 (77.86%), Query Frame = -2 
Query:  210 KGLITGKTTIXXXXXXXXXK--PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE*LDTLIKGTIAGGGVIPHIHKSLINKSSKE 596
            KGL+  KTT          K  PVSRSSRAGLQFPVGR+HR LK+             VY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE LDTLIKGTIAGGGVIPHIHKSLINKSSKE
Sbjct:    7 KGLLAAKTTAAKSAEKDKGKKAPVSRSSRAGLQFPVGRIHRQLKQRTQANGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 137
[Close]
BLAST of CF836589 vs. ExPASy Swiss-Prot
Match: H2AV3_ARATH (Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.177e-43
Identity = 98/130 (75.38%), Postives = 103/130 (79.23%), Query Frame = -2 
Query:  210 AKGLITGKTTIXXXXXXXXXKPVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE*LDTLIKGTIAGGGVIPHIHKSLINKSSKE 599
            AKGLI GK +          KP++RSSRAGLQFPVGRVHRLLK              VYTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDE LDTLIKGTIAGGGVIPHIHKSLINKS+KE
Sbjct:    6 AKGLIMGKPS-GSDKDKDKKKPITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSAKE 134
[Close]
BLAST of CF836589 vs. ExPASy Swiss-Prot
Match: H2AV1_ORYSJ (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica GN=Os03g0162200 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.073e-42
Identity = 97/132 (73.48%), Postives = 101/132 (76.52%), Query Frame = -2 
Query:  210 KGLITGKTTIXXXXXXXXXK---PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE*LDTLIKGTIAGGGVIPHIHKSLINKSSKE 596
            KGL+  KTT          K   PVSRSSRAGLQFPVGR+HR LK              VY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE LDTLIKGTIAGGGVIPHIHKSLINK+SKE
Sbjct:    7 KGLLAAKTTAAKSADKDKDKKKAPVSRSSRAGLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 138
[Close]
BLAST of CF836589 vs. ExPASy Swiss-Prot
Match: H2AV2_ORYSJ (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica GN=Os10g0418000 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.032e-42
Identity = 95/133 (71.43%), Postives = 100/133 (75.19%), Query Frame = -2 
Query:  210 KGLITGKTTIXXXXXXXXXK----PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE*LDTLIKGTIAGGGVIPHIHKSLINKSSKE 596
            KGL+  KTT               PVSRSSRAG+QFPVGR+HR LK              VYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE LDTLIKGTIAGGGVIPHIHKSLINK++KE
Sbjct:    7 KGLLAAKTTAAKAAADKDKDRKKAPVSRSSRAGIQFPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTAKE 139
[Close]
BLAST of CF836589 vs. ExPASy Swiss-Prot
Match: H2AV1_ARATH (Histone H2A variant 1 OS=Arabidopsis thaliana GN=H2AV PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.910e-41
Identity = 92/130 (70.77%), Postives = 100/130 (76.92%), Query Frame = -2 
Query:  210 KGLITGKT-TIXXXXXXXXXKPVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE*LDTLIKGTIAGGGVIPHIHKSLINKSSKE 596
            KGL+  KT            KP+SRS+RAG+QFPVGR+HR LK              VYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE LDTLIKGTIAGGGVIPHIHKSLINK++KE
Sbjct:    7 KGLVAAKTMAANKDKDKDKKKPISRSARAGIQFPVGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKE 136
[Close]
BLAST of CF836589 vs. ExPASy Swiss-Prot
Match: H2AV2_ARATH (Probable histone H2A variant 2 OS=Arabidopsis thaliana GN=At2g38810 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.486e-40
Identity = 91/130 (70.00%), Postives = 100/130 (76.92%), Query Frame = -2 
Query:  210 KGLITGKTTIXXXXXXXXXKP-VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE*LDTLIKGTIAGGGVIPHIHKSLINKSSKE 596
            KGL+  KTT          K  +SRSSRAG+QFPVGR+HR LK+             VYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE LDTLIKGTIAGGGVIPHIHKSL+NK +K+
Sbjct:    7 KGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNKVTKD 136
[Close]
BLAST of CF836589 vs. ExPASy Swiss-Prot
Match: H2AZL_XENTR (Histone H2A.Z-like OS=Xenopus tropicalis GN=h2a.zl PE=2 SV=3)

HSP 1 Score: 156.762 bits (395), Expect = 1.177e-37
Identity = 82/108 (75.93%), Postives = 88/108 (81.48%), Query Frame = -2 
Query:  210 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE*LDTLIKGTIAGGGVIPHIHKSLINKSSKE 533
            ++RSSRAGLQFPVGR+HRLLK              VYTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDE LD LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 ITRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of CF836589 vs. ExPASy Swiss-Prot
Match: H2AZL_XENLA (Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE=2 SV=3)

HSP 1 Score: 156.762 bits (395), Expect = 1.177e-37
Identity = 82/108 (75.93%), Postives = 88/108 (81.48%), Query Frame = -2 
Query:  210 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE*LDTLIKGTIAGGGVIPHIHKSLINKSSKE 533
            ++RSSRAGLQFPVGR+HRLLK              VYTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDE LD LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 ITRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of CF836589 vs. ExPASy Swiss-Prot
Match: H2AZ_SHEEP (Histone H2A.Z OS=Ovis aries GN=H2AFZ PE=2 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 5.842e-37
Identity = 82/108 (75.93%), Postives = 87/108 (80.56%), Query Frame = -2 
Query:  210 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE*LDTLIKGTIAGGGVIPHIHKSLINKSSKE 533
            VSRS RAGLQFPVGR+HR LK              VY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE LD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of CF836589 vs. ExPASy Swiss-Prot
Match: H2AZ_RAT (Histone H2A.Z OS=Rattus norvegicus GN=H2afz PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 5.842e-37
Identity = 82/108 (75.93%), Postives = 87/108 (80.56%), Query Frame = -2 
Query:  210 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE*LDTLIKGTIAGGGVIPHIHKSLINKSSKE 533
            VSRS RAGLQFPVGR+HR LK              VY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE LD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
The following BLAST results are available for this feature:
BLAST of CF836589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2AV3_ORYSJ4.177e-4374.81Probable histone H2A variant 3 OS=Oryza sativa sub... [more]
H2AV3_ARATH4.177e-4375.38Probable histone H2A variant 3 OS=Arabidopsis thal... [more]
H2AV1_ORYSJ2.073e-4273.48Probable histone H2A variant 1 OS=Oryza sativa sub... [more]
H2AV2_ORYSJ6.032e-4271.43Probable histone H2A variant 2 OS=Oryza sativa sub... [more]
H2AV1_ARATH3.910e-4170.77Histone H2A variant 1 OS=Arabidopsis thaliana GN=H... [more]
H2AV2_ARATH1.486e-4070.00Probable histone H2A variant 2 OS=Arabidopsis thal... [more]
H2AZL_XENTR1.177e-3775.93Histone H2A.Z-like OS=Xenopus tropicalis GN=h2a.zl... [more]
H2AZL_XENLA1.177e-3775.93Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE... [more]
H2AZ_SHEEP5.842e-3775.93Histone H2A.Z OS=Ovis aries GN=H2AFZ PE=2 SV=3[more]
H2AZ_RAT5.842e-3775.93Histone H2A.Z OS=Rattus norvegicus GN=H2afz PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03D16_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03D16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836589 ID=CF836589; Name=CF836589; organism=Citrus sinensis; type=EST; length=747bp
ATATGAATTATTTAAAATTAAACAGTAACAGTTCAATACCAACATGGGAA
AAAACAAGCACCATAATTCGTCGCTGCATGAAATGAGGATTGAAGAATGC
AGATTCCTAGCATTAACACATCTTTGGCATCATTTCTCATTTAGATATTT
CAGCACAGCTAAAAGTACACACATAAACAAAGCCGAGAGGATGACGGTGT
CACGAACTACTCTTTGGAGGATTTATTGATGAGGGACTTGTGGATATGAG
GAATAACTCCTCCACCGGCTATGGTTCCTTTAATGAGAGTGTCAAGTTAT
TCATCTCCTCGGATAGCAAGCTGCAAATGCCTTGGAGTAATACGTTTGAC
CTTCAAATCCTTGCTAGCATTCCCTGCCAACTCCAACACTTCGGCAGTTA
GATATTCCAAAATGGCTGCTGTATAAACAGCAGCTGTTGCGCCAACCCTT
CCGTGAGCAGCAGCCCTTTCCTTTAGTAGACGATGGACCCTTCCCACTGG
GAACTGAAGACCAGCACGAGAAGAACGGGAGACGGGTTTCTTCTTGTCCT
TATCCTTGTTGTTGTTAATGGTGGTTTTGCCTGTTATCAGTCCTTTGGCT
CCTTTGCCCGACATTTTCCCGCCTAATTGCTACAGCTTCTTTTAAATTAA
TTAATTATTTATTTAATTATTTTTAATTTTTTCTGAGATGAAAATTATCG
GAGAAGAAAGAAAGAGATAAAGCAAAGCGAGCGTTTGAGATTTTTCC
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